Wall clock time and date at job start Tue Mar 31 2020 12:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48503 * 109.47040 * 239.99847 * 3 2 1 5 5 H 1.48498 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47197 * 119.99898 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.87746 * 300.69532 * 9 7 2 11 11 C 1.55152 * 111.04128 * 176.79441 * 9 7 2 12 12 C 1.54320 * 102.94118 * 206.40570 * 11 9 7 13 13 N 1.47014 * 107.27380 * 22.18831 * 12 11 9 14 14 C 1.34781 * 125.65284 * 181.02071 * 13 12 11 15 15 O 1.21599 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99219 * 0.04827 * 14 13 12 17 17 C 1.40847 * 119.99508 * 179.97438 * 16 14 13 18 18 C 1.40235 * 126.07782 * 359.68492 * 17 16 14 19 19 N 1.30837 * 108.34407 * 179.85383 * 18 17 16 20 20 N 1.40068 * 108.36491 * 0.41080 * 19 18 17 21 21 C 1.46494 * 126.06335 * 179.76365 * 20 19 18 22 22 C 1.53783 * 113.61678 * 192.46840 * 21 20 19 23 23 C 1.53779 * 87.08236 * 220.01602 * 22 21 20 24 24 C 1.53776 * 113.61850 * 94.97167 * 21 20 19 25 25 C 1.35732 * 126.07699 * 179.97438 * 17 16 14 26 26 C 1.47430 * 108.70312 * 1.06155 * 13 12 11 27 27 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00311 * 62.42930 * 10 9 7 29 29 H 1.09007 * 110.71500 * 324.76880 * 11 9 7 30 30 H 1.09000 * 110.72475 * 88.03847 * 11 9 7 31 31 H 1.09000 * 109.87963 * 262.77148 * 12 11 9 32 32 H 1.09006 * 109.88030 * 141.61202 * 12 11 9 33 33 H 0.96998 * 120.00902 * 359.97438 * 16 14 13 34 34 H 1.08007 * 125.82480 * 0.02832 * 18 17 16 35 35 H 1.09000 * 112.84864 * 323.76939 * 21 20 19 36 36 H 1.09002 * 113.61387 * 334.57125 * 22 21 20 37 37 H 1.09008 * 113.61141 * 105.46455 * 22 21 20 38 38 H 1.09004 * 113.61370 * 270.88047 * 23 22 21 39 39 H 1.08997 * 113.69005 * 139.99486 * 23 22 21 40 40 H 1.09002 * 113.61107 * 254.53219 * 24 21 20 41 41 H 1.09002 * 113.61442 * 25.34735 * 24 21 20 42 42 H 1.07997 * 126.21380 * 0.02562 * 25 17 16 43 43 H 1.08997 * 110.36336 * 217.03107 * 26 13 12 44 44 H 1.09002 * 110.45871 * 94.75588 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4057 -2.5992 1.1484 11 6 2.2247 -3.7045 -0.0798 12 6 1.3626 -4.8018 -0.7387 13 7 0.2753 -4.1270 -1.4624 14 6 -0.7056 -4.7390 -2.1551 15 8 -1.5566 -4.0772 -2.7177 16 7 -0.7434 -6.0845 -2.2238 17 6 -1.7688 -6.7241 -2.9472 18 6 -2.8131 -6.0899 -3.6356 19 7 -3.5627 -7.0105 -4.1854 20 7 -3.0306 -8.2648 -3.8608 21 6 -3.5700 -9.5632 -4.2723 22 6 -2.9534 -10.7534 -3.5186 23 6 -2.9612 -11.5056 -4.8599 24 6 -2.9132 -10.1285 -5.5426 25 6 -1.9249 -8.0640 -3.0975 26 6 0.4361 -2.6699 -1.3057 27 1 -0.4850 0.8401 0.0004 28 1 -0.2835 -1.9221 1.1896 29 1 3.0856 -3.4638 -0.7036 30 1 2.5428 -4.0104 0.9168 31 1 0.9475 -5.4568 0.0273 32 1 1.9687 -5.3807 -1.4357 33 1 -0.0646 -6.6124 -1.7751 34 1 -2.9699 -5.0234 -3.7030 35 1 -4.6596 -9.5793 -4.2999 36 1 -1.9526 -10.5558 -3.1345 37 1 -3.6169 -11.1875 -2.7706 38 1 -3.8843 -12.0541 -5.0475 39 1 -2.0689 -12.1083 -5.0292 40 1 -3.5442 -10.0583 -6.4286 41 1 -1.9019 -9.7591 -5.7127 42 1 -1.2868 -8.8310 -2.6843 43 1 -0.5374 -2.1888 -1.2112 44 1 0.9836 -2.2539 -2.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898036309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:48 Heat of formation + Delta-G solvation = 35.658639 kcal Electronic energy + Delta-G solvation = -26858.861298 eV Core-core repulsion = 23007.210120 eV Total energy + Delta-G solvation = -3851.651178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36248 -39.70704 -38.66867 -37.34577 -34.35956 -34.14281 -32.18850 -31.32975 -30.27434 -28.90266 -27.74266 -26.17759 -25.48784 -24.78279 -22.83620 -21.70430 -21.14119 -19.73592 -19.59704 -19.16883 -17.72100 -17.44740 -17.02520 -16.09887 -15.77070 -15.38942 -15.02300 -14.86484 -14.62581 -14.33077 -14.07308 -13.55500 -13.29903 -13.13500 -13.01584 -12.81924 -12.64276 -12.47838 -12.11443 -11.73942 -11.63509 -11.52570 -11.13896 -11.02872 -11.01739 -10.84514 -10.62857 -10.59834 -10.48501 -10.43257 -10.18076 -9.57796 -9.39036 -9.25431 -8.68298 -8.38633 -7.92252 -7.38181 -6.27242 -4.36742 1.86507 2.39057 2.91706 3.10224 3.23580 3.29244 3.30797 3.83512 3.90154 4.06729 4.26136 4.32684 4.35091 4.43827 4.72933 4.96935 4.99685 5.14676 5.20660 5.27604 5.37454 5.41048 5.44867 5.49206 5.61142 5.63873 5.74199 5.79310 5.90479 5.99178 6.11624 6.43927 6.48728 6.68867 6.85512 6.93697 7.00817 7.15873 7.20084 7.30596 7.54437 7.75020 7.85393 8.02997 8.44397 8.66406 9.04014 9.31724 9.41516 10.80179 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033771 B = 0.002484 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.909783 B =11267.365839 C =11694.269952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.719 3.281 15 O -0.584 6.584 16 N -0.664 5.664 17 C 0.039 3.961 18 C 0.053 3.947 19 N -0.289 5.289 20 N -0.368 5.368 21 C 0.146 3.854 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.002 4.002 26 C 0.112 3.888 27 H 0.271 0.729 28 H 0.383 0.617 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.402 0.598 34 H 0.208 0.792 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.170 0.830 43 H 0.085 0.915 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -21.304 -6.333 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.021 4.021 13 N -0.360 5.360 14 C 0.421 3.579 15 O -0.462 6.462 16 N -0.312 5.312 17 C -0.067 4.067 18 C -0.134 4.134 19 N -0.110 5.110 20 N -0.153 5.153 21 C 0.043 3.957 22 C -0.184 4.184 23 C -0.176 4.176 24 C -0.188 4.188 25 C -0.149 4.149 26 C -0.010 4.010 27 H 0.081 0.919 28 H 0.234 0.766 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.237 0.763 34 H 0.224 0.776 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.188 0.812 43 H 0.103 0.897 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.853 -21.499 -7.371 23.051 hybrid contribution 1.239 1.231 0.626 1.855 sum -2.615 -20.267 -6.745 21.520 Atomic orbital electron populations 1.69645 1.05995 1.28088 1.49360 1.25072 0.95038 0.99752 0.93316 0.86457 0.79520 0.82117 0.78770 1.20029 1.21086 1.20025 1.21414 0.93583 0.90044 1.52628 0.91567 1.19616 0.86235 0.91574 0.81724 1.86087 1.48949 1.58050 1.46125 1.22595 0.97696 0.94941 1.00149 1.21983 0.88961 0.96393 0.94755 1.47907 1.26270 1.09735 1.52042 1.15382 0.81880 0.80567 0.80024 1.90762 1.40258 1.63913 1.51296 1.41984 1.29011 1.05413 1.54799 1.17532 0.94802 0.90332 1.04025 1.24607 0.92036 1.00867 0.95938 1.77350 1.22473 0.87842 1.23378 1.48287 1.20837 1.05220 1.40985 1.22834 0.99429 0.77134 0.96272 1.23400 1.02393 0.94730 0.97865 1.22703 1.03179 0.96194 0.95507 1.23459 1.02224 0.95637 0.97471 1.21553 0.94789 0.95624 1.02891 1.23221 1.02665 0.75140 0.99991 0.91865 0.76601 0.90365 0.90690 0.92483 0.92982 0.76343 0.77575 0.86300 0.88898 0.89981 0.89424 0.90296 0.90362 0.89297 0.81240 0.89671 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.66 10.72 55.43 0.59 -23.06 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 3 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.76 8.26 -34.44 -0.28 -14.05 16 8 H 0.07 1.65 7.78 -52.48 -0.41 1.24 16 9 C 0.25 5.90 0.87 -89.63 -0.08 5.82 16 10 O -0.58 -14.68 13.15 -35.23 -0.46 -15.15 16 11 C -0.12 -2.21 6.13 -24.90 -0.15 -2.36 16 12 C 0.10 1.71 6.15 -3.07 -0.02 1.69 16 13 N -0.62 -12.57 3.33 -176.24 -0.59 -13.16 16 14 C 0.72 14.46 8.46 -86.91 -0.74 13.72 16 15 O -0.58 -13.60 13.75 5.28 0.07 -13.52 16 16 N -0.66 -10.41 5.44 -14.39 -0.08 -10.49 16 17 C 0.04 0.60 6.90 -83.86 -0.58 0.02 16 18 C 0.05 0.92 10.84 -17.23 -0.19 0.74 16 19 N -0.29 -4.66 12.57 30.70 0.39 -4.27 16 20 N -0.37 -4.61 3.83 -53.74 -0.21 -4.82 16 21 C 0.15 1.25 5.04 -67.12 -0.34 0.91 16 22 C -0.15 -0.84 7.43 -25.92 -0.19 -1.04 16 23 C -0.14 -0.66 8.08 -25.92 -0.21 -0.87 16 24 C -0.15 -1.06 7.88 -25.92 -0.20 -1.26 16 25 C 0.00 -0.02 10.74 -16.67 -0.18 -0.20 16 26 C 0.11 2.64 5.50 -2.53 -0.01 2.62 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.38 10.01 7.32 45.56 0.33 10.34 16 29 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.99 7.81 -40.82 -0.32 4.67 16 34 H 0.21 3.97 5.91 -52.48 -0.31 3.66 16 35 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.51 6.33 -51.93 -0.33 0.19 16 37 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.17 1.39 6.71 -52.49 -0.35 1.04 16 43 H 0.08 2.27 7.47 -51.93 -0.39 1.89 16 44 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -30.98 358.20 -8.72 -39.70 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -5.55 Total: 16.68 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -3.27 Total: 7.50 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.11 Total: -55.80 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.39 Total: -28.67 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.98 -8.72 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898036309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.359 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds