Wall clock time and date at job start Tue Mar 31 2020 13:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35235 * 126.06781 * 2 1 4 4 C 1.40413 * 107.86597 * 179.84651 * 3 2 1 5 5 N 1.40154 * 125.96884 * 180.12854 * 4 3 2 6 6 C 1.34775 * 120.00404 * 0.32321 * 5 4 3 7 7 O 1.21286 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99791 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.30211 * 331.75630 * 8 6 5 10 10 C 1.52915 * 109.30268 * 91.34142 * 8 6 5 11 11 C 1.53269 * 108.71880 * 171.25943 * 10 8 6 12 12 C 1.53067 * 108.24311 * 292.18540 * 11 10 8 13 13 C 1.50176 * 109.89723 * 48.96328 * 12 11 10 14 14 O 1.21276 * 118.25142 * 162.39479 * 13 12 11 15 15 N 1.33350 * 123.50374 * 342.41758 * 13 12 11 16 16 C 1.46503 * 117.94631 * 182.20050 * 15 13 12 17 17 N 1.31216 * 108.04906 * 0.42328 * 4 3 2 18 18 N 1.34972 * 126.06749 * 180.31152 * 2 1 3 19 19 C 1.46493 * 125.97745 * 359.96822 * 18 2 1 20 20 C 1.50697 * 109.47721 * 89.99890 * 19 18 2 21 21 H 1.08008 * 119.99484 * 359.97438 * 20 19 18 22 22 C 1.37870 * 120.00398 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00092 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46964 * 90.00292 * 24 22 20 26 26 H 1.48502 * 109.47355 * 210.00180 * 24 22 20 27 27 H 1.48500 * 109.47380 * 330.00203 * 24 22 20 28 28 H 1.08993 * 109.47185 * 269.68419 * 1 2 3 29 29 H 1.09000 * 109.46902 * 149.68604 * 1 2 3 30 30 H 1.08996 * 109.47019 * 29.69031 * 1 2 3 31 31 H 1.08006 * 126.06572 * 359.97438 * 3 2 1 32 32 H 0.97007 * 119.99681 * 180.31400 * 5 4 3 33 33 H 1.09001 * 109.60204 * 290.82122 * 10 8 6 34 34 H 1.09006 * 109.60758 * 51.30347 * 10 8 6 35 35 H 1.08994 * 109.71080 * 172.53404 * 11 10 8 36 36 H 1.08997 * 109.84489 * 51.90755 * 11 10 8 37 37 H 1.08997 * 109.39893 * 288.83328 * 12 11 10 38 38 H 1.09004 * 109.33171 * 169.05087 * 12 11 10 39 39 H 1.09002 * 109.46795 * 274.85746 * 16 15 13 40 40 H 1.08993 * 109.46957 * 34.85971 * 16 15 13 41 41 H 1.08998 * 109.47295 * 154.86590 * 16 15 13 42 42 H 1.08999 * 109.47098 * 210.00395 * 19 18 2 43 43 H 1.09007 * 109.46954 * 329.99485 * 19 18 2 44 44 H 0.96994 * 120.00179 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0036 5 7 4.7734 1.4750 0.0073 6 6 4.6366 2.8157 0.0142 7 8 3.5302 3.3124 0.0168 8 6 5.8586 3.6978 0.0188 9 1 6.6811 3.1713 0.5029 10 6 6.2487 4.0285 -1.4223 11 6 7.3495 5.0947 -1.4016 12 6 6.7434 6.3991 -0.8778 13 6 5.9730 6.1343 0.3838 14 8 5.7055 7.0748 1.1012 15 7 5.5676 4.9201 0.7576 16 6 4.7808 4.8077 1.9883 17 7 3.6337 -0.6576 -0.0036 18 7 2.3017 -1.0910 -0.0059 19 6 1.8501 -2.4846 -0.0129 20 6 1.6946 -2.9553 -1.4359 21 1 1.9101 -2.2833 -2.2536 22 6 1.2771 -4.2436 -1.6942 23 7 1.0141 -5.0617 -0.6986 24 14 1.0836 -4.8268 -3.4583 25 1 2.3644 -5.4123 -3.9293 26 1 0.0148 -5.8556 -3.5252 27 1 0.7178 -3.6761 -4.3228 28 1 -0.3633 -0.0057 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8927 -0.5090 31 1 1.9719 2.1211 -0.0004 32 1 5.6584 1.0777 0.0050 33 1 6.6226 3.1310 -1.9151 34 1 5.3789 4.4076 -1.9589 35 1 7.7326 5.2472 -2.4105 36 1 8.1599 4.7772 -0.7454 37 1 6.0737 6.8150 -1.6305 38 1 7.5426 7.1109 -0.6713 39 1 5.4525 4.7444 2.8444 40 1 4.1414 5.6842 2.0921 41 1 4.1633 3.9106 1.9441 42 1 2.5849 -3.1072 0.4975 43 1 0.8917 -2.5585 0.5012 44 1 0.7208 -5.9682 -0.8803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907192109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:49 Heat of formation + Delta-G solvation = -12.227010 kcal Electronic energy + Delta-G solvation = -26917.467063 eV Core-core repulsion = 23063.739407 eV Total energy + Delta-G solvation = -3853.727656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51809 -41.85351 -40.36655 -37.44284 -36.41949 -35.35965 -35.00191 -33.15386 -32.67136 -31.13891 -28.65213 -28.17081 -27.90268 -26.42317 -24.88486 -23.28143 -22.93485 -21.35077 -20.90909 -19.65826 -18.81535 -18.38213 -17.97599 -17.62298 -17.44809 -16.96511 -16.55749 -16.42347 -16.07780 -15.68587 -15.27735 -15.24565 -14.87291 -14.55863 -14.43154 -14.33287 -13.83833 -13.76938 -13.60109 -13.51798 -13.27392 -13.12287 -12.98422 -12.85243 -12.69265 -12.60981 -12.25307 -12.08682 -11.96019 -11.84347 -11.58128 -11.36012 -11.19067 -10.75080 -10.72165 -9.89893 -9.60663 -9.17431 -8.33247 -6.50895 0.79613 1.17977 1.28469 1.38567 1.39958 1.50842 1.57811 1.89156 2.16626 2.26154 2.37887 2.96922 3.29914 3.48883 3.60375 3.84090 3.84915 4.00658 4.13666 4.17815 4.30249 4.44265 4.49862 4.56512 4.72271 4.74515 4.77330 4.81426 4.84492 4.86676 4.96017 4.96787 4.99259 5.03114 5.11562 5.21448 5.24677 5.31348 5.53278 5.80447 5.90294 6.18233 6.23619 6.31712 6.61275 6.88556 7.03516 7.05972 7.20369 8.72885 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.002646 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.185620 B =10579.227688 C =11138.980513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.273 3.727 5 N -0.614 5.614 6 C 0.512 3.488 7 O -0.535 6.535 8 C 0.141 3.859 9 H 0.139 0.861 10 C -0.130 4.130 11 C -0.109 4.109 12 C -0.132 4.132 13 C 0.513 3.487 14 O -0.598 6.598 15 N -0.589 5.589 16 C 0.076 3.924 17 N -0.352 5.352 18 N -0.342 5.342 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.051 0.949 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.269 1.269 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.429 0.571 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.050 0.950 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.582 17.625 -1.263 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.329 4.329 4 C 0.019 3.981 5 N -0.264 5.264 6 C 0.298 3.702 7 O -0.409 6.409 8 C 0.034 3.966 9 H 0.156 0.844 10 C -0.168 4.168 11 C -0.147 4.147 12 C -0.171 4.171 13 C 0.304 3.696 14 O -0.480 6.480 15 N -0.321 5.321 16 C -0.067 4.067 17 N -0.183 5.183 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.591 4.591 21 H 0.069 0.931 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.194 1.194 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.182 0.818 32 H 0.268 0.732 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.303 17.133 -0.853 21.110 hybrid contribution -0.610 -0.346 -0.395 0.805 sum 11.693 16.787 -1.248 20.496 Atomic orbital electron populations 1.20498 0.85621 1.04328 1.04050 1.21723 0.96593 0.86556 0.99456 1.21396 0.90119 0.99724 1.21653 1.19269 0.88676 0.89183 1.00992 1.42543 1.07196 1.04765 1.71921 1.21474 0.92219 0.81319 0.75204 1.90684 1.28273 1.74118 1.47843 1.21182 0.93766 0.84399 0.97298 0.84379 1.22002 1.00651 1.03063 0.91056 1.21662 0.97004 0.91319 1.04682 1.21775 1.00891 1.01431 0.93049 1.21008 0.79325 0.80921 0.88383 1.90702 1.59221 1.42428 1.55646 1.47076 1.53483 1.06526 1.24978 1.21754 0.95884 1.02829 0.86236 1.77177 0.99944 1.09938 1.31203 1.48790 1.01810 1.07483 1.54324 1.19243 0.94902 0.72420 0.97790 1.21435 1.47552 0.98337 0.91758 0.93118 1.25727 0.93943 0.95933 1.02210 1.70000 1.45105 1.07411 1.33144 0.85362 0.78281 0.78192 0.78711 1.19876 1.19710 1.19364 0.88978 0.91422 0.88096 0.81833 0.73224 0.86225 0.91308 0.87095 0.88932 0.87403 0.86663 0.91250 0.92301 0.91115 0.95630 0.93189 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.89 71.24 0.70 -2.13 16 2 C 0.09 3.54 6.92 41.39 0.29 3.83 16 3 C -0.30 -11.53 9.52 22.11 0.21 -11.32 16 4 C 0.27 10.17 8.11 133.33 1.08 11.25 16 5 N -0.61 -15.53 5.45 -307.52 -1.68 -17.21 16 6 C 0.51 11.95 5.67 87.66 0.50 12.44 16 7 O -0.54 -16.78 12.17 -3.05 -0.04 -16.82 16 8 C 0.14 2.03 3.13 44.36 0.14 2.17 16 9 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 10 C -0.13 -1.24 5.27 30.66 0.16 -1.08 16 11 C -0.11 -0.59 6.04 30.71 0.19 -0.41 16 12 C -0.13 -1.51 6.02 29.71 0.18 -1.33 16 13 C 0.51 11.01 7.46 87.71 0.65 11.66 16 14 O -0.60 -18.30 16.30 -3.02 -0.05 -18.35 16 15 N -0.59 -11.81 2.95 -831.53 -2.45 -14.26 16 16 C 0.08 1.74 9.52 127.77 1.22 2.96 16 17 N -0.35 -15.56 12.59 -54.45 -0.69 -16.24 16 18 N -0.34 -15.94 3.59 -338.45 -1.22 -17.16 16 19 C 0.28 14.20 5.81 85.63 0.50 14.70 16 20 C -0.55 -30.25 9.39 25.60 0.24 -30.01 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 22 C 0.02 1.23 5.46 84.65 0.46 1.69 16 23 N -0.92 -51.05 13.29 21.45 0.28 -50.77 16 24 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.07 2.43 7.71 -2.39 -0.02 2.41 16 30 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.16 6.15 5.92 -2.91 -0.02 6.14 16 32 H 0.43 7.70 8.82 -92.70 -0.82 6.88 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.93 8.10 -2.38 -0.02 0.91 16 35 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.28 8.13 -2.39 -0.02 0.26 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.58 7.37 -2.39 -0.02 1.56 16 41 H 0.07 1.76 5.50 -2.39 -0.01 1.75 16 42 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 2.57 7.65 -2.38 -0.02 2.55 16 44 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -76.73 364.00 2.92 -73.81 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.21 Total: 18.45 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.52 Total: 14.42 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.75 Total: -115.64 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.09 Total: -35.16 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -76.73 2.92 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907192109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.581 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds