Wall clock time and date at job start Tue Mar 31 2020 13:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39756 * 125.83380 * 2 1 4 4 C 1.36109 * 107.82751 * 180.02562 * 3 2 1 5 5 N 1.39483 * 126.21937 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99541 * 359.97438 * 5 4 3 7 7 O 1.21297 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99877 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.30332 * 39.99390 * 8 6 5 10 10 C 1.52921 * 109.29893 * 280.41617 * 8 6 5 11 11 C 1.53270 * 108.71611 * 188.73840 * 10 8 6 12 12 C 1.53071 * 108.24475 * 67.81178 * 11 10 8 13 13 C 1.50176 * 109.89500 * 311.03564 * 12 11 10 14 14 O 1.21279 * 118.24750 * 197.55920 * 13 12 11 15 15 N 1.33351 * 123.50763 * 17.58194 * 13 12 11 16 16 C 1.46496 * 117.94845 * 177.79982 * 15 13 12 17 17 N 1.35257 * 107.56798 * 359.97438 * 4 3 2 18 18 C 1.46506 * 126.04976 * 179.97438 * 17 4 3 19 19 C 1.50696 * 109.46871 * 89.99563 * 18 17 4 20 20 H 1.07999 * 120.00319 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99717 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 N 1.30844 * 125.84159 * 180.32536 * 2 1 3 28 28 H 1.09005 * 109.47452 * 90.00391 * 1 2 3 29 29 H 1.09006 * 109.46986 * 210.00044 * 1 2 3 30 30 H 1.08994 * 109.47384 * 329.99644 * 1 2 3 31 31 H 1.07995 * 126.08953 * 359.97438 * 3 2 1 32 32 H 0.96992 * 120.00001 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.60158 * 308.68884 * 10 8 6 34 34 H 1.08996 * 109.60679 * 69.17465 * 10 8 6 35 35 H 1.09003 * 109.81399 * 308.10668 * 11 10 8 36 36 H 1.08998 * 109.74276 * 187.47327 * 11 10 8 37 37 H 1.09000 * 109.40037 * 190.90519 * 12 11 10 38 38 H 1.09004 * 109.33158 * 71.12681 * 12 11 10 39 39 H 1.09005 * 109.47001 * 269.97670 * 16 15 13 40 40 H 1.08992 * 109.47072 * 29.97873 * 16 15 13 41 41 H 1.08999 * 109.46907 * 149.98020 * 16 15 13 42 42 H 1.09005 * 109.46943 * 329.99883 * 18 17 4 43 43 H 1.09002 * 109.47064 * 210.00146 * 18 17 4 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7512 1.5277 -0.0013 6 6 4.6155 2.8686 -0.0020 7 8 3.5094 3.3663 -0.0024 8 6 5.8381 3.7496 -0.0033 9 1 6.5908 3.3205 -0.6647 10 6 6.4017 3.8342 1.4158 11 6 7.5043 4.8984 1.4444 12 6 6.8550 6.2673 1.2261 13 6 5.9362 6.2136 0.0394 14 8 5.5950 7.2599 -0.4701 15 7 5.4750 5.0770 -0.4837 16 6 4.5454 5.1681 -1.6123 17 7 3.6092 -0.6402 -0.0004 18 6 4.7871 -1.5115 -0.0013 19 6 5.1923 -1.8098 1.4191 20 1 4.6287 -1.3926 2.2405 21 6 6.2828 -2.6155 1.6702 22 7 6.6362 -2.8763 2.9098 23 14 7.2581 -3.3364 0.2495 24 1 6.6847 -4.6536 -0.1267 25 1 7.1908 -2.4166 -0.9144 26 1 8.6743 -3.5122 0.6603 27 7 2.2731 -1.0607 -0.0060 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.9900 2.1597 -0.0004 32 1 5.6357 1.1297 -0.0013 33 1 5.6067 4.1089 2.1092 34 1 6.8215 2.8696 1.7007 35 1 8.2262 4.7040 0.6512 36 1 8.0077 4.8811 2.4111 37 1 7.6310 7.0121 1.0497 38 1 6.2848 6.5419 2.1135 39 1 3.5225 5.2106 -1.2380 40 1 4.7596 6.0687 -2.1876 41 1 4.6625 4.2925 -2.2509 42 1 5.6080 -1.0120 -0.5161 43 1 4.5495 -2.4431 -0.5148 44 1 7.4031 -3.4434 3.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906374908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:46 Heat of formation + Delta-G solvation = -8.961706 kcal Electronic energy + Delta-G solvation = -27595.338164 eV Core-core repulsion = 23741.752102 eV Total energy + Delta-G solvation = -3853.586062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65084 -41.83728 -40.32920 -37.44129 -36.39714 -35.63369 -34.96485 -33.98377 -31.70694 -30.97856 -29.65720 -28.16835 -28.00974 -26.29021 -24.39731 -23.30817 -23.04642 -21.36932 -20.93131 -19.70531 -19.23816 -18.68732 -18.06644 -17.59645 -17.53761 -16.82077 -16.61680 -16.34240 -15.94458 -15.60005 -15.33831 -15.27210 -14.84300 -14.68208 -14.45839 -14.44600 -14.11815 -13.79365 -13.58865 -13.51680 -13.26786 -13.15575 -13.02607 -12.91180 -12.63541 -12.56903 -12.10313 -12.01818 -11.86389 -11.82933 -11.76741 -11.54436 -11.17451 -10.90384 -10.75170 -9.86565 -9.62651 -9.10558 -8.39786 -6.52491 0.67406 1.12686 1.36151 1.40251 1.47813 1.49325 1.57447 1.85897 2.01030 2.19285 2.26694 2.92266 3.20969 3.46456 3.54635 3.77128 3.80288 3.95795 4.12785 4.20094 4.30924 4.46912 4.51825 4.56725 4.58529 4.64493 4.72843 4.77503 4.81427 4.87322 4.91173 4.95105 4.96616 5.02445 5.12749 5.18128 5.21247 5.22686 5.27769 5.86286 5.96926 6.12754 6.27191 6.33993 6.51993 6.83492 6.96639 7.02879 7.12512 8.76302 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.004372 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.111890 B = 6402.304673 C = 8247.455461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.060 3.940 3 C -0.305 4.305 4 C 0.304 3.696 5 N -0.630 5.630 6 C 0.511 3.489 7 O -0.525 6.525 8 C 0.142 3.858 9 H 0.140 0.860 10 C -0.133 4.133 11 C -0.110 4.110 12 C -0.131 4.131 13 C 0.514 3.486 14 O -0.596 6.596 15 N -0.588 5.588 16 C 0.081 3.919 17 N -0.364 5.364 18 C 0.237 3.763 19 C -0.552 4.552 20 H 0.023 0.977 21 C 0.028 3.972 22 N -0.933 5.933 23 Si 0.947 3.053 24 H -0.273 1.273 25 H -0.229 1.229 26 H -0.273 1.273 27 N -0.328 5.328 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.166 0.834 32 H 0.426 0.574 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 13.529 -7.336 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C -0.337 4.337 4 C 0.082 3.918 5 N -0.279 5.279 6 C 0.297 3.703 7 O -0.399 6.399 8 C 0.035 3.965 9 H 0.158 0.842 10 C -0.171 4.171 11 C -0.147 4.147 12 C -0.171 4.171 13 C 0.305 3.695 14 O -0.477 6.477 15 N -0.320 5.320 16 C -0.062 4.062 17 N -0.149 5.149 18 C 0.117 3.883 19 C -0.590 4.590 20 H 0.042 0.958 21 C -0.172 4.172 22 N -0.571 5.571 23 Si 0.768 3.232 24 H -0.199 1.199 25 H -0.152 1.152 26 H -0.198 1.198 27 N -0.153 5.153 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.183 0.817 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.165 13.033 -7.476 15.355 hybrid contribution 0.482 -0.245 0.090 0.548 sum 3.647 12.788 -7.386 15.211 Atomic orbital electron populations 1.20227 0.84156 1.03754 1.03947 1.22847 0.98673 0.90164 0.98871 1.21459 0.89246 1.00711 1.22265 1.18210 0.89452 0.82686 1.01462 1.42829 1.07722 1.05542 1.71773 1.21457 0.92302 0.81075 0.75423 1.90661 1.27995 1.73679 1.47559 1.21103 0.92748 0.81809 1.00888 0.84224 1.22005 0.99820 1.03619 0.91693 1.21657 0.96693 0.90598 1.05782 1.21766 0.98886 1.01330 0.95084 1.20933 0.81214 0.81955 0.85421 1.90693 1.61653 1.32806 1.62592 1.47043 1.46350 1.05115 1.33508 1.21705 0.93177 1.02829 0.88461 1.48838 1.06079 1.02708 1.57279 1.19803 0.80478 0.90775 0.97238 1.21191 1.13930 1.33009 0.90907 0.95811 1.25768 0.97553 0.95085 0.98812 1.70029 1.27835 1.37599 1.21602 0.85742 0.77951 0.79997 0.79464 1.19853 1.15154 1.19819 1.77325 0.86371 1.23414 1.28161 0.88979 0.91014 0.89109 0.81652 0.73599 0.91312 0.87104 0.88877 0.87395 0.86427 0.87420 0.92895 0.90845 0.90532 0.90967 0.93321 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.23 0.74 -0.94 16 2 C 0.06 2.27 7.21 43.07 0.31 2.58 16 3 C -0.31 -11.66 9.58 22.14 0.21 -11.45 16 4 C 0.30 11.68 7.66 131.32 1.01 12.69 16 5 N -0.63 -18.38 5.42 -308.55 -1.67 -20.05 16 6 C 0.51 13.42 6.27 87.66 0.55 13.97 16 7 O -0.53 -17.12 11.49 -3.08 -0.04 -17.16 16 8 C 0.14 2.55 3.09 44.36 0.14 2.69 16 9 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 10 C -0.13 -1.98 5.27 30.66 0.16 -1.82 16 11 C -0.11 -1.08 6.04 30.71 0.19 -0.90 16 12 C -0.13 -1.86 6.02 29.71 0.18 -1.68 16 13 C 0.51 11.99 7.47 87.71 0.65 12.64 16 14 O -0.60 -18.84 16.18 -3.03 -0.05 -18.88 16 15 N -0.59 -12.97 2.96 -831.54 -2.46 -15.43 16 16 C 0.08 1.93 8.70 127.77 1.11 3.04 16 17 N -0.36 -15.83 3.60 -348.69 -1.26 -17.09 16 18 C 0.24 10.30 5.07 85.63 0.43 10.73 16 19 C -0.55 -29.26 9.94 25.60 0.25 -29.01 16 20 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 21 C 0.03 1.48 5.47 84.66 0.46 1.94 16 22 N -0.93 -53.15 13.96 21.45 0.30 -52.85 16 23 Si 0.95 37.17 27.47 68.60 1.88 39.06 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.23 -7.58 6.54 99.48 0.65 -6.93 16 26 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 27 N -0.33 -14.61 12.56 -47.45 -0.60 -15.21 16 28 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.17 6.17 5.83 -2.91 -0.02 6.15 16 32 H 0.43 10.47 7.96 -92.71 -0.74 9.73 16 33 H 0.07 1.26 8.10 -2.38 -0.02 1.24 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.09 0.67 8.13 -2.39 -0.02 0.65 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.05 1.48 6.96 -2.38 -0.02 1.47 16 40 H 0.07 1.80 7.13 -2.39 -0.02 1.78 16 41 H 0.08 1.57 7.75 -2.39 -0.02 1.56 16 42 H 0.07 2.64 6.56 -2.38 -0.02 2.62 16 43 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 44 H 0.27 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -77.84 360.11 2.75 -75.09 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.24 Total: 28.02 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.40 Total: 14.50 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.69 Total: -120.63 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.08 Total: -36.04 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 1.88 Total: 39.06 kcal Total: -77.84 2.75 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.125 kcal (2) G-P(sol) polarization free energy of solvation -77.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds