Wall clock time and date at job start Tue Mar 31 2020 12:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99983 * 179.97438 * 12 11 10 14 14 O 1.20822 * 120.00142 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00053 * 180.02562 * 13 12 11 16 16 C 1.50702 * 110.02014 * 59.30082 * 15 13 12 17 17 C 1.38223 * 120.00974 * 0.69999 * 16 15 13 18 18 C 1.38218 * 120.02605 * 179.97438 * 17 16 15 19 19 C 1.38275 * 120.05062 * 359.97438 * 18 17 16 20 20 C 1.38180 * 120.02237 * 0.04184 * 19 18 17 21 21 C 1.38433 * 120.01267 * 180.42704 * 16 15 13 22 22 F 1.35094 * 120.02953 * 359.97438 * 21 16 15 23 23 C 1.53883 * 110.03317 * 297.90995 * 15 13 12 24 24 C 1.54370 * 106.54399 * 240.73159 * 23 15 13 25 25 C 1.54883 * 104.22069 * 23.57003 * 24 23 15 26 26 C 1.54266 * 110.03295 * 180.69504 * 15 13 12 27 27 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 1.08000 * 119.98918 * 359.95574 * 17 16 15 35 35 H 1.07997 * 119.98037 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.98858 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.00522 * 179.97438 * 20 19 18 38 38 H 1.09000 * 110.02751 * 0.02562 * 23 15 13 39 39 H 1.08992 * 110.03372 * 121.43041 * 23 15 13 40 40 H 1.08997 * 110.46205 * 264.89252 * 24 23 15 41 41 H 1.09004 * 110.49283 * 142.26328 * 24 23 15 42 42 H 1.08995 * 110.76115 * 203.76098 * 25 24 23 43 43 H 1.09006 * 110.75668 * 80.38433 * 25 24 23 44 44 H 1.09006 * 110.48542 * 214.35026 * 26 15 13 45 45 H 1.09001 * 110.48655 * 336.85653 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0907 -0.0018 13 6 1.9105 -7.3311 -0.0008 14 8 0.7127 -7.4894 0.0001 15 6 2.8285 -8.5263 -0.0008 16 6 3.7168 -8.4945 1.2162 17 6 3.5955 -7.4681 2.1340 18 6 4.4098 -7.4389 3.2505 19 6 5.3461 -8.4364 3.4509 20 6 5.4694 -9.4632 2.5345 21 6 4.6507 -9.4962 1.4181 22 9 4.7660 -10.5030 0.5248 23 6 3.6854 -8.5328 -1.2789 24 6 3.3473 -9.8394 -2.0281 25 6 1.9360 -10.2182 -1.5147 26 6 2.0010 -9.8281 -0.0171 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8725 -3.6048 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 0.8543 -5.0449 0.8894 33 1 0.8525 -5.0447 -0.8905 34 1 2.8645 -6.6885 1.9785 35 1 4.3141 -6.6368 3.9674 36 1 5.9815 -8.4128 4.3239 37 1 6.2011 -10.2420 2.6911 38 1 3.4376 -7.6712 -1.8989 39 1 4.7437 -8.5138 -1.0190 40 1 4.0663 -10.6193 -1.7776 41 1 3.3284 -9.6682 -3.1045 42 1 1.7577 -11.2874 -1.6280 43 1 1.1691 -9.6407 -2.0311 44 1 2.5027 -10.6063 0.5582 45 1 1.0004 -9.6492 0.3765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912956589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:40 Heat of formation + Delta-G solvation = -130.241846 kcal Electronic energy + Delta-G solvation = -27290.301257 eV Core-core repulsion = 23379.243381 eV Total energy + Delta-G solvation = -3911.057876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15019 -41.15265 -39.09821 -37.78738 -36.29256 -34.03657 -32.44974 -31.64959 -30.72740 -28.97867 -28.40311 -27.02486 -24.14078 -22.98047 -22.85956 -21.88840 -20.84813 -20.41796 -19.47649 -18.16701 -17.44073 -16.89591 -16.50307 -16.24283 -15.93022 -15.88825 -15.75339 -15.12442 -14.70203 -14.49002 -14.16095 -13.91936 -13.42398 -13.36832 -13.20263 -12.80354 -12.54459 -12.25113 -12.18786 -11.96615 -11.68097 -11.64322 -11.54901 -11.34084 -11.26000 -11.02618 -10.94459 -10.75594 -10.66512 -10.63679 -10.40178 -10.23620 -9.75599 -9.51614 -9.18819 -9.18399 -8.86027 -8.40690 -6.05473 -4.08593 0.88960 0.98287 2.23190 2.74982 3.29632 3.33285 3.35944 3.39279 4.01397 4.08271 4.25163 4.37014 4.42261 4.55579 4.74830 4.81638 4.96707 5.07038 5.12471 5.20947 5.23765 5.30573 5.33318 5.47303 5.51735 5.56003 5.58253 5.69344 5.73205 5.81309 5.83698 5.85988 5.93586 5.97383 6.04911 6.09028 6.17323 6.21939 6.45401 6.50217 6.64426 6.79635 6.95055 7.57751 7.68415 7.86170 7.92773 8.33688 8.97648 9.55864 11.05949 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002991 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.840742 B = 9358.258370 C =10356.306098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.064 3.936 12 O -0.352 6.352 13 C 0.472 3.528 14 O -0.501 6.501 15 C -0.011 4.011 16 C -0.105 4.105 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.092 4.092 20 C -0.155 4.155 21 C 0.108 3.892 22 F -0.133 7.133 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.110 4.110 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 -23.272 2.955 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.008 4.008 12 O -0.269 6.269 13 C 0.314 3.686 14 O -0.389 6.389 15 C -0.012 4.012 16 C -0.106 4.106 17 C -0.100 4.100 18 C -0.140 4.140 19 C -0.110 4.110 20 C -0.174 4.174 21 C 0.089 3.911 22 F -0.112 7.112 23 C -0.146 4.146 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.495 -23.184 2.920 25.223 hybrid contribution 0.284 0.974 -0.108 1.021 sum 9.779 -22.210 2.811 24.430 Atomic orbital electron populations 1.69967 1.06088 1.26775 1.50504 1.25029 0.94875 0.99362 0.95177 0.86552 0.79816 0.83234 0.78162 1.20601 1.21182 1.19793 1.21164 0.93112 0.90663 1.51050 0.92435 1.19051 0.93824 0.90752 0.97670 1.21760 0.99892 0.90900 1.02003 1.23556 0.91319 0.83721 1.02244 1.86569 1.42508 1.14940 1.82871 1.23097 0.88184 0.84877 0.72433 1.90643 1.16615 1.86653 1.44952 1.20098 0.93663 0.92478 0.95002 1.19528 0.97841 0.96129 0.97112 1.21304 0.99119 0.96691 0.92868 1.21265 0.95777 0.99154 0.97811 1.21064 0.97901 0.93391 0.98662 1.21110 1.00806 1.01143 0.94347 1.17331 0.97841 0.86711 0.89250 1.91477 1.95138 1.58061 1.66478 1.22270 0.99496 0.99422 0.93394 1.22428 0.97172 0.96796 0.99699 1.22490 0.97246 1.01348 0.94925 1.22528 1.00673 0.93340 0.98200 0.92880 0.96263 0.96241 0.92140 0.92114 0.91481 0.91438 0.84453 0.84872 0.84916 0.84651 0.90366 0.90296 0.90774 0.91160 0.90907 0.91038 0.90165 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 11 C 0.06 1.17 5.47 37.16 0.20 1.37 16 12 O -0.35 -5.78 8.29 -39.26 -0.33 -6.11 16 13 C 0.47 7.32 5.19 36.00 0.19 7.50 16 14 O -0.50 -8.89 15.13 -18.75 -0.28 -9.18 16 15 C -0.01 -0.14 0.63 -155.69 -0.10 -0.24 16 16 C -0.11 -1.26 4.67 -104.55 -0.49 -1.75 16 17 C -0.08 -1.00 8.85 -39.59 -0.35 -1.35 16 18 C -0.12 -1.22 10.04 -39.57 -0.40 -1.62 16 19 C -0.09 -0.78 10.04 -39.59 -0.40 -1.17 16 20 C -0.16 -1.38 10.03 -39.51 -0.40 -1.78 16 21 C 0.11 1.15 6.21 -39.42 -0.24 0.90 16 22 F -0.13 -1.39 13.27 2.25 0.03 -1.36 16 23 C -0.11 -1.22 5.36 -25.55 -0.14 -1.36 16 24 C -0.12 -1.17 6.46 -25.02 -0.16 -1.33 16 25 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 26 C -0.11 -1.25 5.33 -25.07 -0.13 -1.38 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.14 1.87 5.51 -52.49 -0.29 1.58 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.08 0.94 7.64 -51.93 -0.40 0.54 16 39 H 0.08 0.86 7.05 -51.93 -0.37 0.49 16 40 H 0.07 0.65 7.23 -51.93 -0.38 0.28 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.84 6.33 -51.93 -0.33 0.51 16 45 H 0.09 1.12 6.84 -51.93 -0.35 0.77 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -30.80 365.19 -9.37 -40.17 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.73 Total: -0.68 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.28 Total: -18.82 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.61 Total: -15.28 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.03 Total: -1.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.80 -9.37 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.072 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds