Wall clock time and date at job start Tue Mar 31 2020 12:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48503 * 109.47040 * 239.99847 * 3 2 1 5 5 H 1.48498 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47197 * 119.99898 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.87746 * 300.69532 * 9 7 2 11 11 C 1.55152 * 111.04128 * 176.79441 * 9 7 2 12 12 C 1.54320 * 102.94118 * 206.40570 * 11 9 7 13 13 N 1.47014 * 107.27380 * 22.18831 * 12 11 9 14 14 C 1.34781 * 125.65284 * 181.02071 * 13 12 11 15 15 O 1.21599 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99219 * 0.04827 * 14 13 12 17 17 C 1.40847 * 119.99508 * 179.97438 * 16 14 13 18 18 C 1.40235 * 126.07782 * 359.68492 * 17 16 14 19 19 N 1.30837 * 108.34407 * 179.85383 * 18 17 16 20 20 N 1.40068 * 108.36491 * 0.41080 * 19 18 17 21 21 C 1.46494 * 126.06335 * 179.76365 * 20 19 18 22 22 C 1.53783 * 113.61678 * 192.46840 * 21 20 19 23 23 C 1.53779 * 87.08236 * 220.01602 * 22 21 20 24 24 C 1.53776 * 113.61850 * 94.97167 * 21 20 19 25 25 C 1.35732 * 126.07699 * 179.97438 * 17 16 14 26 26 C 1.47430 * 108.70312 * 1.06155 * 13 12 11 27 27 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00311 * 62.42930 * 10 9 7 29 29 H 1.09007 * 110.71500 * 324.76880 * 11 9 7 30 30 H 1.09000 * 110.72475 * 88.03847 * 11 9 7 31 31 H 1.09000 * 109.87963 * 262.77148 * 12 11 9 32 32 H 1.09006 * 109.88030 * 141.61202 * 12 11 9 33 33 H 0.96998 * 120.00902 * 359.97438 * 16 14 13 34 34 H 1.08007 * 125.82480 * 0.02832 * 18 17 16 35 35 H 1.09000 * 112.84864 * 323.76939 * 21 20 19 36 36 H 1.09002 * 113.61387 * 334.57125 * 22 21 20 37 37 H 1.09008 * 113.61141 * 105.46455 * 22 21 20 38 38 H 1.09004 * 113.61370 * 270.88047 * 23 22 21 39 39 H 1.08997 * 113.69005 * 139.99486 * 23 22 21 40 40 H 1.09002 * 113.61107 * 254.53219 * 24 21 20 41 41 H 1.09002 * 113.61442 * 25.34735 * 24 21 20 42 42 H 1.07997 * 126.21380 * 0.02562 * 25 17 16 43 43 H 1.08997 * 110.36336 * 217.03107 * 26 13 12 44 44 H 1.09002 * 110.45871 * 94.75588 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4057 -2.5992 1.1484 11 6 2.2247 -3.7045 -0.0798 12 6 1.3626 -4.8018 -0.7387 13 7 0.2753 -4.1270 -1.4624 14 6 -0.7056 -4.7390 -2.1551 15 8 -1.5566 -4.0772 -2.7177 16 7 -0.7434 -6.0845 -2.2238 17 6 -1.7688 -6.7241 -2.9472 18 6 -2.8131 -6.0899 -3.6356 19 7 -3.5627 -7.0105 -4.1854 20 7 -3.0306 -8.2648 -3.8608 21 6 -3.5700 -9.5632 -4.2723 22 6 -2.9534 -10.7534 -3.5186 23 6 -2.9612 -11.5056 -4.8599 24 6 -2.9132 -10.1285 -5.5426 25 6 -1.9249 -8.0640 -3.0975 26 6 0.4361 -2.6699 -1.3057 27 1 -0.4850 0.8401 0.0004 28 1 -0.2835 -1.9221 1.1896 29 1 3.0856 -3.4638 -0.7036 30 1 2.5428 -4.0104 0.9168 31 1 0.9475 -5.4568 0.0273 32 1 1.9687 -5.3807 -1.4357 33 1 -0.0646 -6.6124 -1.7751 34 1 -2.9699 -5.0234 -3.7030 35 1 -4.6596 -9.5793 -4.2999 36 1 -1.9526 -10.5558 -3.1345 37 1 -3.6169 -11.1875 -2.7706 38 1 -3.8843 -12.0541 -5.0475 39 1 -2.0689 -12.1083 -5.0292 40 1 -3.5442 -10.0583 -6.4286 41 1 -1.9019 -9.7591 -5.7127 42 1 -1.2868 -8.8310 -2.6843 43 1 -0.5374 -2.1888 -1.2112 44 1 0.9836 -2.2539 -2.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898036309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:48 Heat of formation + Delta-G solvation = 13.170913 kcal Electronic energy + Delta-G solvation = -26859.836439 eV Core-core repulsion = 23007.210120 eV Total energy + Delta-G solvation = -3852.626319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46061 -41.13874 -39.50015 -38.90262 -36.06450 -35.59684 -34.17386 -32.39511 -31.82073 -30.13825 -29.41192 -27.03646 -26.64426 -25.91066 -24.36614 -22.73085 -22.30469 -21.43774 -20.75066 -20.13753 -19.19507 -18.80040 -18.58305 -17.18585 -16.95295 -16.81914 -16.57188 -16.25685 -15.89004 -15.81085 -15.26660 -15.02911 -14.74028 -14.60243 -14.05767 -13.90919 -13.73463 -13.47575 -13.40472 -13.28235 -13.16497 -12.79721 -12.52828 -12.32933 -12.28565 -12.25448 -12.05947 -11.88887 -11.84005 -11.44990 -11.38787 -11.23725 -11.13381 -10.62868 -10.31512 -10.29804 -9.53393 -8.60253 -8.22632 -6.39304 0.80622 1.34582 1.45422 1.45702 1.53680 1.59067 1.78297 2.37887 2.40215 3.03398 3.06204 3.33793 3.55015 3.79917 3.82754 3.85970 3.87268 4.04580 4.12170 4.20502 4.36607 4.51079 4.55352 4.63131 4.66341 4.74290 4.78348 4.80727 4.99523 5.01119 5.08477 5.09307 5.12164 5.18303 5.33883 5.40015 5.41063 5.48565 5.78712 5.82571 6.04735 6.11433 6.18724 6.67089 6.68650 7.03756 7.31557 7.38616 7.54608 8.82603 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033771 B = 0.002484 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.909783 B =11267.365839 C =11694.269952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.104 3.896 13 N -0.628 5.628 14 C 0.711 3.289 15 O -0.628 6.628 16 N -0.641 5.641 17 C 0.001 3.999 18 C 0.024 3.976 19 N -0.317 5.317 20 N -0.355 5.355 21 C 0.120 3.880 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.151 4.151 25 C 0.037 3.963 26 C 0.127 3.873 27 H 0.269 0.731 28 H 0.374 0.626 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.421 0.579 34 H 0.175 0.825 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.221 0.779 43 H 0.042 0.958 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -25.122 -6.072 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.148 4.148 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.413 3.587 15 O -0.509 6.509 16 N -0.290 5.290 17 C -0.104 4.104 18 C -0.161 4.161 19 N -0.140 5.140 20 N -0.140 5.140 21 C 0.020 3.980 22 C -0.174 4.174 23 C -0.160 4.160 24 C -0.189 4.189 25 C -0.112 4.112 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.223 0.777 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.259 0.741 34 H 0.192 0.808 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.237 0.763 43 H 0.060 0.940 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.058 -25.399 -7.112 26.456 hybrid contribution 0.602 2.273 0.474 2.398 sum -1.456 -23.127 -6.638 24.104 Atomic orbital electron populations 1.69777 1.07215 1.28434 1.50164 1.25836 0.95726 1.02882 0.93167 0.85523 0.78277 0.78371 0.78946 1.19480 1.21357 1.19370 1.21790 0.94002 0.91207 1.52289 0.91121 1.19872 0.86785 0.93272 0.80931 1.86076 1.48883 1.57622 1.47015 1.22599 0.97282 0.93444 1.01477 1.22198 0.88020 0.95745 0.95840 1.47800 1.27454 1.08491 1.52659 1.15581 0.81363 0.81919 0.79797 1.90754 1.41824 1.65367 1.52936 1.41550 1.29406 1.03645 1.54429 1.17704 0.95185 0.91566 1.05924 1.24240 0.93904 1.00076 0.97922 1.77281 1.23173 0.89269 1.24259 1.48808 1.20381 1.05362 1.39450 1.23483 1.00095 0.75952 0.98489 1.23447 1.02813 0.92617 0.98487 1.22681 1.04546 0.94896 0.93913 1.23464 1.01411 0.97186 0.96861 1.22211 0.93827 0.95090 1.00030 1.22727 1.00004 0.77361 0.99620 0.92196 0.77705 0.89158 0.89516 0.90512 0.88726 0.74071 0.80777 0.86143 0.87872 0.88699 0.88151 0.88896 0.90559 0.90140 0.76292 0.93975 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 10.72 21.44 0.23 -50.32 16 2 C 0.02 1.30 5.30 84.65 0.45 1.74 16 3 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -28.60 8.26 25.60 0.21 -28.39 16 8 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 9 C 0.23 11.07 0.87 -10.15 -0.01 11.06 16 10 O -0.59 -30.18 13.15 -148.98 -1.96 -32.13 16 11 C -0.11 -3.98 6.13 31.78 0.19 -3.78 16 12 C 0.10 3.16 6.15 86.73 0.53 3.70 16 13 N -0.63 -25.31 3.33 -829.75 -2.76 -28.07 16 14 C 0.71 29.09 8.46 179.05 1.51 30.60 16 15 O -0.63 -31.13 13.75 -4.03 -0.06 -31.18 16 16 N -0.64 -19.26 5.44 -317.69 -1.73 -20.99 16 17 C 0.00 0.04 6.90 37.59 0.26 0.30 16 18 C 0.02 0.89 10.84 85.33 0.92 1.82 16 19 N -0.32 -10.42 12.57 -56.78 -0.71 -11.13 16 20 N -0.36 -8.27 3.83 -323.94 -1.24 -9.52 16 21 C 0.12 1.75 5.04 45.52 0.23 1.98 16 22 C -0.14 -0.97 7.43 31.12 0.23 -0.74 16 23 C -0.12 -0.68 8.08 31.12 0.25 -0.42 16 24 C -0.15 -1.74 7.88 31.12 0.25 -1.50 16 25 C 0.04 0.78 10.74 83.49 0.90 1.68 16 26 C 0.13 6.21 5.50 86.85 0.48 6.69 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.37 20.41 7.32 -74.06 -0.54 19.86 16 29 H 0.09 3.01 8.03 -2.38 -0.02 2.99 16 30 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.42 9.05 7.81 -92.71 -0.72 8.32 16 34 H 0.18 7.45 5.91 -2.91 -0.02 7.44 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 0.56 6.33 -2.39 -0.02 0.54 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.22 2.30 6.71 -2.91 -0.02 2.28 16 43 H 0.04 2.40 7.47 -2.39 -0.02 2.38 16 44 H 0.04 2.17 8.03 -2.39 -0.02 2.16 16 Total: -1.00 -72.97 358.20 -0.01 -72.98 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.22 Total: 41.68 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 6.41 Total: 24.73 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.21 Total: -120.02 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -2.01 Total: -63.32 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -72.97 -0.01 -72.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898036309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.150 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds