Wall clock time and date at job start Tue Mar 31 2020 13:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35235 * 126.07131 * 2 1 4 4 C 1.40418 * 107.86421 * 180.16206 * 3 2 1 5 5 N 1.40153 * 125.96847 * 179.83211 * 4 3 2 6 6 C 1.34778 * 120.00621 * 359.70994 * 5 4 3 7 7 O 1.21298 * 119.99534 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00435 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.30083 * 30.98377 * 8 6 5 10 10 C 1.52923 * 109.29729 * 271.40006 * 8 6 5 11 11 C 1.53346 * 108.67096 * 189.14177 * 10 8 6 12 12 C 1.53073 * 108.42806 * 67.53389 * 11 10 8 13 13 C 1.50175 * 109.88824 * 311.09540 * 12 11 10 14 14 O 1.21281 * 118.24726 * 197.58138 * 13 12 11 15 15 N 1.33361 * 123.50638 * 17.86720 * 13 12 11 16 16 C 1.46500 * 117.94285 * 177.46928 * 15 13 12 17 17 N 1.31211 * 108.05094 * 359.56558 * 4 3 2 18 18 N 1.34977 * 126.06764 * 179.68359 * 2 1 3 19 19 C 1.46500 * 125.97249 * 0.03416 * 18 2 1 20 20 C 1.50701 * 109.47215 * 269.97984 * 19 18 2 21 21 H 1.08006 * 119.99765 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00135 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99949 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46864 * 60.00430 * 24 22 20 26 26 H 1.48506 * 109.46876 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47162 * 300.00249 * 24 22 20 28 28 H 1.09000 * 109.46650 * 270.31876 * 1 2 3 29 29 H 1.09002 * 109.47065 * 30.31339 * 1 2 3 30 30 H 1.08992 * 109.47432 * 150.31799 * 1 2 3 31 31 H 1.07996 * 126.07165 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00076 * 179.71430 * 5 4 3 33 33 H 1.08993 * 109.60373 * 69.39243 * 10 8 6 34 34 H 1.08997 * 109.73842 * 308.97483 * 10 8 6 35 35 H 1.09004 * 109.67492 * 307.79709 * 11 10 8 36 36 H 1.09004 * 109.70342 * 187.28235 * 11 10 8 37 37 H 1.09001 * 109.39989 * 190.97117 * 12 11 10 38 38 H 1.08993 * 109.40109 * 71.22308 * 12 11 10 39 39 H 1.09000 * 109.47584 * 35.19015 * 16 15 13 40 40 H 1.09000 * 109.47056 * 155.18907 * 16 15 13 41 41 H 1.08997 * 109.47477 * 275.18788 * 16 15 13 42 42 H 1.09001 * 109.47667 * 29.98201 * 19 18 2 43 43 H 1.09000 * 109.46770 * 149.98198 * 19 18 2 44 44 H 0.96996 * 120.00273 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6372 0.6543 -0.0038 5 7 4.7735 1.4747 -0.0083 6 6 4.6369 2.8155 -0.0153 7 8 3.5303 3.3123 -0.0172 8 6 5.8588 3.6975 -0.0208 9 1 6.6667 3.1905 -0.5482 10 6 6.2902 3.9723 1.4204 11 6 7.3841 5.0468 1.4089 12 6 6.7605 6.3674 0.9503 13 6 5.9567 6.1462 -0.2987 14 8 5.6668 7.1115 -0.9733 15 7 5.5399 4.9456 -0.7030 16 6 4.7146 4.8765 -1.9115 17 7 3.6336 -0.6577 0.0035 18 7 2.3017 -1.0910 0.0060 19 6 1.8500 -2.4846 0.0130 20 6 1.6949 -2.9553 1.4362 21 1 1.9108 -2.2834 2.2538 22 6 1.2774 -4.2436 1.6946 23 7 1.0149 -5.0620 0.6992 24 14 1.0858 -4.8272 3.4588 25 1 0.0848 -3.9794 4.1547 26 1 0.6290 -6.2402 3.4659 27 1 2.3919 -4.7262 4.1582 28 1 -0.3632 0.0057 1.0277 29 1 -0.3633 0.8872 -0.5187 30 1 -0.3634 -0.8927 -0.5088 31 1 1.9721 2.1210 0.0004 32 1 5.6585 1.0774 -0.0065 33 1 6.6809 3.0575 1.8659 34 1 5.4367 4.3255 1.9991 35 1 8.1768 4.7562 0.7194 36 1 7.7949 5.1638 2.4118 37 1 7.5510 7.0904 0.7489 38 1 6.1105 6.7528 1.7357 39 1 5.0443 5.6358 -2.6206 40 1 4.8141 3.8896 -2.3634 41 1 3.6713 5.0526 -1.6496 42 1 0.8914 -2.5585 -0.5006 43 1 2.5847 -3.1072 -0.4975 44 1 0.7209 -5.9683 0.8809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907192110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:53 Heat of formation + Delta-G solvation = 9.326127 kcal Electronic energy + Delta-G solvation = -26917.685845 eV Core-core repulsion = 23064.892803 eV Total energy + Delta-G solvation = -3852.793042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36339 -40.57373 -39.21507 -36.56200 -35.09257 -34.29093 -33.45463 -31.66149 -31.03317 -30.21991 -27.40250 -26.84807 -26.43403 -25.46371 -23.13039 -22.65499 -21.70453 -19.97865 -19.46689 -18.92363 -17.28648 -16.97045 -16.75533 -16.73848 -16.12779 -15.63540 -15.25030 -15.21208 -14.65300 -14.43937 -14.37134 -14.05546 -13.86968 -13.80242 -13.09017 -12.73801 -12.53549 -12.49641 -12.41927 -12.33220 -12.19829 -11.89666 -11.74162 -11.47005 -11.46190 -11.37419 -11.15296 -10.86040 -10.55059 -10.32273 -10.22050 -9.95887 -9.74157 -9.61869 -8.93630 -8.68610 -8.04082 -7.56380 -6.30292 -4.38255 2.01943 2.27834 2.54376 2.73933 2.88812 3.19648 3.23891 3.27527 3.58276 3.68340 4.12792 4.18355 4.24332 4.28491 4.34379 4.57862 4.71947 4.95075 5.03591 5.15615 5.26310 5.29465 5.35242 5.41447 5.44783 5.51557 5.61559 5.70646 5.82217 5.84421 6.00630 6.05305 6.13610 6.36710 6.42960 6.60595 6.85742 6.99000 7.11250 7.31377 7.51147 7.61608 7.83184 7.87761 7.96465 8.05177 8.55302 8.68660 9.28269 10.77096 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002652 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.916406 B =10555.844670 C =11124.955125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.625 5.625 6 C 0.507 3.493 7 O -0.499 6.499 8 C 0.136 3.864 9 H 0.100 0.900 10 C -0.130 4.130 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.520 3.480 14 O -0.551 6.551 15 N -0.587 5.587 16 C 0.080 3.920 17 N -0.318 5.318 18 N -0.315 5.315 19 C 0.258 3.742 20 C -0.538 4.538 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.411 0.589 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.088 16.973 -0.517 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.273 5.273 6 C 0.291 3.709 7 O -0.371 6.371 8 C 0.027 3.973 9 H 0.118 0.882 10 C -0.168 4.168 11 C -0.158 4.158 12 C -0.175 4.175 13 C 0.309 3.691 14 O -0.429 6.429 15 N -0.320 5.320 16 C -0.062 4.062 17 N -0.148 5.148 18 N -0.097 5.097 19 C 0.141 3.859 20 C -0.576 4.576 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.176 0.824 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.763 16.492 -0.915 19.715 hybrid contribution -0.116 -0.283 0.983 1.030 sum 10.646 16.210 0.068 19.393 Atomic orbital electron populations 1.20344 0.87820 1.02897 1.03237 1.21081 0.94965 0.87136 1.00694 1.21219 0.89686 0.99769 1.21401 1.18947 0.87066 0.89600 1.03576 1.42425 1.07776 1.04839 1.72297 1.20680 0.91305 0.81729 0.77210 1.90693 1.26264 1.73629 1.46503 1.20897 0.94961 0.85255 0.96149 0.88235 1.21909 1.00368 1.01419 0.93120 1.21662 0.97597 0.93391 1.03164 1.21696 1.00556 0.99586 0.95711 1.20132 0.79977 0.81895 0.87089 1.90726 1.58006 1.38830 1.55372 1.46928 1.52186 1.05322 1.27581 1.21767 0.95934 1.02240 0.86285 1.77254 1.00038 1.08422 1.29118 1.49017 1.00916 1.07865 1.51908 1.19706 0.96010 0.71210 0.98985 1.21265 1.47081 0.97989 0.91274 0.91811 1.24924 0.94610 0.96020 0.98171 1.69904 1.44737 1.07040 1.31244 0.86408 0.78820 0.77708 0.83710 1.19912 1.20920 1.19973 0.90367 0.90785 0.90793 0.82407 0.75346 0.88623 0.89697 0.90618 0.89673 0.87933 0.87971 0.90536 0.91538 0.91147 0.92752 0.92967 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.11 36.01 0.36 -1.04 16 2 C 0.09 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.65 9.52 -39.83 -0.38 -6.03 16 4 C 0.26 4.92 8.11 -154.40 -1.25 3.67 16 5 N -0.63 -8.44 5.45 -11.13 -0.06 -8.50 16 6 C 0.51 6.35 5.91 -10.99 -0.06 6.28 16 7 O -0.50 -7.99 12.18 5.54 0.07 -7.92 16 8 C 0.14 1.16 3.09 -69.52 -0.21 0.95 16 9 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.13 -0.85 5.29 -26.59 -0.14 -0.99 16 11 C -0.12 -0.59 6.03 -26.51 -0.16 -0.75 16 12 C -0.14 -0.95 6.03 -28.10 -0.17 -1.12 16 13 C 0.52 5.87 7.47 -11.87 -0.09 5.78 16 14 O -0.55 -8.35 16.26 5.56 0.09 -8.26 16 15 N -0.59 -6.27 2.94 -176.50 -0.52 -6.79 16 16 C 0.08 0.92 8.68 59.85 0.52 1.44 16 17 N -0.32 -6.96 12.59 31.44 0.40 -6.56 16 18 N -0.31 -7.19 3.59 -58.32 -0.21 -7.40 16 19 C 0.26 6.45 5.99 -5.19 -0.03 6.42 16 20 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 21 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 24 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.23 7.07 -51.93 -0.37 0.87 16 31 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 32 H 0.41 4.19 8.82 -40.82 -0.36 3.83 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.08 0.31 8.13 -51.93 -0.42 -0.11 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.87 7.31 -51.93 -0.38 0.49 16 40 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 41 H 0.07 0.93 7.44 -51.93 -0.39 0.54 16 42 H 0.05 1.35 7.04 -51.93 -0.37 0.98 16 43 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -34.17 363.76 -7.97 -42.15 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.33 Total: 3.23 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.61 Total: 2.79 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.34 Total: -53.14 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.16 Total: -16.18 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.17 -7.97 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907192110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.471 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds