Wall clock time and date at job start Tue Mar 31 2020 12:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99605 * 3 2 1 5 5 H 1.48496 * 109.47420 * 30.00261 * 3 2 1 6 6 H 1.48504 * 109.47152 * 150.00286 * 3 2 1 7 7 C 1.37879 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00256 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47095 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.34227 * 116.99900 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00273 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00067 * 180.02562 * 13 12 11 16 16 C 1.50702 * 110.01977 * 59.29906 * 15 13 12 17 17 C 1.38262 * 119.98970 * 186.02996 * 16 15 13 18 18 C 1.38220 * 120.05347 * 179.77019 * 17 16 15 19 19 C 1.38224 * 120.02383 * 0.49859 * 18 17 16 20 20 C 1.38434 * 119.97188 * 359.75300 * 19 18 17 21 21 F 1.35102 * 120.02461 * 179.97438 * 20 19 18 22 22 C 1.38176 * 119.98253 * 6.29900 * 16 15 13 23 23 C 1.53884 * 110.03015 * 297.90952 * 15 13 12 24 24 C 1.54374 * 106.54128 * 240.72774 * 23 15 13 25 25 C 1.54890 * 104.22033 * 23.57370 * 24 23 15 26 26 C 1.54266 * 110.03597 * 180.69402 * 15 13 12 27 27 H 0.97004 * 119.99818 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47038 * 59.99309 * 9 7 2 29 29 H 1.09009 * 109.46434 * 299.99326 * 9 7 2 30 30 H 1.09004 * 109.47334 * 59.99362 * 10 9 7 31 31 H 1.09009 * 109.47120 * 299.99501 * 10 9 7 32 32 H 1.08997 * 109.47356 * 299.99708 * 11 10 9 33 33 H 1.09004 * 109.47198 * 59.99669 * 11 10 9 34 34 H 1.08001 * 119.97484 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.99366 * 180.25031 * 18 17 16 36 36 H 1.07995 * 120.01268 * 179.76891 * 19 18 17 37 37 H 1.08005 * 120.01596 * 359.96179 * 22 16 15 38 38 H 1.08996 * 110.03229 * 359.97438 * 23 15 13 39 39 H 1.09003 * 110.03296 * 121.43380 * 23 15 13 40 40 H 1.09003 * 110.46408 * 264.89406 * 24 23 15 41 41 H 1.08999 * 110.60040 * 142.32295 * 24 23 15 42 42 H 1.08993 * 110.75565 * 203.75558 * 25 24 23 43 43 H 1.09000 * 110.90851 * 80.46096 * 25 24 23 44 44 H 1.08996 * 110.48732 * 214.35165 * 26 15 13 45 45 H 1.09005 * 110.48525 * 336.85871 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 8 2.4237 -6.0908 0.0031 13 6 1.9106 -7.3311 0.0042 14 8 0.7128 -7.4895 0.0042 15 6 2.8285 -8.5263 0.0055 16 6 3.7160 -8.4939 1.2231 17 6 4.7253 -9.4277 1.3677 18 6 5.5430 -9.3964 2.4816 19 6 5.3460 -8.4374 3.4574 20 6 4.3325 -7.5051 3.3162 21 9 4.1386 -6.5677 4.2695 22 6 3.5171 -7.5343 2.1972 23 6 3.6864 -8.5333 -1.2720 24 6 3.3489 -9.8404 -2.0209 25 6 1.9372 -10.2189 -1.5083 26 6 2.0012 -9.8282 -0.0109 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8905 30 1 2.8712 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8878 32 1 0.8531 -5.0443 0.8922 33 1 0.8538 -5.0455 -0.8877 34 1 4.8775 -10.1798 0.6076 35 1 6.3337 -10.1238 2.5916 36 1 5.9827 -8.4154 4.3294 37 1 2.7262 -6.8072 2.0859 38 1 3.4385 -7.6726 -1.8930 39 1 4.7447 -8.5142 -1.0112 40 1 4.0678 -10.6202 -1.7694 41 1 3.3313 -9.6719 -3.0976 42 1 1.7591 -11.2882 -1.6213 43 1 1.1686 -9.6440 -2.0250 44 1 2.5024 -10.6060 0.5652 45 1 1.0002 -9.6490 0.3819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:15 Heat of formation + Delta-G solvation = -134.157596 kcal Electronic energy + Delta-G solvation = -27031.024968 eV Core-core repulsion = 23119.797292 eV Total energy + Delta-G solvation = -3911.227676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.96238 -41.29914 -39.24321 -37.67829 -36.28617 -34.01470 -32.43885 -31.63137 -30.74466 -29.03909 -28.55635 -27.01149 -24.10089 -22.98021 -22.92506 -21.83049 -20.94864 -20.39507 -19.47129 -18.23901 -17.13382 -16.88511 -16.48607 -16.22253 -16.00763 -15.81198 -15.68103 -15.48421 -14.74710 -14.47140 -14.12685 -13.88282 -13.60514 -13.45697 -13.14441 -12.82235 -12.48453 -12.21189 -12.15692 -11.94159 -11.80746 -11.67020 -11.58803 -11.42516 -11.31013 -11.07204 -10.95370 -10.88708 -10.64948 -10.62553 -10.39875 -10.24900 -9.73533 -9.49751 -9.19501 -9.16283 -8.86866 -8.38525 -6.03286 -4.06258 0.88080 0.97464 2.22816 2.75781 3.28809 3.31392 3.37532 3.41396 3.93601 4.10467 4.27251 4.33723 4.44031 4.59355 4.70218 4.80776 4.84117 4.98708 5.09420 5.13528 5.15508 5.24390 5.32742 5.35480 5.47693 5.54911 5.58998 5.62927 5.63711 5.74546 5.79421 5.85592 5.92325 5.96593 5.98883 6.01504 6.07015 6.16859 6.47360 6.52716 6.64423 6.81536 6.97533 7.59971 7.70788 7.86178 7.94943 8.36045 8.99851 9.58044 11.08178 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.003225 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.927899 B = 8681.382700 C =10056.016491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.065 3.935 12 O -0.352 6.352 13 C 0.468 3.532 14 O -0.503 6.503 15 C -0.015 4.015 16 C -0.040 4.040 17 C -0.121 4.121 18 C -0.089 4.089 19 C -0.156 4.156 20 C 0.108 3.892 21 F -0.135 7.135 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.109 4.109 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 -25.425 0.992 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.007 4.007 12 O -0.268 6.268 13 C 0.310 3.690 14 O -0.390 6.390 15 C -0.016 4.016 16 C -0.040 4.040 17 C -0.139 4.139 18 C -0.108 4.108 19 C -0.175 4.175 20 C 0.088 3.912 21 F -0.114 7.114 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.902 -25.252 1.036 27.144 hybrid contribution 0.162 1.390 0.249 1.421 sum 10.064 -23.862 1.285 25.929 Atomic orbital electron populations 1.69967 1.06086 1.26755 1.50555 1.25026 0.94878 0.99358 0.95184 0.86548 0.79843 0.83229 0.78132 1.20608 1.21174 1.19787 1.21168 0.93120 0.90664 1.50992 0.92437 1.19051 0.93821 0.90753 0.97658 1.21764 0.99913 0.90911 1.02001 1.23552 0.91287 0.83728 1.02183 1.86563 1.42511 1.14929 1.82834 1.23172 0.88258 0.85039 0.72489 1.90646 1.16655 1.86690 1.45059 1.20187 0.93763 0.92398 0.95233 1.19254 0.95770 0.95107 0.93898 1.20936 0.95224 0.99080 0.98638 1.20948 0.98974 0.97765 0.93064 1.21184 0.98639 0.96181 1.01477 1.17654 0.97137 0.88958 0.87408 1.91538 1.94546 1.63093 1.62211 1.21253 1.01199 1.00268 0.93421 1.22336 0.99720 0.99407 0.93381 1.22437 0.97027 0.96610 1.00121 1.22529 0.97280 1.01435 0.95050 1.22534 1.00934 0.93170 0.97952 0.92894 0.96248 0.96244 0.92145 0.92119 0.91531 0.91427 0.84962 0.84782 0.84663 0.84576 0.90294 0.89741 0.91125 0.90965 0.90844 0.90936 0.90000 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 11 C 0.07 1.22 5.47 37.16 0.20 1.42 16 12 O -0.35 -5.91 8.64 -39.25 -0.34 -6.25 16 13 C 0.47 7.16 5.01 36.00 0.18 7.34 16 14 O -0.50 -8.85 15.13 -18.75 -0.28 -9.13 16 15 C -0.01 -0.16 0.71 -155.69 -0.11 -0.28 16 16 C -0.04 -0.44 4.66 -104.63 -0.49 -0.93 16 17 C -0.12 -1.00 8.05 -39.58 -0.32 -1.32 16 18 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 19 C -0.16 -1.49 10.03 -39.51 -0.40 -1.88 16 20 C 0.11 1.35 7.30 -39.42 -0.29 1.07 16 21 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 22 C -0.14 -1.89 8.81 -39.51 -0.35 -2.24 16 23 C -0.11 -1.04 5.71 -25.55 -0.15 -1.19 16 24 C -0.12 -0.90 6.83 -25.01 -0.17 -1.07 16 25 C -0.13 -1.03 6.91 -24.74 -0.17 -1.20 16 26 C -0.11 -1.04 5.64 -25.07 -0.14 -1.18 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.13 0.77 7.84 -52.49 -0.41 0.36 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.14 2.07 5.81 -52.48 -0.30 1.77 16 38 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 39 H 0.08 0.70 7.02 -51.93 -0.36 0.34 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.63 7.33 -51.93 -0.38 0.25 16 45 H 0.09 1.03 6.84 -51.93 -0.35 0.68 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -31.98 371.49 -9.39 -41.37 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.83 Total: -2.06 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.29 Total: -18.10 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.62 Total: -15.38 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.98 -9.39 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.785 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds