Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46933 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.47326 * 60.00285 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99963 * 359.97438 * 13 12 11 15 15 O 1.34225 * 119.99990 * 179.97438 * 13 12 11 16 16 C 1.45205 * 116.99943 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.24723 * 330.53195 * 16 15 13 18 18 C 1.50631 * 109.25187 * 89.99927 * 16 15 13 19 19 C 1.38911 * 117.75359 * 318.00850 * 18 16 15 20 20 C 1.37928 * 120.54268 * 180.21639 * 19 18 16 21 21 C 1.38269 * 119.77457 * 0.06166 * 20 19 18 22 22 C 1.37935 * 119.77000 * 359.88170 * 21 20 19 23 23 C 1.37670 * 122.55987 * 138.06220 * 18 16 15 24 24 C 1.50630 * 122.56379 * 359.25886 * 23 18 16 25 25 C 1.52725 * 110.58938 * 17.80225 * 24 23 18 26 26 C 1.52735 * 109.25245 * 211.10322 * 16 15 13 27 27 H 1.09000 * 109.68426 * 68.89168 * 26 16 15 28 28 F 1.39900 * 109.68041 * 308.34024 * 26 16 15 29 29 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47722 * 59.99169 * 9 7 2 31 31 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 32 32 H 1.08996 * 109.47452 * 59.99830 * 10 9 7 33 33 H 1.09001 * 109.46997 * 299.99404 * 10 9 7 34 34 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 35 35 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 37 37 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 38 38 H 1.07998 * 119.72836 * 0.23813 * 19 18 16 39 39 H 1.08000 * 120.11704 * 180.08682 * 20 19 18 40 40 H 1.07999 * 120.11689 * 179.90897 * 21 20 19 41 41 H 1.07999 * 119.73242 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.24792 * 138.08619 * 24 23 18 43 43 H 1.08999 * 109.25063 * 257.51187 * 24 23 18 44 44 H 1.08997 * 109.68612 * 68.60886 * 25 24 23 45 45 H 1.08997 * 109.68668 * 189.12552 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5128 -7.4551 0.0015 15 8 2.3921 -8.6175 -0.0005 16 6 1.6013 -9.8353 0.0001 17 1 0.6548 -9.6488 0.5075 18 6 1.3291 -10.2515 -1.4217 19 6 0.9919 -9.2588 -2.3330 20 6 0.7266 -9.5761 -3.6489 21 6 0.7954 -10.8929 -4.0650 22 6 1.1312 -11.8799 -3.1618 23 6 1.4021 -11.5620 -1.8370 24 6 1.7761 -12.6872 -0.9080 25 6 1.6183 -12.2561 0.5486 26 6 2.3633 -10.9303 0.7439 27 1 2.4103 -10.6885 1.8057 28 9 3.6588 -11.0372 0.2267 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8904 32 1 2.8719 -3.6043 0.8905 33 1 2.8718 -3.6043 -0.8895 34 1 0.8533 -5.0451 -0.8886 35 1 0.8539 -5.0445 0.8914 36 1 3.1005 -6.0923 -0.8900 37 1 3.1018 -6.0922 0.8900 38 1 0.9374 -8.2301 -2.0087 39 1 0.4665 -8.7986 -4.3519 40 1 0.5873 -11.1477 -5.0936 41 1 1.1843 -12.9083 -3.4874 42 1 1.1294 -13.5431 -1.1016 43 1 2.8125 -12.9726 -1.0882 44 1 0.5616 -12.1208 0.7791 45 1 2.0426 -13.0162 1.2045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893720954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -156.034927 kcal Electronic energy + Delta-G solvation = -26460.413434 eV Core-core repulsion = 22548.237086 eV Total energy + Delta-G solvation = -3912.176348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.71773 -42.06968 -40.44732 -37.98539 -36.68177 -36.26452 -34.69375 -33.06659 -31.65933 -31.16206 -29.77029 -27.72487 -25.31213 -24.29671 -23.82725 -23.13750 -22.05562 -21.50483 -20.56606 -18.89173 -18.44556 -18.40853 -17.85916 -17.28071 -16.86346 -16.67059 -16.45998 -16.27798 -15.96913 -15.57297 -15.36131 -15.00311 -14.59625 -14.49062 -14.24233 -13.89235 -13.66897 -13.56307 -13.42863 -13.37813 -13.32845 -12.87740 -12.72734 -12.68854 -12.34886 -12.28494 -12.23870 -12.22422 -11.99446 -11.79666 -11.57198 -11.42570 -11.31457 -11.21701 -11.04764 -10.56303 -9.84466 -9.64027 -8.19920 -6.31529 0.20414 0.33838 1.06327 1.40179 1.40714 1.51646 1.54511 2.41256 2.71334 3.13230 3.18889 3.26058 3.40814 3.61807 3.70392 3.87263 3.87471 3.94352 4.02275 4.03801 4.11970 4.17290 4.35216 4.48837 4.50561 4.57733 4.58839 4.73237 4.77608 4.79555 4.83444 4.94025 4.96986 5.03769 5.10886 5.15682 5.22162 5.29532 5.34977 5.44961 5.50173 5.52216 5.55028 5.75959 5.86933 5.97834 6.24496 6.61084 6.86984 7.38141 8.92481 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.002277 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.359213 B =12296.283135 C =12991.574065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.097 4.097 11 C -0.098 4.098 12 C -0.105 4.105 13 C 0.463 3.537 14 O -0.531 6.531 15 O -0.345 6.345 16 C 0.096 3.904 17 H 0.105 0.895 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.069 4.069 24 C -0.084 4.084 25 C -0.139 4.139 26 C 0.099 3.901 27 H 0.117 0.883 28 F -0.211 7.211 29 H 0.263 0.737 30 H -0.014 1.014 31 H -0.012 1.012 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -31.950 -2.166 32.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.018 4.018 10 C -0.134 4.134 11 C -0.136 4.136 12 C -0.142 4.142 13 C 0.308 3.692 14 O -0.420 6.420 15 O -0.262 6.262 16 C 0.041 3.959 17 H 0.122 0.878 18 C -0.121 4.121 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.069 4.069 24 C -0.120 4.120 25 C -0.177 4.177 26 C 0.063 3.937 27 H 0.135 0.865 28 F -0.192 7.192 29 H 0.072 0.928 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.835 -31.887 -2.176 32.325 hybrid contribution -0.342 1.609 -0.183 1.655 sum 4.493 -30.278 -2.359 30.701 Atomic orbital electron populations 1.70132 1.07993 1.27685 1.51980 1.26066 0.95782 1.03661 0.94825 0.85353 0.79184 0.78530 0.77698 1.18212 1.20499 1.20422 1.21775 0.93739 0.92241 1.50085 0.91672 1.19046 0.94626 0.93552 0.94549 1.21441 0.97933 0.92416 1.01608 1.21345 0.97294 0.93010 1.01911 1.21535 0.99029 0.85712 1.07920 1.24371 0.87320 0.86746 0.70741 1.90673 1.16815 1.87981 1.46533 1.86691 1.41277 1.14506 1.83678 1.22279 0.96343 0.82559 0.94685 0.87781 1.19739 1.03340 0.94340 0.94719 1.21310 0.99753 0.98880 0.94851 1.21311 1.00779 0.98168 0.95344 1.21488 0.98165 0.92202 1.01078 1.21525 0.99550 1.01004 0.92105 1.19915 0.97904 0.93082 0.95980 1.20571 1.03577 0.95811 0.92069 1.22246 1.02315 0.94879 0.98211 1.21886 0.78127 0.95219 0.98510 0.86525 1.92814 1.40112 1.97073 1.89169 0.92842 0.99527 0.99363 0.91778 0.92049 0.93167 0.92740 0.85830 0.85093 0.88312 0.85183 0.83143 0.82650 0.87169 0.89307 0.88399 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 11 C -0.10 -3.42 4.50 30.60 0.14 -3.29 16 12 C -0.10 -2.76 5.81 29.85 0.17 -2.58 16 13 C 0.46 13.43 6.32 71.24 0.45 13.88 16 14 O -0.53 -18.43 13.88 21.97 0.30 -18.12 16 15 O -0.34 -9.14 9.43 -51.37 -0.48 -9.63 16 16 C 0.10 2.18 2.39 29.74 0.07 2.26 16 17 H 0.10 2.43 7.12 -2.39 -0.02 2.41 16 18 C -0.12 -2.89 5.51 -19.86 -0.11 -3.00 16 19 C -0.13 -3.53 9.07 22.36 0.20 -3.32 16 20 C -0.14 -3.14 10.05 22.20 0.22 -2.91 16 21 C -0.11 -1.94 10.05 22.21 0.22 -1.71 16 22 C -0.12 -1.94 9.61 22.36 0.21 -1.72 16 23 C -0.07 -1.24 5.71 -19.86 -0.11 -1.36 16 24 C -0.08 -0.92 5.32 29.73 0.16 -0.76 16 25 C -0.14 -1.32 5.84 30.61 0.18 -1.14 16 26 C 0.10 1.59 3.91 30.62 0.12 1.71 16 27 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 28 F -0.21 -4.50 16.02 44.97 0.72 -3.78 16 29 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.89 8.10 -2.39 -0.02 1.88 16 35 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.13 2.80 8.14 -2.39 -0.02 2.79 16 38 H 0.10 3.08 4.97 -2.91 -0.01 3.06 16 39 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.16 1.37 8.05 -2.91 -0.02 1.35 16 42 H 0.11 0.65 8.13 -2.38 -0.02 0.63 16 43 H 0.09 0.99 7.84 -2.39 -0.02 0.97 16 44 H 0.10 0.78 8.10 -2.39 -0.02 0.76 16 45 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -75.45 369.98 6.76 -68.69 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.97 Total: 11.77 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 2.93 Total: -37.39 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.28 Total: -58.43 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.18 Total: -27.75 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.72 Total: -3.78 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.45 6.76 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893720954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.341 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds