Wall clock time and date at job start Tue Mar 31 2020 13:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35235 * 126.06781 * 2 1 4 4 C 1.40413 * 107.86597 * 179.84651 * 3 2 1 5 5 N 1.40154 * 125.96884 * 180.12854 * 4 3 2 6 6 C 1.34775 * 120.00404 * 0.32321 * 5 4 3 7 7 O 1.21286 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99791 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.30211 * 331.75630 * 8 6 5 10 10 C 1.52915 * 109.30268 * 91.34142 * 8 6 5 11 11 C 1.53269 * 108.71880 * 171.25943 * 10 8 6 12 12 C 1.53067 * 108.24311 * 292.18540 * 11 10 8 13 13 C 1.50176 * 109.89723 * 48.96328 * 12 11 10 14 14 O 1.21276 * 118.25142 * 162.39479 * 13 12 11 15 15 N 1.33350 * 123.50374 * 342.41758 * 13 12 11 16 16 C 1.46503 * 117.94631 * 182.20050 * 15 13 12 17 17 N 1.31216 * 108.04906 * 0.42328 * 4 3 2 18 18 N 1.34972 * 126.06749 * 180.31152 * 2 1 3 19 19 C 1.46493 * 125.97745 * 359.96822 * 18 2 1 20 20 C 1.50697 * 109.47721 * 89.99890 * 19 18 2 21 21 H 1.08008 * 119.99484 * 359.97438 * 20 19 18 22 22 C 1.37870 * 120.00398 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00092 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46964 * 90.00292 * 24 22 20 26 26 H 1.48502 * 109.47355 * 210.00180 * 24 22 20 27 27 H 1.48500 * 109.47380 * 330.00203 * 24 22 20 28 28 H 1.08993 * 109.47185 * 269.68419 * 1 2 3 29 29 H 1.09000 * 109.46902 * 149.68604 * 1 2 3 30 30 H 1.08996 * 109.47019 * 29.69031 * 1 2 3 31 31 H 1.08006 * 126.06572 * 359.97438 * 3 2 1 32 32 H 0.97007 * 119.99681 * 180.31400 * 5 4 3 33 33 H 1.09001 * 109.60204 * 290.82122 * 10 8 6 34 34 H 1.09006 * 109.60758 * 51.30347 * 10 8 6 35 35 H 1.08994 * 109.71080 * 172.53404 * 11 10 8 36 36 H 1.08997 * 109.84489 * 51.90755 * 11 10 8 37 37 H 1.08997 * 109.39893 * 288.83328 * 12 11 10 38 38 H 1.09004 * 109.33171 * 169.05087 * 12 11 10 39 39 H 1.09002 * 109.46795 * 274.85746 * 16 15 13 40 40 H 1.08993 * 109.46957 * 34.85971 * 16 15 13 41 41 H 1.08998 * 109.47295 * 154.86590 * 16 15 13 42 42 H 1.08999 * 109.47098 * 210.00395 * 19 18 2 43 43 H 1.09007 * 109.46954 * 329.99485 * 19 18 2 44 44 H 0.96994 * 120.00179 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0036 5 7 4.7734 1.4750 0.0073 6 6 4.6366 2.8157 0.0142 7 8 3.5302 3.3124 0.0168 8 6 5.8586 3.6978 0.0188 9 1 6.6811 3.1713 0.5029 10 6 6.2487 4.0285 -1.4223 11 6 7.3495 5.0947 -1.4016 12 6 6.7434 6.3991 -0.8778 13 6 5.9730 6.1343 0.3838 14 8 5.7055 7.0748 1.1012 15 7 5.5676 4.9201 0.7576 16 6 4.7808 4.8077 1.9883 17 7 3.6337 -0.6576 -0.0036 18 7 2.3017 -1.0910 -0.0059 19 6 1.8501 -2.4846 -0.0129 20 6 1.6946 -2.9553 -1.4359 21 1 1.9101 -2.2833 -2.2536 22 6 1.2771 -4.2436 -1.6942 23 7 1.0141 -5.0617 -0.6986 24 14 1.0836 -4.8268 -3.4583 25 1 2.3644 -5.4123 -3.9293 26 1 0.0148 -5.8556 -3.5252 27 1 0.7178 -3.6761 -4.3228 28 1 -0.3633 -0.0057 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8927 -0.5090 31 1 1.9719 2.1211 -0.0004 32 1 5.6584 1.0777 0.0050 33 1 6.6226 3.1310 -1.9151 34 1 5.3789 4.4076 -1.9589 35 1 7.7326 5.2472 -2.4105 36 1 8.1599 4.7772 -0.7454 37 1 6.0737 6.8150 -1.6305 38 1 7.5426 7.1109 -0.6713 39 1 5.4525 4.7444 2.8444 40 1 4.1414 5.6842 2.0921 41 1 4.1633 3.9106 1.9441 42 1 2.5849 -3.1072 0.4975 43 1 0.8917 -2.5585 0.5012 44 1 0.7208 -5.9682 -0.8803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907192109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:50 Heat of formation + Delta-G solvation = 10.609025 kcal Electronic energy + Delta-G solvation = -26916.476818 eV Core-core repulsion = 23063.739407 eV Total energy + Delta-G solvation = -3852.737411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40056 -40.57995 -39.24640 -36.57097 -35.11079 -34.29985 -33.46438 -31.65840 -31.03906 -30.22691 -27.40386 -26.86061 -26.43727 -25.47137 -23.13009 -22.65706 -21.71333 -19.99483 -19.48269 -18.91343 -17.30215 -17.00697 -16.77372 -16.74334 -16.14264 -15.66022 -15.26466 -15.20535 -14.64631 -14.45027 -14.38799 -14.08048 -13.87911 -13.85282 -13.07087 -12.74239 -12.53846 -12.50018 -12.39905 -12.37785 -12.10071 -11.92475 -11.73731 -11.48016 -11.43830 -11.39048 -11.12427 -10.89253 -10.52620 -10.32526 -10.20500 -9.96349 -9.75875 -9.60852 -8.97950 -8.69744 -8.04896 -7.57477 -6.31067 -4.39121 1.98444 2.26960 2.54067 2.72603 2.88967 3.17703 3.24255 3.28437 3.57290 3.67911 4.12944 4.18021 4.24003 4.28324 4.34135 4.57460 4.72046 4.95748 5.02705 5.19923 5.26460 5.30677 5.35378 5.40884 5.42125 5.48702 5.61366 5.70761 5.79055 5.85069 6.00649 6.03597 6.12231 6.38895 6.42759 6.60980 6.85566 6.98047 7.10986 7.30074 7.49588 7.61187 7.82467 7.87293 7.95822 8.02735 8.54388 8.68434 9.27643 10.76299 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.002646 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.185620 B =10579.227688 C =11138.980513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.260 3.740 5 N -0.624 5.624 6 C 0.509 3.491 7 O -0.500 6.500 8 C 0.135 3.865 9 H 0.099 0.901 10 C -0.130 4.130 11 C -0.120 4.120 12 C -0.136 4.136 13 C 0.521 3.479 14 O -0.550 6.550 15 N -0.586 5.586 16 C 0.073 3.927 17 N -0.317 5.317 18 N -0.314 5.314 19 C 0.258 3.742 20 C -0.538 4.538 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.412 0.588 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.899 16.945 0.305 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.321 4.321 4 C 0.007 3.993 5 N -0.272 5.272 6 C 0.292 3.708 7 O -0.372 6.372 8 C 0.027 3.973 9 H 0.117 0.883 10 C -0.168 4.168 11 C -0.158 4.158 12 C -0.176 4.176 13 C 0.309 3.691 14 O -0.428 6.428 15 N -0.319 5.319 16 C -0.069 4.069 17 N -0.148 5.148 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.176 0.824 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.585 16.456 0.722 19.579 hybrid contribution -0.092 -0.252 -0.946 0.983 sum 10.493 16.203 -0.224 19.305 Atomic orbital electron populations 1.20390 0.87846 1.03946 1.02614 1.21081 0.94981 0.87097 1.00651 1.21229 0.89690 0.99795 1.21360 1.18951 0.87051 0.89616 1.03670 1.42443 1.07832 1.04840 1.72114 1.20647 0.91321 0.81748 0.77052 1.90700 1.26312 1.73656 1.46549 1.20890 0.95198 0.85884 0.95349 0.88315 1.21900 1.00508 1.01339 0.93059 1.21650 0.97619 0.93602 1.02935 1.21702 1.00915 0.99608 0.95344 1.20137 0.79692 0.81643 0.87589 1.90725 1.57204 1.41040 1.53877 1.46927 1.54033 1.05686 1.25288 1.21870 0.95715 1.04429 0.84880 1.77255 1.00079 1.08406 1.29031 1.49026 1.00901 1.07869 1.51888 1.19714 0.96032 0.71214 0.99002 1.21309 1.47012 0.98002 0.91295 0.91735 1.24928 0.94607 0.96038 0.98179 1.69916 1.44795 1.06983 1.31183 0.86351 0.78052 0.78592 0.83673 1.20316 1.20841 1.19636 0.91007 0.89833 0.90585 0.82402 0.75288 0.88645 0.89636 0.89656 0.90589 0.87954 0.87944 0.92680 0.90257 0.90057 0.92950 0.92732 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.89 36.01 0.36 -1.12 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.63 9.52 -39.83 -0.38 -6.01 16 4 C 0.26 4.88 8.11 -154.39 -1.25 3.63 16 5 N -0.62 -8.40 5.45 -11.13 -0.06 -8.46 16 6 C 0.51 6.35 5.67 -10.99 -0.06 6.29 16 7 O -0.50 -7.98 12.17 5.55 0.07 -7.91 16 8 C 0.14 1.17 3.13 -69.52 -0.22 0.95 16 9 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.13 -0.85 5.27 -26.64 -0.14 -0.99 16 11 C -0.12 -0.59 6.04 -26.56 -0.16 -0.75 16 12 C -0.14 -0.96 6.02 -28.10 -0.17 -1.13 16 13 C 0.52 5.90 7.46 -11.87 -0.09 5.82 16 14 O -0.55 -8.38 16.30 5.56 0.09 -8.29 16 15 N -0.59 -6.31 2.95 -176.51 -0.52 -6.83 16 16 C 0.07 0.85 9.52 59.85 0.57 1.42 16 17 N -0.32 -6.92 12.59 31.44 0.40 -6.52 16 18 N -0.31 -7.17 3.59 -58.33 -0.21 -7.37 16 19 C 0.26 6.42 5.81 -5.20 -0.03 6.39 16 20 C -0.54 -14.42 9.39 -34.44 -0.32 -14.74 16 21 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 24 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.16 2.99 5.92 -52.48 -0.31 2.68 16 32 H 0.41 4.19 8.82 -40.82 -0.36 3.83 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.31 8.13 -51.93 -0.42 -0.11 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.02 7.37 -51.93 -0.38 0.64 16 41 H 0.08 1.01 5.50 -51.93 -0.29 0.73 16 42 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.05 1.35 7.65 -51.92 -0.40 0.95 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -34.02 364.00 -7.93 -41.95 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.33 Total: 3.43 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.56 Total: 2.73 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.34 Total: -52.99 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.16 Total: -16.20 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.02 -7.93 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907192109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.557 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds