Wall clock time and date at job start Tue Mar 31 2020 13:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39758 * 125.83537 * 2 1 4 4 C 1.36104 * 107.82589 * 180.26280 * 3 2 1 5 5 N 1.39474 * 126.21868 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99809 * 0.04171 * 5 4 3 7 7 O 1.21292 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00113 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.30023 * 331.76045 * 8 6 5 10 10 C 1.52925 * 109.30013 * 91.14000 * 8 6 5 11 11 C 1.53346 * 108.67329 * 171.06586 * 10 8 6 12 12 C 1.53074 * 108.42646 * 292.46566 * 11 10 8 13 13 C 1.50181 * 109.88951 * 48.89906 * 12 11 10 14 14 O 1.21281 * 118.24357 * 162.39471 * 13 12 11 15 15 N 1.33353 * 123.50769 * 342.42087 * 13 12 11 16 16 C 1.46502 * 117.94469 * 182.19603 * 15 13 12 17 17 N 1.35266 * 107.56719 * 359.97438 * 4 3 2 18 18 C 1.46502 * 126.04373 * 179.97438 * 17 4 3 19 19 C 1.50702 * 109.47432 * 270.02110 * 18 17 4 20 20 H 1.07998 * 119.99931 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00020 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99826 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46815 * 120.00082 * 23 21 19 26 26 H 1.48497 * 109.46950 * 240.00009 * 23 21 19 27 27 N 1.30849 * 125.83487 * 180.30130 * 2 1 3 28 28 H 1.09000 * 109.47315 * 269.71857 * 1 2 3 29 29 H 1.09006 * 109.46877 * 29.72332 * 1 2 3 30 30 H 1.09008 * 109.46784 * 149.71937 * 1 2 3 31 31 H 1.07999 * 126.08484 * 0.23042 * 3 2 1 32 32 H 0.97002 * 120.00434 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.59992 * 290.81816 * 10 8 6 34 34 H 1.08994 * 109.60354 * 51.30852 * 10 8 6 35 35 H 1.08997 * 109.67396 * 172.73284 * 11 10 8 36 36 H 1.09000 * 109.70360 * 52.21583 * 11 10 8 37 37 H 1.08997 * 109.40060 * 288.77348 * 12 11 10 38 38 H 1.08997 * 109.39978 * 169.02667 * 12 11 10 39 39 H 1.09004 * 109.47108 * 274.85814 * 16 15 13 40 40 H 1.08993 * 109.47035 * 34.86385 * 16 15 13 41 41 H 1.09007 * 109.46910 * 154.86076 * 16 15 13 42 42 H 1.08997 * 109.47051 * 30.02800 * 18 17 4 43 43 H 1.09001 * 109.46626 * 150.02168 * 18 17 4 44 44 H 0.96996 * 120.00323 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0059 5 7 4.7513 1.5275 -0.0085 6 6 4.6157 2.8684 -0.0041 7 8 3.5096 3.3662 0.0016 8 6 5.8383 3.7494 -0.0074 9 1 6.6626 3.2234 0.4740 10 6 6.2248 4.0722 -1.4513 11 6 7.3236 5.1417 -1.4381 12 6 6.7213 6.4479 -0.9146 13 6 5.9565 6.1867 0.3513 14 8 5.6934 7.1292 1.0678 15 7 5.5519 4.9737 0.7299 16 6 4.7710 4.8649 1.9646 17 7 3.6092 -0.6404 -0.0090 18 6 4.7871 -1.5115 -0.0160 19 6 5.1852 -1.8066 -1.4392 20 1 4.6179 -1.3869 -2.2567 21 6 6.2737 -2.6125 -1.6976 22 7 6.9649 -3.1232 -0.7021 23 14 6.7676 -2.9777 -3.4617 24 1 5.8363 -2.2871 -4.3895 25 1 8.1513 -2.4933 -3.6987 26 1 6.7083 -4.4423 -3.6992 27 7 2.2731 -1.0608 -0.0056 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.9901 2.1597 0.0035 32 1 5.6358 1.1295 -0.0132 33 1 6.5966 3.1719 -1.9403 34 1 5.3539 4.4493 -1.9874 35 1 7.7021 5.2915 -2.4492 36 1 8.1369 4.8250 -0.7851 37 1 6.0483 6.8627 -1.6650 38 1 7.5212 7.1606 -0.7138 39 1 5.4467 4.8030 2.8177 40 1 4.1328 5.7422 2.0694 41 1 4.1523 3.9682 1.9254 42 1 5.6104 -1.0134 0.4958 43 1 4.5520 -2.4444 0.4964 44 1 7.7309 -3.6898 -0.8838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906374907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:44 Heat of formation + Delta-G solvation = 9.173556 kcal Electronic energy + Delta-G solvation = -27538.956530 eV Core-core repulsion = 23686.156872 eV Total energy + Delta-G solvation = -3852.799658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40838 -40.57926 -39.12975 -36.46557 -34.98133 -34.24633 -33.83500 -32.16295 -30.60961 -29.18033 -28.24100 -27.26663 -26.12119 -25.37589 -22.99668 -22.55176 -21.78754 -19.95503 -19.52199 -18.81814 -17.37202 -16.97387 -16.79794 -16.68399 -16.37738 -15.69430 -15.18441 -14.90894 -14.55926 -14.44655 -14.28136 -14.04812 -13.80762 -13.74825 -12.98610 -12.85767 -12.64067 -12.57425 -12.34410 -12.28046 -12.04478 -11.85764 -11.82791 -11.64652 -11.33776 -11.27041 -11.11989 -10.97846 -10.47514 -10.42053 -10.22566 -9.86559 -9.84077 -9.65592 -8.91064 -8.79854 -8.01250 -7.55786 -6.40744 -4.49585 1.96541 2.33890 2.60732 2.80654 3.04988 3.09145 3.18983 3.24032 3.49385 3.65480 4.17106 4.21348 4.27047 4.33510 4.45793 4.66809 4.83296 4.92778 5.06238 5.28448 5.28683 5.37132 5.44126 5.48556 5.53033 5.55935 5.59678 5.81604 5.84267 5.97342 6.06738 6.07761 6.09746 6.16973 6.31015 6.56130 6.74551 6.95980 7.18468 7.38925 7.46947 7.53193 7.71450 7.76402 7.95668 8.11795 8.53421 8.62651 9.18546 10.66394 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004282 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.666640 B = 6537.748676 C = 8407.110722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.298 3.702 5 N -0.633 5.633 6 C 0.510 3.490 7 O -0.500 6.500 8 C 0.135 3.865 9 H 0.101 0.899 10 C -0.131 4.131 11 C -0.121 4.121 12 C -0.135 4.135 13 C 0.521 3.479 14 O -0.552 6.552 15 N -0.586 5.586 16 C 0.074 3.926 17 N -0.342 5.342 18 C 0.256 3.744 19 C -0.541 4.541 20 H 0.066 0.934 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 N -0.283 5.283 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.161 0.839 32 H 0.418 0.582 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 13.816 0.223 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.325 4.325 4 C 0.076 3.924 5 N -0.280 5.280 6 C 0.294 3.706 7 O -0.373 6.373 8 C 0.027 3.973 9 H 0.119 0.881 10 C -0.169 4.169 11 C -0.158 4.158 12 C -0.175 4.175 13 C 0.310 3.690 14 O -0.430 6.430 15 N -0.319 5.319 16 C -0.069 4.069 17 N -0.128 5.128 18 C 0.138 3.862 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.205 1.205 27 N -0.108 5.108 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.255 0.745 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.417 13.229 0.643 13.251 hybrid contribution 0.985 0.014 -0.953 1.371 sum 1.402 13.244 -0.310 13.321 Atomic orbital electron populations 1.20031 0.87536 1.02497 1.02099 1.22039 0.96557 0.90993 1.01783 1.21263 0.89048 1.00446 1.21702 1.17894 0.87842 0.83395 1.03290 1.42757 1.08556 1.05341 1.71382 1.20624 0.91402 0.81612 0.76940 1.90683 1.26339 1.73577 1.46661 1.20881 0.95125 0.85716 0.95587 0.88133 1.21924 1.00511 1.01546 0.92878 1.21661 0.97710 0.93449 1.03006 1.21697 1.00953 0.99627 0.95226 1.20143 0.79582 0.81624 0.87647 1.90719 1.57260 1.40868 1.54141 1.46924 1.54269 1.05692 1.24986 1.21863 0.95810 1.04322 0.84865 1.49380 1.06590 1.02112 1.54694 1.19647 0.77754 0.89808 0.99006 1.21369 1.13319 1.31986 0.91265 0.91626 1.24934 0.95677 0.94816 0.98202 1.69919 1.19044 1.32531 1.31166 0.86311 0.78325 0.78547 0.83601 1.19547 1.20596 1.20510 1.77380 0.86110 1.21776 1.25541 0.91328 0.91120 0.91449 0.82193 0.74526 0.88305 0.89721 0.89616 0.90531 0.88006 0.87946 0.92653 0.90274 0.90151 0.93805 0.92497 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.99 7.21 -82.44 -0.59 0.39 16 3 C -0.29 -5.69 9.58 -39.78 -0.38 -6.07 16 4 C 0.30 5.88 7.66 -153.16 -1.17 4.71 16 5 N -0.63 -9.89 5.42 -11.46 -0.06 -9.95 16 6 C 0.51 7.15 5.66 -10.99 -0.06 7.08 16 7 O -0.50 -8.35 12.18 5.55 0.07 -8.29 16 8 C 0.14 1.42 3.13 -69.52 -0.22 1.20 16 9 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 10 C -0.13 -1.12 5.29 -26.59 -0.14 -1.26 16 11 C -0.12 -0.80 6.03 -26.51 -0.16 -0.96 16 12 C -0.14 -1.12 6.03 -28.10 -0.17 -1.29 16 13 C 0.52 6.47 7.47 -11.87 -0.09 6.38 16 14 O -0.55 -8.85 16.30 5.56 0.09 -8.76 16 15 N -0.59 -7.02 2.95 -176.50 -0.52 -7.54 16 16 C 0.07 0.92 9.53 59.85 0.57 1.49 16 17 N -0.34 -7.64 3.60 -61.57 -0.22 -7.86 16 18 C 0.26 6.08 6.01 -5.19 -0.03 6.05 16 19 C -0.54 -13.86 9.39 -34.44 -0.32 -14.19 16 20 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 21 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -23.37 13.29 55.43 0.74 -22.63 16 23 Si 0.91 19.79 29.54 -169.99 -5.02 14.77 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 N -0.28 -6.36 12.57 33.65 0.42 -5.93 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.16 3.03 5.83 -52.49 -0.31 2.72 16 32 H 0.42 5.89 7.96 -40.82 -0.32 5.56 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.07 7.37 -51.93 -0.38 0.68 16 41 H 0.08 1.06 5.50 -51.93 -0.29 0.78 16 42 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -32.57 363.96 -7.82 -40.39 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.30 Total: 5.68 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.49 Total: 4.63 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.35 Total: -53.91 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.16 Total: -17.04 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.57 -7.82 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.566 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds