Wall clock time and date at job start Tue Mar 31 2020 12:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00162 * 2 1 4 4 H 1.48493 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47054 * 299.99561 * 3 2 1 6 6 H 1.48494 * 109.47183 * 59.99462 * 3 2 1 7 7 C 1.37882 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00246 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88123 * 62.42631 * 9 7 2 11 11 C 1.55152 * 111.03651 * 186.32924 * 9 7 2 12 12 C 1.54336 * 103.01939 * 153.39961 * 11 9 7 13 13 N 1.47026 * 107.26167 * 338.13834 * 12 11 9 14 14 C 1.34777 * 125.64544 * 178.85345 * 13 12 11 15 15 O 1.21599 * 120.00352 * 179.69286 * 14 13 12 16 16 N 1.34775 * 120.00094 * 359.69118 * 14 13 12 17 17 C 1.40846 * 120.00385 * 180.02562 * 16 14 13 18 18 C 1.40237 * 126.07029 * 0.02562 * 17 16 14 19 19 N 1.30845 * 108.33912 * 179.73625 * 18 17 16 20 20 N 1.40065 * 108.36214 * 0.24521 * 19 18 17 21 21 C 1.46503 * 126.05796 * 180.02562 * 20 19 18 22 22 C 1.53775 * 113.61821 * 192.47347 * 21 20 19 23 23 C 1.53777 * 87.08578 * 220.02259 * 22 21 20 24 24 C 1.53785 * 87.07974 * 25.43320 * 23 22 21 25 25 C 1.35727 * 126.08228 * 180.18816 * 17 16 14 26 26 C 1.47425 * 108.70481 * 358.58903 * 13 12 11 27 27 H 0.97002 * 120.00090 * 0.02562 * 1 2 3 28 28 H 0.96694 * 114.00209 * 297.57037 * 10 9 7 29 29 H 1.09004 * 110.72065 * 271.95495 * 11 9 7 30 30 H 1.08999 * 110.71982 * 35.22727 * 11 9 7 31 31 H 1.09002 * 109.99079 * 218.67049 * 12 11 9 32 32 H 1.08995 * 109.78248 * 97.49360 * 12 11 9 33 33 H 0.96998 * 120.00269 * 359.97438 * 16 14 13 34 34 H 1.08002 * 125.83319 * 0.02562 * 18 17 16 35 35 H 1.09000 * 112.84858 * 323.78472 * 21 20 19 36 36 H 1.09002 * 113.61231 * 334.57447 * 22 21 20 37 37 H 1.08998 * 113.61400 * 105.47084 * 22 21 20 38 38 H 1.08998 * 113.61291 * 270.88560 * 23 22 21 39 39 H 1.08998 * 113.61804 * 139.97780 * 23 22 21 40 40 H 1.08998 * 113.61135 * 220.02151 * 24 23 22 41 41 H 1.09001 * 113.61727 * 89.11628 * 24 23 22 42 42 H 1.07998 * 126.21353 * 359.97438 * 25 17 16 43 43 H 1.08998 * 110.36625 * 143.19668 * 26 13 12 44 44 H 1.08998 * 110.36604 * 265.40266 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4993 0.0005 10 8 0.4616 -2.6316 -1.1833 11 6 2.2190 -3.7012 0.1608 12 6 1.3285 -4.7802 0.8125 13 7 0.2053 -4.0865 1.4596 14 6 -0.8081 -4.6797 2.1213 15 8 -1.6844 -4.0032 2.6242 16 7 -0.8501 -6.0228 2.2254 17 6 -1.9093 -6.6428 2.9163 18 6 -2.9820 -5.9900 3.5409 19 7 -3.7634 -6.8962 4.0703 20 7 -3.2160 -8.1585 3.8082 21 6 -3.7782 -9.4456 4.2248 22 6 -2.8069 -10.6257 4.0561 23 6 -4.0128 -11.4471 3.5704 24 6 -4.6519 -10.1131 3.1495 25 6 -2.0718 -7.9779 3.0987 26 6 0.3744 -2.6342 1.2705 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2243 -1.9564 -1.2762 29 1 2.5842 -4.0344 -0.8106 30 1 3.0491 -3.4428 0.8182 31 1 1.8997 -5.3352 1.5567 32 1 0.9531 -5.4600 0.0476 33 1 -0.1513 -6.5625 1.8239 34 1 -3.1389 -4.9220 3.5748 35 1 -4.2501 -9.4035 5.2064 36 1 -2.0513 -10.4629 3.2875 37 1 -2.3858 -10.9824 4.9961 38 1 -4.5481 -11.9535 4.3736 39 1 -3.7838 -12.1052 2.7323 40 1 -5.7203 -10.0560 3.3576 41 1 -4.4008 -9.8102 2.1329 42 1 -1.4135 -8.7555 2.7405 43 1 -0.5931 -2.1566 1.1162 44 1 0.8801 -2.1960 2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898036310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:51 Heat of formation + Delta-G solvation = 35.636723 kcal Electronic energy + Delta-G solvation = -26872.878126 eV Core-core repulsion = 23021.225997 eV Total energy + Delta-G solvation = -3851.652129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35946 -39.70184 -38.66467 -37.34506 -34.35500 -34.13843 -32.22567 -31.32597 -30.26926 -28.89897 -27.72095 -26.17277 -25.48665 -24.78349 -22.83705 -21.69970 -21.13715 -19.73801 -19.59907 -19.16401 -17.71653 -17.44212 -17.01345 -16.09403 -15.75565 -15.41868 -15.03355 -14.78714 -14.70167 -14.29991 -14.06462 -13.55920 -13.29450 -13.13025 -13.03112 -12.81245 -12.64300 -12.46621 -12.10643 -11.74685 -11.65370 -11.51750 -11.12969 -11.05313 -11.02613 -10.83974 -10.61830 -10.59556 -10.45920 -10.43137 -10.17804 -9.56660 -9.36943 -9.25104 -8.70111 -8.38098 -7.91958 -7.37769 -6.27167 -4.36979 1.86846 2.39360 2.92060 3.10720 3.21397 3.29884 3.32830 3.84299 3.90289 4.07115 4.26108 4.33334 4.35504 4.44326 4.73188 4.97074 4.99875 5.14864 5.21424 5.28035 5.37502 5.41171 5.45240 5.50322 5.61204 5.63726 5.74605 5.78802 5.91077 5.98271 6.11769 6.44399 6.49107 6.69145 6.86836 6.94685 7.01142 7.16269 7.21447 7.31285 7.55955 7.74902 7.85746 8.03206 8.45126 8.67274 9.04750 9.30299 9.38589 10.79859 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.002501 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.028107 B =11193.952189 C =11618.354896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.102 3.898 13 N -0.624 5.624 14 C 0.719 3.281 15 O -0.584 6.584 16 N -0.664 5.664 17 C 0.039 3.961 18 C 0.053 3.947 19 N -0.289 5.289 20 N -0.368 5.368 21 C 0.146 3.854 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.002 4.002 26 C 0.113 3.887 27 H 0.270 0.730 28 H 0.381 0.619 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.402 0.598 34 H 0.208 0.792 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.170 0.830 43 H 0.087 0.913 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -21.185 5.798 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.021 4.021 13 N -0.360 5.360 14 C 0.421 3.579 15 O -0.462 6.462 16 N -0.312 5.312 17 C -0.067 4.067 18 C -0.135 4.135 19 N -0.111 5.111 20 N -0.153 5.153 21 C 0.043 3.957 22 C -0.184 4.184 23 C -0.176 4.176 24 C -0.188 4.188 25 C -0.149 4.149 26 C -0.008 4.008 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.224 0.776 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.188 0.812 43 H 0.106 0.894 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.690 -21.356 6.784 22.893 hybrid contribution 1.260 1.223 -0.581 1.850 sum -3.430 -20.133 6.204 21.345 Atomic orbital electron populations 1.69726 1.05957 1.27836 1.49413 1.25088 0.95047 0.99775 0.93364 0.86354 0.80019 0.82792 0.77763 1.19615 1.20776 1.20777 1.21478 0.93651 0.89981 1.52469 0.91473 1.19639 0.86637 0.91585 0.81396 1.86101 1.51572 1.57179 1.44281 1.22590 0.97536 0.95119 1.00093 1.21988 0.88296 0.96213 0.95625 1.47926 1.22924 1.09985 1.55166 1.15378 0.82125 0.80631 0.79726 1.90763 1.39242 1.62886 1.53317 1.41985 1.25889 1.05653 1.57692 1.17532 0.93712 0.90521 1.04915 1.24611 0.91390 1.00950 0.96499 1.77353 1.22291 0.87659 1.23748 1.48288 1.18256 1.05299 1.43487 1.22837 0.96115 0.77270 0.99448 1.23396 0.97537 0.94467 1.02987 1.22707 0.96818 0.96268 1.01801 1.23464 1.00343 0.95349 0.99644 1.21548 0.93678 0.95828 1.03819 1.23196 1.02753 0.75231 0.99651 0.92018 0.76865 0.90705 0.90359 0.92958 0.92523 0.76356 0.77575 0.86316 0.88897 0.90012 0.89426 0.90282 0.90340 0.89259 0.81245 0.89440 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 10.69 55.43 0.59 -23.01 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -13.73 8.27 -34.44 -0.28 -14.02 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.28 16 9 C 0.25 5.86 0.87 -89.63 -0.08 5.78 16 10 O -0.58 -14.58 13.16 -35.23 -0.46 -15.05 16 11 C -0.12 -2.20 6.13 -24.89 -0.15 -2.35 16 12 C 0.10 1.70 6.15 -3.06 -0.02 1.68 16 13 N -0.62 -12.60 3.33 -176.23 -0.59 -13.19 16 14 C 0.72 14.49 8.46 -86.92 -0.74 13.75 16 15 O -0.58 -13.63 13.75 5.28 0.07 -13.56 16 16 N -0.66 -10.43 5.44 -14.39 -0.08 -10.51 16 17 C 0.04 0.60 6.90 -83.86 -0.58 0.03 16 18 C 0.05 0.92 10.84 -17.22 -0.19 0.74 16 19 N -0.29 -4.67 12.57 30.70 0.39 -4.28 16 20 N -0.37 -4.62 3.83 -53.74 -0.21 -4.82 16 21 C 0.15 1.25 5.04 -67.12 -0.34 0.91 16 22 C -0.15 -0.84 7.43 -25.92 -0.19 -1.03 16 23 C -0.14 -0.67 8.08 -25.92 -0.21 -0.88 16 24 C -0.15 -1.08 7.88 -25.91 -0.20 -1.29 16 25 C 0.00 -0.02 10.74 -16.68 -0.18 -0.20 16 26 C 0.11 2.68 5.38 -2.53 -0.01 2.67 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.38 9.86 7.56 45.56 0.34 10.21 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 5.00 7.81 -40.82 -0.32 4.68 16 34 H 0.21 3.98 5.91 -52.49 -0.31 3.67 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.51 6.33 -51.93 -0.33 0.19 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.17 1.39 6.71 -52.49 -0.35 1.04 16 43 H 0.09 2.34 7.33 -51.93 -0.38 1.96 16 44 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -31.01 358.19 -8.70 -39.71 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -5.53 Total: 16.60 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -3.27 Total: 7.52 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.11 Total: -55.81 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.39 Total: -28.60 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.01 -8.70 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898036310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.349 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds