Wall clock time and date at job start Tue Mar 31 2020 13:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39756 * 125.83380 * 2 1 4 4 C 1.36109 * 107.82751 * 180.02562 * 3 2 1 5 5 N 1.39483 * 126.21937 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99541 * 359.97438 * 5 4 3 7 7 O 1.21297 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99877 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.30332 * 39.99390 * 8 6 5 10 10 C 1.52921 * 109.29893 * 280.41617 * 8 6 5 11 11 C 1.53270 * 108.71611 * 188.73840 * 10 8 6 12 12 C 1.53071 * 108.24475 * 67.81178 * 11 10 8 13 13 C 1.50176 * 109.89500 * 311.03564 * 12 11 10 14 14 O 1.21279 * 118.24750 * 197.55920 * 13 12 11 15 15 N 1.33351 * 123.50763 * 17.58194 * 13 12 11 16 16 C 1.46496 * 117.94845 * 177.79982 * 15 13 12 17 17 N 1.35257 * 107.56798 * 359.97438 * 4 3 2 18 18 C 1.46506 * 126.04976 * 179.97438 * 17 4 3 19 19 C 1.50696 * 109.46871 * 89.99563 * 18 17 4 20 20 H 1.07999 * 120.00319 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99717 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 N 1.30844 * 125.84159 * 180.32536 * 2 1 3 28 28 H 1.09005 * 109.47452 * 90.00391 * 1 2 3 29 29 H 1.09006 * 109.46986 * 210.00044 * 1 2 3 30 30 H 1.08994 * 109.47384 * 329.99644 * 1 2 3 31 31 H 1.07995 * 126.08953 * 359.97438 * 3 2 1 32 32 H 0.96992 * 120.00001 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.60158 * 308.68884 * 10 8 6 34 34 H 1.08996 * 109.60679 * 69.17465 * 10 8 6 35 35 H 1.09003 * 109.81399 * 308.10668 * 11 10 8 36 36 H 1.08998 * 109.74276 * 187.47327 * 11 10 8 37 37 H 1.09000 * 109.40037 * 190.90519 * 12 11 10 38 38 H 1.09004 * 109.33158 * 71.12681 * 12 11 10 39 39 H 1.09005 * 109.47001 * 269.97670 * 16 15 13 40 40 H 1.08992 * 109.47072 * 29.97873 * 16 15 13 41 41 H 1.08999 * 109.46907 * 149.98020 * 16 15 13 42 42 H 1.09005 * 109.46943 * 329.99883 * 18 17 4 43 43 H 1.09002 * 109.47064 * 210.00146 * 18 17 4 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7512 1.5277 -0.0013 6 6 4.6155 2.8686 -0.0020 7 8 3.5094 3.3663 -0.0024 8 6 5.8381 3.7496 -0.0033 9 1 6.5908 3.3205 -0.6647 10 6 6.4017 3.8342 1.4158 11 6 7.5043 4.8984 1.4444 12 6 6.8550 6.2673 1.2261 13 6 5.9362 6.2136 0.0394 14 8 5.5950 7.2599 -0.4701 15 7 5.4750 5.0770 -0.4837 16 6 4.5454 5.1681 -1.6123 17 7 3.6092 -0.6402 -0.0004 18 6 4.7871 -1.5115 -0.0013 19 6 5.1923 -1.8098 1.4191 20 1 4.6287 -1.3926 2.2405 21 6 6.2828 -2.6155 1.6702 22 7 6.6362 -2.8763 2.9098 23 14 7.2581 -3.3364 0.2495 24 1 6.6847 -4.6536 -0.1267 25 1 7.1908 -2.4166 -0.9144 26 1 8.6743 -3.5122 0.6603 27 7 2.2731 -1.0607 -0.0060 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.9900 2.1597 -0.0004 32 1 5.6357 1.1297 -0.0013 33 1 5.6067 4.1089 2.1092 34 1 6.8215 2.8696 1.7007 35 1 8.2262 4.7040 0.6512 36 1 8.0077 4.8811 2.4111 37 1 7.6310 7.0121 1.0497 38 1 6.2848 6.5419 2.1135 39 1 3.5225 5.2106 -1.2380 40 1 4.7596 6.0687 -2.1876 41 1 4.6625 4.2925 -2.2509 42 1 5.6080 -1.0120 -0.5161 43 1 4.5495 -2.4431 -0.5148 44 1 7.4031 -3.4434 3.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906374908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:47 Heat of formation + Delta-G solvation = 14.489730 kcal Electronic energy + Delta-G solvation = -27594.321233 eV Core-core repulsion = 23741.752102 eV Total energy + Delta-G solvation = -3852.569131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42158 -40.63582 -39.14320 -36.48171 -35.07613 -34.22380 -33.81000 -32.25956 -30.65359 -29.52858 -28.29650 -27.25910 -26.39859 -25.37294 -22.71388 -22.53708 -21.76483 -19.99044 -19.56749 -18.85342 -17.40860 -17.25873 -16.91452 -16.66638 -16.38947 -15.69680 -15.33945 -14.89162 -14.61731 -14.40732 -14.32727 -13.99120 -13.75774 -13.69782 -13.22894 -12.84635 -12.72389 -12.60275 -12.44181 -12.28566 -12.22735 -11.96856 -11.90095 -11.82562 -11.34243 -11.26118 -11.20235 -10.91428 -10.59807 -10.32973 -10.28560 -9.86981 -9.83500 -9.69188 -8.93452 -8.85311 -8.05929 -7.60806 -6.40883 -4.45885 1.97007 2.29838 2.57915 2.77933 2.97718 3.02505 3.08241 3.12883 3.44012 3.54501 4.06938 4.20016 4.25704 4.31213 4.45653 4.65373 4.82854 4.85390 5.05587 5.21436 5.25734 5.37599 5.43494 5.50523 5.54824 5.57743 5.62313 5.82447 5.89805 5.93798 5.96347 6.03735 6.07918 6.13431 6.21813 6.26701 6.53019 6.64485 7.11914 7.17768 7.32396 7.40527 7.63003 7.94363 8.02940 8.18367 8.47008 8.65088 9.13502 10.71162 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.004372 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.111890 B = 6402.304673 C = 8247.455461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.056 3.944 3 C -0.290 4.290 4 C 0.303 3.697 5 N -0.635 5.635 6 C 0.510 3.490 7 O -0.498 6.498 8 C 0.136 3.864 9 H 0.103 0.897 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.136 4.136 13 C 0.521 3.479 14 O -0.553 6.553 15 N -0.587 5.587 16 C 0.078 3.922 17 N -0.343 5.343 18 C 0.229 3.771 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.269 1.269 25 H -0.266 1.266 26 H -0.279 1.279 27 N -0.281 5.281 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.416 0.584 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 13.191 -5.843 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.322 4.322 4 C 0.081 3.919 5 N -0.282 5.282 6 C 0.294 3.706 7 O -0.370 6.370 8 C 0.027 3.973 9 H 0.121 0.879 10 C -0.171 4.171 11 C -0.158 4.158 12 C -0.176 4.176 13 C 0.310 3.690 14 O -0.431 6.431 15 N -0.320 5.320 16 C -0.064 4.064 17 N -0.127 5.127 18 C 0.110 3.890 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.518 5.518 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.190 1.190 26 H -0.204 1.204 27 N -0.106 5.106 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.253 0.747 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.243 12.681 -5.984 14.077 hybrid contribution 1.217 -0.215 -0.471 1.323 sum 2.460 12.466 -6.455 14.252 Atomic orbital electron populations 1.20043 0.87369 1.02676 1.02140 1.22058 0.96622 0.90924 1.01339 1.21278 0.88959 1.00525 1.21411 1.17868 0.87956 0.83062 1.02982 1.42708 1.08369 1.05383 1.71767 1.20683 0.91404 0.81548 0.76967 1.90670 1.26365 1.73398 1.46569 1.20869 0.94170 0.83342 0.98877 0.87946 1.21939 0.99557 1.02201 0.93374 1.21652 0.97431 0.92809 1.03917 1.21709 0.99226 0.99649 0.96987 1.20143 0.81226 0.82666 0.84978 1.90714 1.59908 1.31357 1.61120 1.46917 1.46760 1.04449 1.33850 1.21807 0.94102 1.02403 0.88108 1.48918 1.06229 1.01967 1.55631 1.19955 0.79230 0.90041 0.99754 1.21178 1.14218 1.32847 0.90268 0.90027 1.24817 0.96601 0.95158 0.95774 1.69870 1.26824 1.36438 1.18664 0.86918 0.80036 0.80749 0.82431 1.19455 1.19048 1.20437 1.77386 0.85778 1.21726 1.25722 0.91269 0.91339 0.90991 0.82003 0.74742 0.89708 0.88154 0.90579 0.89515 0.87949 0.87980 0.90755 0.90435 0.91851 0.94319 0.93142 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.00 0.38 -0.52 16 2 C 0.06 1.06 7.21 -82.45 -0.59 0.47 16 3 C -0.29 -5.55 9.58 -39.78 -0.38 -5.93 16 4 C 0.30 5.87 7.66 -153.15 -1.17 4.69 16 5 N -0.63 -9.67 5.42 -11.46 -0.06 -9.74 16 6 C 0.51 7.01 6.27 -10.99 -0.07 6.94 16 7 O -0.50 -8.17 11.49 5.54 0.06 -8.11 16 8 C 0.14 1.38 3.09 -69.52 -0.21 1.17 16 9 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 10 C -0.13 -1.15 5.27 -26.63 -0.14 -1.29 16 11 C -0.12 -0.81 6.04 -26.55 -0.16 -0.97 16 12 C -0.14 -1.13 6.02 -28.10 -0.17 -1.30 16 13 C 0.52 6.40 7.47 -11.87 -0.09 6.31 16 14 O -0.55 -8.78 16.18 5.56 0.09 -8.69 16 15 N -0.59 -6.88 2.96 -176.51 -0.52 -7.41 16 16 C 0.08 0.94 8.70 59.84 0.52 1.46 16 17 N -0.34 -7.44 3.60 -61.57 -0.22 -7.67 16 18 C 0.23 5.09 5.07 -5.19 -0.03 5.06 16 19 C -0.55 -14.24 9.94 -34.44 -0.34 -14.58 16 20 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 21 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.88 -24.64 13.96 55.43 0.77 -23.87 16 23 Si 0.87 18.68 27.47 -169.99 -4.67 14.01 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.21 6.54 56.52 0.37 -4.84 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 N -0.28 -6.20 12.56 33.65 0.42 -5.77 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.16 3.01 5.83 -52.49 -0.31 2.71 16 32 H 0.42 5.57 7.96 -40.82 -0.33 5.24 16 33 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.02 6.96 -51.93 -0.36 0.66 16 40 H 0.08 0.94 7.13 -51.93 -0.37 0.57 16 41 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 42 H 0.04 0.77 6.56 -51.93 -0.34 0.43 16 43 H 0.05 1.14 7.57 -51.93 -0.39 0.74 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -33.85 360.11 -7.57 -41.42 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.31 Total: 6.86 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.56 Total: 3.53 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.39 Total: -54.45 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.15 Total: -16.79 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.67 Total: 14.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.85 -7.57 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.908 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds