Wall clock time and date at job start Tue Mar 31 2020 13:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35235 * 126.07131 * 2 1 4 4 C 1.40418 * 107.86421 * 180.16206 * 3 2 1 5 5 N 1.40153 * 125.96847 * 179.83211 * 4 3 2 6 6 C 1.34778 * 120.00621 * 359.70994 * 5 4 3 7 7 O 1.21298 * 119.99534 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00435 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.30083 * 30.98377 * 8 6 5 10 10 C 1.52923 * 109.29729 * 271.40006 * 8 6 5 11 11 C 1.53346 * 108.67096 * 189.14177 * 10 8 6 12 12 C 1.53073 * 108.42806 * 67.53389 * 11 10 8 13 13 C 1.50175 * 109.88824 * 311.09540 * 12 11 10 14 14 O 1.21281 * 118.24726 * 197.58138 * 13 12 11 15 15 N 1.33361 * 123.50638 * 17.86720 * 13 12 11 16 16 C 1.46500 * 117.94285 * 177.46928 * 15 13 12 17 17 N 1.31211 * 108.05094 * 359.56558 * 4 3 2 18 18 N 1.34977 * 126.06764 * 179.68359 * 2 1 3 19 19 C 1.46500 * 125.97249 * 0.03416 * 18 2 1 20 20 C 1.50701 * 109.47215 * 269.97984 * 19 18 2 21 21 H 1.08006 * 119.99765 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00135 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99949 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46864 * 60.00430 * 24 22 20 26 26 H 1.48506 * 109.46876 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47162 * 300.00249 * 24 22 20 28 28 H 1.09000 * 109.46650 * 270.31876 * 1 2 3 29 29 H 1.09002 * 109.47065 * 30.31339 * 1 2 3 30 30 H 1.08992 * 109.47432 * 150.31799 * 1 2 3 31 31 H 1.07996 * 126.07165 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00076 * 179.71430 * 5 4 3 33 33 H 1.08993 * 109.60373 * 69.39243 * 10 8 6 34 34 H 1.08997 * 109.73842 * 308.97483 * 10 8 6 35 35 H 1.09004 * 109.67492 * 307.79709 * 11 10 8 36 36 H 1.09004 * 109.70342 * 187.28235 * 11 10 8 37 37 H 1.09001 * 109.39989 * 190.97117 * 12 11 10 38 38 H 1.08993 * 109.40109 * 71.22308 * 12 11 10 39 39 H 1.09000 * 109.47584 * 35.19015 * 16 15 13 40 40 H 1.09000 * 109.47056 * 155.18907 * 16 15 13 41 41 H 1.08997 * 109.47477 * 275.18788 * 16 15 13 42 42 H 1.09001 * 109.47667 * 29.98201 * 19 18 2 43 43 H 1.09000 * 109.46770 * 149.98198 * 19 18 2 44 44 H 0.96996 * 120.00273 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6372 0.6543 -0.0038 5 7 4.7735 1.4747 -0.0083 6 6 4.6369 2.8155 -0.0153 7 8 3.5303 3.3123 -0.0172 8 6 5.8588 3.6975 -0.0208 9 1 6.6667 3.1905 -0.5482 10 6 6.2902 3.9723 1.4204 11 6 7.3841 5.0468 1.4089 12 6 6.7605 6.3674 0.9503 13 6 5.9567 6.1462 -0.2987 14 8 5.6668 7.1115 -0.9733 15 7 5.5399 4.9456 -0.7030 16 6 4.7146 4.8765 -1.9115 17 7 3.6336 -0.6577 0.0035 18 7 2.3017 -1.0910 0.0060 19 6 1.8500 -2.4846 0.0130 20 6 1.6949 -2.9553 1.4362 21 1 1.9108 -2.2834 2.2538 22 6 1.2774 -4.2436 1.6946 23 7 1.0149 -5.0620 0.6992 24 14 1.0858 -4.8272 3.4588 25 1 0.0848 -3.9794 4.1547 26 1 0.6290 -6.2402 3.4659 27 1 2.3919 -4.7262 4.1582 28 1 -0.3632 0.0057 1.0277 29 1 -0.3633 0.8872 -0.5187 30 1 -0.3634 -0.8927 -0.5088 31 1 1.9721 2.1210 0.0004 32 1 5.6585 1.0774 -0.0065 33 1 6.6809 3.0575 1.8659 34 1 5.4367 4.3255 1.9991 35 1 8.1768 4.7562 0.7194 36 1 7.7949 5.1638 2.4118 37 1 7.5510 7.0904 0.7489 38 1 6.1105 6.7528 1.7357 39 1 5.0443 5.6358 -2.6206 40 1 4.8141 3.8896 -2.3634 41 1 3.6713 5.0526 -1.6496 42 1 0.8914 -2.5585 -0.5006 43 1 2.5847 -3.1072 -0.4975 44 1 0.7209 -5.9683 0.8809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907192110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:52 Heat of formation + Delta-G solvation = -13.633300 kcal Electronic energy + Delta-G solvation = -26918.681440 eV Core-core repulsion = 23064.892803 eV Total energy + Delta-G solvation = -3853.788637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49101 -41.83846 -40.33939 -37.43518 -36.40256 -35.35612 -34.98995 -33.15700 -32.66976 -31.13419 -28.64734 -28.16349 -27.90317 -26.41139 -24.88896 -23.27697 -22.93005 -21.33743 -20.89895 -19.66701 -18.81257 -18.36587 -17.94871 -17.60126 -17.43374 -16.93227 -16.52879 -16.43934 -16.07409 -15.70294 -15.26791 -15.24286 -14.82756 -14.56076 -14.42775 -14.30883 -13.82979 -13.77964 -13.59856 -13.53463 -13.26940 -13.12484 -13.03419 -12.86003 -12.66032 -12.58665 -12.24312 -12.11618 -11.97957 -11.82531 -11.58060 -11.37743 -11.21497 -10.74162 -10.71085 -9.86988 -9.60400 -9.16657 -8.32899 -6.50582 0.81736 1.18631 1.29954 1.39742 1.40373 1.49647 1.58224 1.89256 2.16933 2.26329 2.38147 2.97279 3.30953 3.49270 3.60572 3.84240 3.85041 4.00966 4.14992 4.17815 4.27898 4.41746 4.53079 4.56377 4.69619 4.73366 4.77446 4.84442 4.85141 4.88406 4.96221 4.97068 4.99295 5.03066 5.12566 5.21456 5.24678 5.31380 5.53330 5.80672 5.91077 6.19070 6.23753 6.32764 6.61081 6.90271 7.04080 7.07300 7.20507 8.73036 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002652 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.916406 B =10555.844670 C =11124.955125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.086 3.914 3 C -0.298 4.298 4 C 0.274 3.726 5 N -0.614 5.614 6 C 0.510 3.490 7 O -0.534 6.534 8 C 0.142 3.858 9 H 0.140 0.860 10 C -0.130 4.130 11 C -0.110 4.110 12 C -0.132 4.132 13 C 0.513 3.487 14 O -0.599 6.599 15 N -0.589 5.589 16 C 0.083 3.917 17 N -0.353 5.353 18 N -0.342 5.342 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.051 0.949 22 C 0.023 3.977 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.266 1.266 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.429 0.571 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.025 0.975 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.776 17.575 1.064 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.020 3.980 5 N -0.265 5.265 6 C 0.296 3.704 7 O -0.408 6.408 8 C 0.034 3.966 9 H 0.158 0.842 10 C -0.168 4.168 11 C -0.147 4.147 12 C -0.171 4.171 13 C 0.303 3.697 14 O -0.481 6.481 15 N -0.321 5.321 16 C -0.060 4.060 17 N -0.183 5.183 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.592 4.592 21 H 0.069 0.931 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.181 0.819 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.485 17.092 0.673 21.177 hybrid contribution -0.633 -0.352 0.435 0.845 sum 11.852 16.741 1.108 20.541 Atomic orbital electron populations 1.20464 0.85621 1.04124 1.03899 1.21719 0.96569 0.86589 0.99517 1.21390 0.90130 0.99696 1.21661 1.19268 0.88697 0.89168 1.00908 1.42527 1.07139 1.04759 1.72081 1.21526 0.92224 0.81304 0.75379 1.90682 1.28236 1.74093 1.47803 1.21193 0.93464 0.83632 0.98272 0.84233 1.22012 1.00493 1.03249 0.91030 1.21672 0.96979 0.91028 1.05003 1.21769 1.00447 1.01505 0.93416 1.21005 0.79680 0.81171 0.87802 1.90701 1.59982 1.40274 1.57102 1.47073 1.51641 1.06191 1.27211 1.21643 0.94833 1.02632 0.86914 1.77176 0.99904 1.09956 1.31274 1.48783 1.01828 1.07481 1.54327 1.19240 0.94906 0.72418 0.97787 1.21407 1.47639 0.98352 0.91762 0.93107 1.25727 0.93936 0.95911 1.02220 1.69992 1.45031 1.07439 1.33208 0.85422 0.78812 0.77624 0.78744 1.19093 1.19892 1.19866 0.89876 0.87751 0.91309 0.81857 0.73258 0.86167 0.91388 0.88933 0.87135 0.86647 0.87456 0.90936 0.90502 0.93533 0.93180 0.95653 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.72 10.11 71.24 0.72 -2.00 16 2 C 0.09 3.52 6.92 41.38 0.29 3.81 16 3 C -0.30 -11.55 9.52 22.11 0.21 -11.34 16 4 C 0.27 10.21 8.11 133.33 1.08 11.29 16 5 N -0.61 -15.52 5.45 -307.51 -1.68 -17.19 16 6 C 0.51 11.88 5.91 87.66 0.52 12.40 16 7 O -0.53 -16.80 12.18 -3.09 -0.04 -16.84 16 8 C 0.14 2.02 3.09 44.36 0.14 2.16 16 9 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 10 C -0.13 -1.22 5.29 30.68 0.16 -1.06 16 11 C -0.11 -0.59 6.03 30.73 0.19 -0.40 16 12 C -0.13 -1.50 6.03 29.71 0.18 -1.32 16 13 C 0.51 10.96 7.47 87.71 0.66 11.61 16 14 O -0.60 -18.25 16.26 -3.03 -0.05 -18.29 16 15 N -0.59 -11.76 2.94 -831.49 -2.45 -14.20 16 16 C 0.08 1.89 8.68 127.77 1.11 3.00 16 17 N -0.35 -15.60 12.59 -54.45 -0.69 -16.28 16 18 N -0.34 -15.98 3.59 -338.44 -1.22 -17.20 16 19 C 0.28 14.23 5.99 85.63 0.51 14.74 16 20 C -0.55 -30.34 9.39 25.60 0.24 -30.10 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 22 C 0.02 1.24 5.46 84.65 0.46 1.70 16 23 N -0.92 -51.14 13.29 21.45 0.28 -50.86 16 24 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.31 7.07 -2.39 -0.02 2.30 16 31 H 0.16 6.17 5.91 -2.91 -0.02 6.15 16 32 H 0.43 7.65 8.82 -92.71 -0.82 6.83 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.09 0.27 8.13 -2.38 -0.02 0.25 16 36 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.69 7.31 -2.39 -0.02 1.68 16 40 H 0.08 1.54 7.52 -2.39 -0.02 1.53 16 41 H 0.05 1.28 7.44 -2.39 -0.02 1.26 16 42 H 0.05 2.58 7.04 -2.39 -0.02 2.56 16 43 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -76.94 363.76 2.87 -74.07 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.21 Total: 18.19 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.46 Total: 14.48 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -5.74 Total: -115.73 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.09 Total: -35.13 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -76.94 2.87 -74.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907192110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.436 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds