Wall clock time and date at job start Tue Mar 31 2020 12:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00162 * 2 1 4 4 H 1.48493 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47054 * 299.99561 * 3 2 1 6 6 H 1.48494 * 109.47183 * 59.99462 * 3 2 1 7 7 C 1.37882 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00246 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88123 * 62.42631 * 9 7 2 11 11 C 1.55152 * 111.03651 * 186.32924 * 9 7 2 12 12 C 1.54336 * 103.01939 * 153.39961 * 11 9 7 13 13 N 1.47026 * 107.26167 * 338.13834 * 12 11 9 14 14 C 1.34777 * 125.64544 * 178.85345 * 13 12 11 15 15 O 1.21599 * 120.00352 * 179.69286 * 14 13 12 16 16 N 1.34775 * 120.00094 * 359.69118 * 14 13 12 17 17 C 1.40846 * 120.00385 * 180.02562 * 16 14 13 18 18 C 1.40237 * 126.07029 * 0.02562 * 17 16 14 19 19 N 1.30845 * 108.33912 * 179.73625 * 18 17 16 20 20 N 1.40065 * 108.36214 * 0.24521 * 19 18 17 21 21 C 1.46503 * 126.05796 * 180.02562 * 20 19 18 22 22 C 1.53775 * 113.61821 * 192.47347 * 21 20 19 23 23 C 1.53777 * 87.08578 * 220.02259 * 22 21 20 24 24 C 1.53785 * 87.07974 * 25.43320 * 23 22 21 25 25 C 1.35727 * 126.08228 * 180.18816 * 17 16 14 26 26 C 1.47425 * 108.70481 * 358.58903 * 13 12 11 27 27 H 0.97002 * 120.00090 * 0.02562 * 1 2 3 28 28 H 0.96694 * 114.00209 * 297.57037 * 10 9 7 29 29 H 1.09004 * 110.72065 * 271.95495 * 11 9 7 30 30 H 1.08999 * 110.71982 * 35.22727 * 11 9 7 31 31 H 1.09002 * 109.99079 * 218.67049 * 12 11 9 32 32 H 1.08995 * 109.78248 * 97.49360 * 12 11 9 33 33 H 0.96998 * 120.00269 * 359.97438 * 16 14 13 34 34 H 1.08002 * 125.83319 * 0.02562 * 18 17 16 35 35 H 1.09000 * 112.84858 * 323.78472 * 21 20 19 36 36 H 1.09002 * 113.61231 * 334.57447 * 22 21 20 37 37 H 1.08998 * 113.61400 * 105.47084 * 22 21 20 38 38 H 1.08998 * 113.61291 * 270.88560 * 23 22 21 39 39 H 1.08998 * 113.61804 * 139.97780 * 23 22 21 40 40 H 1.08998 * 113.61135 * 220.02151 * 24 23 22 41 41 H 1.09001 * 113.61727 * 89.11628 * 24 23 22 42 42 H 1.07998 * 126.21353 * 359.97438 * 25 17 16 43 43 H 1.08998 * 110.36625 * 143.19668 * 26 13 12 44 44 H 1.08998 * 110.36604 * 265.40266 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4993 0.0005 10 8 0.4616 -2.6316 -1.1833 11 6 2.2190 -3.7012 0.1608 12 6 1.3285 -4.7802 0.8125 13 7 0.2053 -4.0865 1.4596 14 6 -0.8081 -4.6797 2.1213 15 8 -1.6844 -4.0032 2.6242 16 7 -0.8501 -6.0228 2.2254 17 6 -1.9093 -6.6428 2.9163 18 6 -2.9820 -5.9900 3.5409 19 7 -3.7634 -6.8962 4.0703 20 7 -3.2160 -8.1585 3.8082 21 6 -3.7782 -9.4456 4.2248 22 6 -2.8069 -10.6257 4.0561 23 6 -4.0128 -11.4471 3.5704 24 6 -4.6519 -10.1131 3.1495 25 6 -2.0718 -7.9779 3.0987 26 6 0.3744 -2.6342 1.2705 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2243 -1.9564 -1.2762 29 1 2.5842 -4.0344 -0.8106 30 1 3.0491 -3.4428 0.8182 31 1 1.8997 -5.3352 1.5567 32 1 0.9531 -5.4600 0.0476 33 1 -0.1513 -6.5625 1.8239 34 1 -3.1389 -4.9220 3.5748 35 1 -4.2501 -9.4035 5.2064 36 1 -2.0513 -10.4629 3.2875 37 1 -2.3858 -10.9824 4.9961 38 1 -4.5481 -11.9535 4.3736 39 1 -3.7838 -12.1052 2.7323 40 1 -5.7203 -10.0560 3.3576 41 1 -4.4008 -9.8102 2.1329 42 1 -1.4135 -8.7555 2.7405 43 1 -0.5931 -2.1566 1.1162 44 1 0.8801 -2.1960 2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898036310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:51 Heat of formation + Delta-G solvation = 13.070679 kcal Electronic energy + Delta-G solvation = -26873.856663 eV Core-core repulsion = 23021.225997 eV Total energy + Delta-G solvation = -3852.630666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46011 -41.13645 -39.50048 -38.90283 -36.05934 -35.59323 -34.20968 -32.39373 -31.81616 -30.13493 -29.39469 -27.04112 -26.64571 -25.91114 -24.36896 -22.73002 -22.30351 -21.44563 -20.74916 -20.13630 -19.18514 -18.79386 -18.58315 -17.20287 -16.93344 -16.80752 -16.61552 -16.23931 -15.88519 -15.79663 -15.29683 -14.99436 -14.76015 -14.60610 -14.06060 -13.90966 -13.72260 -13.51592 -13.37832 -13.29933 -13.15890 -12.85247 -12.50018 -12.36670 -12.28251 -12.18405 -12.05876 -11.89195 -11.83629 -11.44805 -11.39024 -11.22025 -11.12506 -10.65510 -10.31497 -10.29045 -9.53180 -8.60160 -8.22589 -6.39611 0.80690 1.34688 1.42646 1.45678 1.56122 1.59126 1.78555 2.38101 2.40010 3.03367 3.06588 3.33808 3.54967 3.79931 3.82182 3.85922 3.87226 4.04393 4.11303 4.20800 4.36432 4.51113 4.55415 4.63173 4.66382 4.74297 4.79328 4.80705 4.99413 5.01091 5.08862 5.10192 5.12735 5.18592 5.34259 5.40066 5.41368 5.49606 5.78500 5.82699 6.05012 6.11663 6.19033 6.67457 6.68946 7.04058 7.29742 7.37166 7.55012 8.82491 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.002501 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.028107 B =11193.952189 C =11618.354896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.103 3.897 13 N -0.629 5.629 14 C 0.711 3.289 15 O -0.628 6.628 16 N -0.641 5.641 17 C 0.001 3.999 18 C 0.024 3.976 19 N -0.317 5.317 20 N -0.355 5.355 21 C 0.121 3.879 22 C -0.134 4.134 23 C -0.123 4.123 24 C -0.152 4.152 25 C 0.037 3.963 26 C 0.129 3.871 27 H 0.268 0.732 28 H 0.372 0.628 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.421 0.579 34 H 0.175 0.825 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.221 0.779 43 H 0.044 0.956 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -25.027 5.788 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.591 4.591 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.413 3.587 15 O -0.509 6.509 16 N -0.290 5.290 17 C -0.104 4.104 18 C -0.161 4.161 19 N -0.140 5.140 20 N -0.140 5.140 21 C 0.020 3.980 22 C -0.173 4.173 23 C -0.161 4.161 24 C -0.191 4.191 25 C -0.112 4.112 26 C 0.005 3.995 27 H 0.077 0.923 28 H 0.221 0.779 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.259 0.741 34 H 0.192 0.808 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.237 0.763 43 H 0.063 0.937 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.834 -25.281 6.776 26.326 hybrid contribution 0.586 2.276 -0.526 2.408 sum -2.249 -23.005 6.250 23.945 Atomic orbital electron populations 1.69857 1.07182 1.28249 1.50177 1.25843 0.95728 1.02877 0.93212 0.85423 0.79259 0.79070 0.77363 1.18600 1.20719 1.21050 1.21828 0.93979 0.91152 1.52146 0.91170 1.19883 0.87213 0.93270 0.80556 1.86091 1.51451 1.56769 1.45135 1.22595 0.97162 0.93646 1.01370 1.22205 0.87074 0.95542 0.97010 1.47819 1.24167 1.08777 1.55700 1.15579 0.81578 0.81975 0.79538 1.90755 1.40808 1.64370 1.54952 1.41550 1.26372 1.03897 1.57219 1.17704 0.93935 0.91747 1.06984 1.24241 0.93253 1.00159 0.98495 1.77284 1.22909 0.89134 1.24659 1.48809 1.17902 1.05395 1.41895 1.23485 0.98210 0.76091 1.00172 1.23439 0.97497 0.92247 1.04099 1.22686 0.95797 0.95054 1.02519 1.23475 1.00225 0.96869 0.98506 1.22208 0.92906 0.95332 1.00718 1.22694 1.00203 0.77417 0.99184 0.92275 0.77932 0.89476 0.89210 0.88738 0.90502 0.74080 0.80790 0.86045 0.87909 0.88559 0.88083 0.88967 0.90576 0.90284 0.76290 0.93727 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 10.69 21.45 0.23 -50.24 16 2 C 0.02 1.27 5.29 84.66 0.45 1.72 16 3 Si 0.96 41.96 29.54 68.60 2.03 43.98 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.55 -28.49 8.27 25.60 0.21 -28.27 16 8 H 0.07 3.49 7.79 -2.91 -0.02 3.46 16 9 C 0.23 11.02 0.87 -10.15 -0.01 11.01 16 10 O -0.59 -29.91 13.16 -148.98 -1.96 -31.87 16 11 C -0.11 -3.97 6.13 31.79 0.19 -3.77 16 12 C 0.10 3.16 6.15 86.73 0.53 3.69 16 13 N -0.63 -25.39 3.33 -829.73 -2.76 -28.15 16 14 C 0.71 29.16 8.46 179.05 1.51 30.67 16 15 O -0.63 -31.22 13.75 -4.03 -0.06 -31.28 16 16 N -0.64 -19.31 5.44 -317.71 -1.73 -21.04 16 17 C 0.00 0.04 6.90 37.59 0.26 0.30 16 18 C 0.02 0.89 10.84 85.33 0.92 1.82 16 19 N -0.32 -10.44 12.57 -56.77 -0.71 -11.15 16 20 N -0.36 -8.29 3.83 -323.93 -1.24 -9.53 16 21 C 0.12 1.76 5.04 45.52 0.23 1.99 16 22 C -0.13 -0.95 7.43 31.12 0.23 -0.72 16 23 C -0.12 -0.70 8.08 31.12 0.25 -0.45 16 24 C -0.15 -1.82 7.88 31.12 0.25 -1.58 16 25 C 0.04 0.78 10.74 83.49 0.90 1.68 16 26 C 0.13 6.33 5.38 86.85 0.47 6.79 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.37 20.12 7.56 -74.06 -0.56 19.56 16 29 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.09 3.01 8.03 -2.39 -0.02 2.99 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.42 9.07 7.81 -92.71 -0.72 8.35 16 34 H 0.18 7.47 5.91 -2.91 -0.02 7.45 16 35 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 0.55 6.33 -2.39 -0.02 0.54 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.22 2.30 6.71 -2.91 -0.02 2.28 16 43 H 0.04 2.55 7.33 -2.39 -0.02 2.53 16 44 H 0.04 2.10 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -73.06 358.19 -0.04 -73.10 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.24 Total: 41.28 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 6.40 Total: 24.88 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -6.21 Total: -120.10 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -2.02 Total: -63.15 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -73.06 -0.04 -73.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898036310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.175 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds