Wall clock time and date at job start Tue Mar 31 2020 13:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39758 * 125.83537 * 2 1 4 4 C 1.36104 * 107.82589 * 180.26280 * 3 2 1 5 5 N 1.39474 * 126.21868 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99809 * 0.04171 * 5 4 3 7 7 O 1.21292 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00113 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.30023 * 331.76045 * 8 6 5 10 10 C 1.52925 * 109.30013 * 91.14000 * 8 6 5 11 11 C 1.53346 * 108.67329 * 171.06586 * 10 8 6 12 12 C 1.53074 * 108.42646 * 292.46566 * 11 10 8 13 13 C 1.50181 * 109.88951 * 48.89906 * 12 11 10 14 14 O 1.21281 * 118.24357 * 162.39471 * 13 12 11 15 15 N 1.33353 * 123.50769 * 342.42087 * 13 12 11 16 16 C 1.46502 * 117.94469 * 182.19603 * 15 13 12 17 17 N 1.35266 * 107.56719 * 359.97438 * 4 3 2 18 18 C 1.46502 * 126.04373 * 179.97438 * 17 4 3 19 19 C 1.50702 * 109.47432 * 270.02110 * 18 17 4 20 20 H 1.07998 * 119.99931 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00020 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99826 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46815 * 120.00082 * 23 21 19 26 26 H 1.48497 * 109.46950 * 240.00009 * 23 21 19 27 27 N 1.30849 * 125.83487 * 180.30130 * 2 1 3 28 28 H 1.09000 * 109.47315 * 269.71857 * 1 2 3 29 29 H 1.09006 * 109.46877 * 29.72332 * 1 2 3 30 30 H 1.09008 * 109.46784 * 149.71937 * 1 2 3 31 31 H 1.07999 * 126.08484 * 0.23042 * 3 2 1 32 32 H 0.97002 * 120.00434 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.59992 * 290.81816 * 10 8 6 34 34 H 1.08994 * 109.60354 * 51.30852 * 10 8 6 35 35 H 1.08997 * 109.67396 * 172.73284 * 11 10 8 36 36 H 1.09000 * 109.70360 * 52.21583 * 11 10 8 37 37 H 1.08997 * 109.40060 * 288.77348 * 12 11 10 38 38 H 1.08997 * 109.39978 * 169.02667 * 12 11 10 39 39 H 1.09004 * 109.47108 * 274.85814 * 16 15 13 40 40 H 1.08993 * 109.47035 * 34.86385 * 16 15 13 41 41 H 1.09007 * 109.46910 * 154.86076 * 16 15 13 42 42 H 1.08997 * 109.47051 * 30.02800 * 18 17 4 43 43 H 1.09001 * 109.46626 * 150.02168 * 18 17 4 44 44 H 0.96996 * 120.00323 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0059 5 7 4.7513 1.5275 -0.0085 6 6 4.6157 2.8684 -0.0041 7 8 3.5096 3.3662 0.0016 8 6 5.8383 3.7494 -0.0074 9 1 6.6626 3.2234 0.4740 10 6 6.2248 4.0722 -1.4513 11 6 7.3236 5.1417 -1.4381 12 6 6.7213 6.4479 -0.9146 13 6 5.9565 6.1867 0.3513 14 8 5.6934 7.1292 1.0678 15 7 5.5519 4.9737 0.7299 16 6 4.7710 4.8649 1.9646 17 7 3.6092 -0.6404 -0.0090 18 6 4.7871 -1.5115 -0.0160 19 6 5.1852 -1.8066 -1.4392 20 1 4.6179 -1.3869 -2.2567 21 6 6.2737 -2.6125 -1.6976 22 7 6.9649 -3.1232 -0.7021 23 14 6.7676 -2.9777 -3.4617 24 1 5.8363 -2.2871 -4.3895 25 1 8.1513 -2.4933 -3.6987 26 1 6.7083 -4.4423 -3.6992 27 7 2.2731 -1.0608 -0.0056 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3633 0.8925 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.9901 2.1597 0.0035 32 1 5.6358 1.1295 -0.0132 33 1 6.5966 3.1719 -1.9403 34 1 5.3539 4.4493 -1.9874 35 1 7.7021 5.2915 -2.4492 36 1 8.1369 4.8250 -0.7851 37 1 6.0483 6.8627 -1.6650 38 1 7.5212 7.1606 -0.7138 39 1 5.4467 4.8030 2.8177 40 1 4.1328 5.7422 2.0694 41 1 4.1523 3.9682 1.9254 42 1 5.6104 -1.0134 0.4958 43 1 4.5520 -2.4444 0.4964 44 1 7.7309 -3.6898 -0.8838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906374907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:44 Heat of formation + Delta-G solvation = -11.935923 kcal Electronic energy + Delta-G solvation = -27539.871906 eV Core-core repulsion = 23686.156872 eV Total energy + Delta-G solvation = -3853.715033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65123 -41.82975 -40.34490 -37.43543 -36.35787 -35.65541 -35.02448 -33.84251 -31.63643 -30.66712 -29.64652 -28.19420 -27.81111 -26.31747 -24.75253 -23.31297 -23.05612 -21.36540 -20.91579 -19.68044 -18.89494 -18.57882 -18.05241 -17.66040 -17.59835 -16.84929 -16.49984 -16.45082 -15.90189 -15.64533 -15.34610 -15.26619 -14.79651 -14.53478 -14.44320 -14.42421 -14.05341 -13.72098 -13.52730 -13.39313 -13.27408 -13.12605 -13.01292 -12.88544 -12.70405 -12.64653 -12.29561 -12.01147 -11.90087 -11.86064 -11.66827 -11.51802 -11.15030 -10.76039 -10.74289 -9.92818 -9.64445 -9.10042 -8.34593 -6.51875 0.66625 1.16921 1.37481 1.41011 1.47500 1.53734 1.57353 1.87546 2.04383 2.19318 2.36767 2.96471 3.20589 3.45747 3.56781 3.80946 3.82234 3.96105 4.12349 4.22446 4.29056 4.47553 4.54499 4.60184 4.69190 4.74226 4.76454 4.82113 4.85359 4.86926 4.88331 4.94127 4.95612 5.01341 5.18477 5.20236 5.23119 5.28420 5.53313 5.78484 5.93759 6.09939 6.21148 6.29646 6.58087 6.83436 7.01009 7.01628 7.20576 8.72041 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004282 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.666640 B = 6537.748676 C = 8407.110722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.057 3.943 3 C -0.305 4.305 4 C 0.300 3.700 5 N -0.629 5.629 6 C 0.513 3.487 7 O -0.526 6.526 8 C 0.140 3.860 9 H 0.131 0.869 10 C -0.130 4.130 11 C -0.110 4.110 12 C -0.130 4.130 13 C 0.514 3.486 14 O -0.595 6.595 15 N -0.588 5.588 16 C 0.076 3.924 17 N -0.364 5.364 18 C 0.271 3.729 19 C -0.553 4.553 20 H 0.048 0.952 21 C 0.030 3.970 22 N -0.914 5.914 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.262 1.262 26 H -0.280 1.280 27 N -0.330 5.330 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.425 0.575 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.025 0.975 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 14.675 -1.220 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C -0.337 4.337 4 C 0.078 3.922 5 N -0.278 5.278 6 C 0.300 3.700 7 O -0.401 6.401 8 C 0.033 3.967 9 H 0.149 0.851 10 C -0.168 4.168 11 C -0.148 4.148 12 C -0.169 4.169 13 C 0.305 3.695 14 O -0.477 6.477 15 N -0.320 5.320 16 C -0.067 4.067 17 N -0.149 5.149 18 C 0.152 3.848 19 C -0.592 4.592 20 H 0.066 0.934 21 C -0.172 4.172 22 N -0.551 5.551 23 Si 0.792 3.208 24 H -0.200 1.200 25 H -0.187 1.187 26 H -0.206 1.206 27 N -0.155 5.155 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.183 0.817 32 H 0.263 0.737 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.790 14.091 -0.803 14.226 hybrid contribution 0.472 -0.202 -0.447 0.681 sum 2.262 13.888 -1.250 14.127 Atomic orbital electron populations 1.20223 0.84133 1.03831 1.03815 1.22856 0.98665 0.90138 0.99099 1.21443 0.89146 1.00678 1.22427 1.18243 0.89394 0.82818 1.01785 1.42896 1.07818 1.05582 1.71484 1.21371 0.92304 0.81026 0.75295 1.90665 1.27942 1.73818 1.47638 1.21109 0.93689 0.84523 0.97409 0.85144 1.22010 1.00937 1.02927 0.90962 1.21669 0.96943 0.91428 1.04724 1.21763 1.01054 1.01088 0.93045 1.20987 0.79204 0.80873 0.88462 1.90698 1.59119 1.42085 1.55780 1.47057 1.53852 1.06346 1.24738 1.21769 0.95974 1.02955 0.85999 1.49187 1.06289 1.02855 1.56613 1.19269 0.78583 0.89020 0.97923 1.21413 1.13595 1.32640 0.91519 0.93362 1.25639 0.95384 0.94256 1.01878 1.69990 1.19414 1.32789 1.32953 0.85363 0.78563 0.78018 0.78856 1.20038 1.18699 1.20604 1.77330 0.86526 1.23574 1.28101 0.89297 0.88948 0.90909 0.81660 0.73659 0.86949 0.90856 0.87039 0.89272 0.87117 0.86480 0.91333 0.91879 0.91167 0.93013 0.95665 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.44 71.24 0.74 -0.94 16 2 C 0.06 2.22 7.21 43.07 0.31 2.53 16 3 C -0.31 -11.86 9.58 22.14 0.21 -11.65 16 4 C 0.30 11.92 7.66 131.32 1.01 12.93 16 5 N -0.63 -19.33 5.42 -308.57 -1.67 -21.01 16 6 C 0.51 13.95 5.66 87.66 0.50 14.44 16 7 O -0.53 -17.48 12.18 -3.07 -0.04 -17.51 16 8 C 0.14 2.66 3.13 44.36 0.14 2.80 16 9 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 10 C -0.13 -1.86 5.29 30.69 0.16 -1.70 16 11 C -0.11 -1.04 6.03 30.73 0.19 -0.85 16 12 C -0.13 -1.80 6.03 29.71 0.18 -1.62 16 13 C 0.51 12.13 7.47 87.72 0.65 12.78 16 14 O -0.60 -19.02 16.30 -3.03 -0.05 -19.07 16 15 N -0.59 -13.41 2.95 -831.51 -2.45 -15.86 16 16 C 0.08 1.89 9.53 127.77 1.22 3.10 16 17 N -0.36 -16.62 3.60 -348.71 -1.26 -17.87 16 18 C 0.27 13.23 6.01 85.63 0.51 13.74 16 19 C -0.55 -28.70 9.39 25.60 0.24 -28.46 16 20 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 21 C 0.03 1.53 5.46 84.66 0.46 1.99 16 22 N -0.91 -47.79 13.29 21.45 0.28 -47.51 16 23 Si 0.97 39.93 29.54 68.60 2.03 41.95 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 27 N -0.33 -15.16 12.57 -47.44 -0.60 -15.76 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.17 6.23 5.83 -2.91 -0.02 6.22 16 32 H 0.43 11.61 7.96 -92.71 -0.74 10.88 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.68 8.13 -2.39 -0.02 0.66 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.06 1.76 7.37 -2.39 -0.02 1.74 16 41 H 0.07 1.87 5.50 -2.38 -0.01 1.86 16 42 H 0.05 2.39 7.50 -2.39 -0.02 2.38 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -72.19 363.96 3.06 -69.13 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.29 Total: 24.41 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.52 Total: 19.10 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -5.69 Total: -118.01 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.09 Total: -36.58 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -72.19 3.06 -69.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.191 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds