Wall clock time and date at job start Tue Mar 31 2020 12:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99605 * 3 2 1 5 5 H 1.48496 * 109.47420 * 30.00261 * 3 2 1 6 6 H 1.48504 * 109.47152 * 150.00286 * 3 2 1 7 7 C 1.37879 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00256 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47095 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.34227 * 116.99900 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00273 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00067 * 180.02562 * 13 12 11 16 16 C 1.50702 * 110.01977 * 59.29906 * 15 13 12 17 17 C 1.38262 * 119.98970 * 186.02996 * 16 15 13 18 18 C 1.38220 * 120.05347 * 179.77019 * 17 16 15 19 19 C 1.38224 * 120.02383 * 0.49859 * 18 17 16 20 20 C 1.38434 * 119.97188 * 359.75300 * 19 18 17 21 21 F 1.35102 * 120.02461 * 179.97438 * 20 19 18 22 22 C 1.38176 * 119.98253 * 6.29900 * 16 15 13 23 23 C 1.53884 * 110.03015 * 297.90952 * 15 13 12 24 24 C 1.54374 * 106.54128 * 240.72774 * 23 15 13 25 25 C 1.54890 * 104.22033 * 23.57370 * 24 23 15 26 26 C 1.54266 * 110.03597 * 180.69402 * 15 13 12 27 27 H 0.97004 * 119.99818 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47038 * 59.99309 * 9 7 2 29 29 H 1.09009 * 109.46434 * 299.99326 * 9 7 2 30 30 H 1.09004 * 109.47334 * 59.99362 * 10 9 7 31 31 H 1.09009 * 109.47120 * 299.99501 * 10 9 7 32 32 H 1.08997 * 109.47356 * 299.99708 * 11 10 9 33 33 H 1.09004 * 109.47198 * 59.99669 * 11 10 9 34 34 H 1.08001 * 119.97484 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.99366 * 180.25031 * 18 17 16 36 36 H 1.07995 * 120.01268 * 179.76891 * 19 18 17 37 37 H 1.08005 * 120.01596 * 359.96179 * 22 16 15 38 38 H 1.08996 * 110.03229 * 359.97438 * 23 15 13 39 39 H 1.09003 * 110.03296 * 121.43380 * 23 15 13 40 40 H 1.09003 * 110.46408 * 264.89406 * 24 23 15 41 41 H 1.08999 * 110.60040 * 142.32295 * 24 23 15 42 42 H 1.08993 * 110.75565 * 203.75558 * 25 24 23 43 43 H 1.09000 * 110.90851 * 80.46096 * 25 24 23 44 44 H 1.08996 * 110.48732 * 214.35165 * 26 15 13 45 45 H 1.09005 * 110.48525 * 336.85871 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 8 2.4237 -6.0908 0.0031 13 6 1.9106 -7.3311 0.0042 14 8 0.7128 -7.4895 0.0042 15 6 2.8285 -8.5263 0.0055 16 6 3.7160 -8.4939 1.2231 17 6 4.7253 -9.4277 1.3677 18 6 5.5430 -9.3964 2.4816 19 6 5.3460 -8.4374 3.4574 20 6 4.3325 -7.5051 3.3162 21 9 4.1386 -6.5677 4.2695 22 6 3.5171 -7.5343 2.1972 23 6 3.6864 -8.5333 -1.2720 24 6 3.3489 -9.8404 -2.0209 25 6 1.9372 -10.2189 -1.5083 26 6 2.0012 -9.8282 -0.0109 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8905 30 1 2.8712 -3.6040 0.8922 31 1 2.8725 -3.6048 -0.8878 32 1 0.8531 -5.0443 0.8922 33 1 0.8538 -5.0455 -0.8877 34 1 4.8775 -10.1798 0.6076 35 1 6.3337 -10.1238 2.5916 36 1 5.9827 -8.4154 4.3294 37 1 2.7262 -6.8072 2.0859 38 1 3.4385 -7.6726 -1.8930 39 1 4.7447 -8.5142 -1.0112 40 1 4.0678 -10.6202 -1.7694 41 1 3.3313 -9.6719 -3.0976 42 1 1.7591 -11.2882 -1.6213 43 1 1.1686 -9.6440 -2.0250 44 1 2.5024 -10.6060 0.5652 45 1 1.0002 -9.6490 0.3819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:14 Heat of formation + Delta-G solvation = -149.417748 kcal Electronic energy + Delta-G solvation = -27031.686698 eV Core-core repulsion = 23119.797292 eV Total energy + Delta-G solvation = -3911.889405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.95549 -42.38760 -40.25527 -38.60266 -37.57236 -36.01334 -33.81994 -33.05469 -31.52034 -29.79999 -29.55214 -28.73144 -25.64718 -24.28367 -23.68300 -22.91862 -22.25952 -21.58973 -20.54907 -19.28542 -18.67445 -18.17444 -17.81878 -17.53011 -17.02592 -16.81964 -16.66543 -16.52951 -16.23330 -15.73040 -15.49621 -14.89144 -14.57020 -14.37289 -14.26284 -14.12033 -13.92333 -13.81317 -13.57246 -13.14333 -12.86617 -12.63034 -12.59996 -12.55953 -12.43257 -12.35237 -12.16524 -12.07528 -12.00996 -11.82079 -11.74987 -11.50767 -11.48581 -11.36134 -11.19856 -10.61475 -9.98655 -9.65634 -8.25638 -6.37775 0.11523 0.18438 0.98900 1.38151 1.40428 1.49179 1.53184 2.38267 2.53834 3.08024 3.09399 3.24385 3.46852 3.55083 3.73758 3.82700 3.88821 3.94818 4.07121 4.16119 4.25894 4.30004 4.36402 4.43134 4.44885 4.50644 4.69589 4.71799 4.72986 4.82833 4.92620 4.98991 5.04612 5.06314 5.08703 5.15577 5.21194 5.28140 5.32244 5.34170 5.41654 5.44007 5.47543 5.55945 5.74425 5.89454 6.13956 6.55362 6.77321 7.31867 8.86733 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.003225 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.927899 B = 8681.382700 C =10056.016491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.091 4.091 11 C 0.076 3.924 12 O -0.353 6.353 13 C 0.463 3.537 14 O -0.534 6.534 15 C -0.011 4.011 16 C -0.049 4.049 17 C -0.106 4.106 18 C -0.074 4.074 19 C -0.152 4.152 20 C 0.075 3.925 21 F -0.157 7.157 22 C -0.174 4.174 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.125 4.125 26 C -0.107 4.107 27 H 0.265 0.735 28 H -0.001 1.001 29 H -0.006 1.006 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.983 -28.121 0.366 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.010 4.010 10 C -0.129 4.129 11 C 0.002 3.998 12 O -0.269 6.269 13 C 0.308 3.692 14 O -0.423 6.423 15 C -0.012 4.012 16 C -0.049 4.049 17 C -0.123 4.123 18 C -0.091 4.091 19 C -0.170 4.170 20 C 0.056 3.944 21 F -0.135 7.135 22 C -0.193 4.193 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.162 4.162 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.189 0.811 35 H 0.197 0.803 36 H 0.174 0.826 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.458 -27.966 0.405 31.039 hybrid contribution -0.975 2.148 0.465 2.405 sum 12.484 -25.818 0.870 28.691 Atomic orbital electron populations 1.70103 1.07905 1.28018 1.51277 1.26026 0.95819 1.03575 0.94434 0.85368 0.78588 0.77961 0.78673 1.19444 1.20650 1.18666 1.21595 0.93686 0.91837 1.51179 0.91789 1.18922 0.94181 0.92477 0.95395 1.21439 0.98710 0.90427 1.02323 1.23135 0.91062 0.83972 1.01583 1.86556 1.41796 1.15384 1.83159 1.24248 0.88809 0.85259 0.70931 1.90626 1.18282 1.86900 1.46507 1.20399 0.93540 0.90548 0.96697 1.19326 0.96882 0.95657 0.93046 1.21354 0.93225 0.98237 0.99501 1.21480 0.99035 0.97134 0.91468 1.21528 0.97396 0.95329 1.02773 1.18027 0.98923 0.90158 0.87315 1.91474 1.94901 1.64202 1.62970 1.21151 1.01519 1.01256 0.95341 1.22422 1.00236 1.00142 0.92137 1.22456 0.96717 0.95952 1.00069 1.22542 0.97548 1.02578 0.93573 1.22598 0.99464 0.92906 0.99453 0.92592 0.98310 0.98760 0.92113 0.91265 0.92524 0.91710 0.81068 0.80327 0.82619 0.88195 0.92448 0.87837 0.87733 0.90415 0.88286 0.93514 0.87019 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.09 -4.05 5.53 30.59 0.17 -3.88 16 11 C 0.08 3.06 5.47 71.98 0.39 3.45 16 12 O -0.35 -12.62 8.64 -51.39 -0.44 -13.06 16 13 C 0.46 15.01 5.01 71.23 0.36 15.36 16 14 O -0.53 -20.24 15.13 21.96 0.33 -19.91 16 15 C -0.01 -0.23 0.71 -52.95 -0.04 -0.27 16 16 C -0.05 -1.01 4.66 -19.87 -0.09 -1.10 16 17 C -0.11 -1.27 8.05 22.27 0.18 -1.09 16 18 C -0.07 -0.77 10.04 22.26 0.22 -0.55 16 19 C -0.15 -2.52 10.03 22.31 0.22 -2.30 16 20 C 0.07 1.92 7.30 22.38 0.16 2.08 16 21 F -0.16 -4.78 17.27 44.97 0.78 -4.00 16 22 C -0.17 -4.82 8.81 22.31 0.20 -4.62 16 23 C -0.11 -1.86 5.71 31.36 0.18 -1.68 16 24 C -0.11 -1.22 6.83 31.71 0.22 -1.01 16 25 C -0.13 -1.77 6.91 31.88 0.22 -1.55 16 26 C -0.11 -1.89 5.64 31.67 0.18 -1.72 16 27 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 33 H 0.06 2.61 8.13 -2.38 -0.02 2.59 16 34 H 0.17 0.77 7.84 -2.91 -0.02 0.74 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.10 3.41 5.81 -2.91 -0.02 3.39 16 38 H 0.06 1.21 7.64 -2.39 -0.02 1.19 16 39 H 0.10 1.33 7.02 -2.39 -0.02 1.31 16 40 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 1.30 7.33 -2.39 -0.02 1.28 16 45 H 0.06 1.46 6.84 -2.38 -0.02 1.45 16 Total: -1.00 -74.83 371.49 7.37 -67.47 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.98 Total: 8.59 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.41 Total: -28.42 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.28 Total: -57.67 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.11 Total: -32.98 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.83 7.37 -67.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.952 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds