Wall clock time and date at job start Tue Mar 31 2020 13:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35244 * 126.07280 * 2 1 4 4 C 1.40396 * 107.86713 * 179.90694 * 3 2 1 5 5 N 1.40203 * 125.97315 * 180.14467 * 4 3 2 6 6 C 1.34773 * 119.99750 * 0.23721 * 5 4 3 7 7 O 1.21600 * 119.99985 * 354.82258 * 6 5 4 8 8 N 1.34777 * 120.00196 * 174.81937 * 6 5 4 9 9 C 1.46872 * 120.70869 * 5.37330 * 8 6 5 10 10 C 1.52620 * 109.53318 * 237.04561 * 9 8 6 11 11 C 1.53231 * 109.50534 * 301.86003 * 10 9 8 12 12 C 1.51325 * 108.65017 * 56.04718 * 11 10 9 13 13 O 1.20754 * 121.01904 * 127.38017 * 12 11 10 14 14 C 1.47202 * 120.71801 * 185.64382 * 8 6 5 15 15 H 1.08993 * 109.82747 * 251.03932 * 14 8 6 16 16 C 1.52997 * 109.82343 * 11.98036 * 14 8 6 17 17 N 1.31213 * 108.05933 * 0.37060 * 4 3 2 18 18 N 1.34968 * 126.06750 * 180.31964 * 2 1 3 19 19 C 1.46496 * 125.97781 * 359.94192 * 18 2 1 20 20 C 1.50695 * 109.47514 * 90.00062 * 19 18 2 21 21 H 1.08004 * 120.00046 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00119 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99939 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47436 * 89.99748 * 24 22 20 26 26 H 1.48500 * 109.47205 * 209.99707 * 24 22 20 27 27 H 1.48501 * 109.47348 * 329.99424 * 24 22 20 28 28 H 1.09001 * 109.46517 * 269.68276 * 1 2 3 29 29 H 1.09002 * 109.46925 * 149.68344 * 1 2 3 30 30 H 1.08997 * 109.46999 * 29.67847 * 1 2 3 31 31 H 1.08000 * 126.06518 * 0.02562 * 3 2 1 32 32 H 0.96993 * 119.99814 * 180.23491 * 5 4 3 33 33 H 1.09001 * 109.50989 * 357.02599 * 9 8 6 34 34 H 1.09008 * 109.50763 * 117.15126 * 9 8 6 35 35 H 1.09007 * 109.54660 * 181.78308 * 10 9 8 36 36 H 1.08999 * 109.33722 * 61.81395 * 10 9 8 37 37 H 1.08993 * 109.60384 * 296.29566 * 11 10 9 38 38 H 1.08996 * 109.60388 * 175.79538 * 11 10 9 39 39 H 1.09000 * 109.47600 * 50.70483 * 16 14 8 40 40 H 1.09004 * 109.46863 * 170.70629 * 16 14 8 41 41 H 1.09005 * 109.46970 * 290.70299 * 16 14 8 42 42 H 1.09005 * 109.47165 * 209.99860 * 19 18 2 43 43 H 1.08999 * 109.46835 * 329.99626 * 19 18 2 44 44 H 0.96995 * 119.99953 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7739 1.4751 0.0057 6 6 4.6371 2.8158 0.0122 7 8 3.5320 3.3147 -0.0801 8 7 5.7252 3.6037 0.1210 9 6 7.0746 3.0239 0.1155 10 6 7.8095 3.4295 1.3901 11 6 7.8707 4.9579 1.4811 12 6 6.4611 5.5037 1.4098 13 8 6.0461 6.2667 2.2488 14 6 5.5865 5.0631 0.2540 15 1 5.9139 5.5507 -0.6642 16 6 4.1271 5.4216 0.5414 17 7 3.6337 -0.6576 -0.0046 18 7 2.3016 -1.0910 -0.0061 19 6 1.8501 -2.4846 -0.0127 20 6 1.6940 -2.9554 -1.4356 21 1 1.9093 -2.2836 -2.2534 22 6 1.2754 -4.2436 -1.6936 23 7 1.0128 -5.0615 -0.6978 24 14 1.0814 -4.8270 -3.4575 25 1 2.3616 -5.4135 -3.9286 26 1 0.0118 -5.8550 -3.5240 27 1 0.7162 -3.6762 -4.3222 28 1 -0.3632 -0.0057 1.0277 29 1 -0.3633 -0.8872 -0.5188 30 1 -0.3633 0.8928 -0.5088 31 1 1.9721 2.1211 0.0004 32 1 5.6587 1.0778 0.0036 33 1 7.0038 1.9372 0.0685 34 1 7.6250 3.3911 -0.7509 35 1 8.8219 3.0257 1.3716 36 1 7.2766 3.0348 2.2551 37 1 8.4574 5.3505 0.6508 38 1 8.3286 5.2499 2.4261 39 1 3.7615 4.8179 1.3721 40 1 4.0569 6.4779 0.8013 41 1 3.5233 5.2244 -0.3444 42 1 2.5852 -3.1071 0.4975 43 1 0.8919 -2.5584 0.5017 44 1 0.7180 -5.9675 -0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:01 Heat of formation + Delta-G solvation = 35.707957 kcal Electronic energy + Delta-G solvation = -27094.525494 eV Core-core repulsion = 23242.876455 eV Total energy + Delta-G solvation = -3851.649040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31707 -40.40548 -39.29374 -36.78123 -35.23707 -33.46141 -33.32309 -31.85204 -31.01693 -30.40957 -27.58511 -26.66197 -26.30173 -24.98529 -23.10074 -22.49957 -21.60028 -19.88169 -19.73161 -18.99486 -17.64833 -16.74273 -16.69605 -16.41243 -16.00543 -15.59560 -15.25086 -15.16457 -14.96792 -14.47015 -14.27920 -14.05012 -13.78303 -13.41693 -13.07287 -12.82278 -12.53491 -12.47587 -12.31179 -12.23890 -12.10707 -11.83233 -11.72424 -11.60510 -11.48898 -11.37354 -11.03586 -10.83587 -10.44020 -10.25639 -10.20613 -9.84457 -9.52646 -9.27589 -8.87437 -8.64908 -7.92171 -7.41550 -6.25855 -4.33578 1.40902 2.24635 2.60097 3.02962 3.21192 3.27106 3.27821 3.34105 3.55003 3.79567 3.99617 4.24988 4.28140 4.30772 4.42491 4.73184 4.80006 4.94850 5.01042 5.07503 5.09368 5.25413 5.40914 5.47569 5.58997 5.63193 5.72096 5.95005 5.96341 5.98445 6.11392 6.17880 6.45338 6.50196 6.53913 6.62960 6.91187 6.98262 7.05300 7.08922 7.50233 7.66974 7.81920 7.89061 8.06834 8.49991 8.66469 8.75569 9.32856 10.81317 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.002729 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.703166 B =10256.266319 C =10746.504445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.288 4.288 4 C 0.280 3.720 5 N -0.643 5.643 6 C 0.719 3.281 7 O -0.551 6.551 8 N -0.624 5.624 9 C 0.103 3.897 10 C -0.131 4.131 11 C -0.169 4.169 12 C 0.351 3.649 13 O -0.438 6.438 14 C 0.121 3.879 15 H 0.103 0.897 16 C -0.136 4.136 17 N -0.324 5.324 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.404 0.596 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.654 18.187 2.404 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.319 4.319 4 C 0.027 3.973 5 N -0.295 5.295 6 C 0.420 3.580 7 O -0.425 6.425 8 N -0.365 5.365 9 C -0.021 4.021 10 C -0.169 4.169 11 C -0.207 4.207 12 C 0.224 3.776 13 O -0.308 6.308 14 C 0.016 3.984 15 H 0.120 0.880 16 C -0.193 4.193 17 N -0.154 5.154 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.224 17.606 2.858 21.623 hybrid contribution 0.273 -0.165 -0.994 1.044 sum 12.497 17.441 1.864 21.537 Atomic orbital electron populations 1.20376 0.87966 1.03854 1.02496 1.21059 0.94893 0.87132 1.00864 1.21228 0.89653 0.99826 1.21236 1.18665 0.86526 0.89280 1.02827 1.41679 1.07640 1.03693 1.76511 1.15490 0.84076 0.80400 0.78011 1.90916 1.23917 1.72127 1.55570 1.47225 1.05060 1.05572 1.78646 1.21665 0.82746 0.99185 0.98467 1.21846 1.02208 0.94053 0.98837 1.22327 0.95944 0.97202 1.05255 1.25324 0.90128 0.77746 0.84451 1.90424 1.75471 1.27933 1.37003 1.21789 0.98921 0.79745 0.97900 0.87989 1.22080 0.91881 1.00312 1.05066 1.77240 1.00035 1.08280 1.29877 1.48967 1.00854 1.07749 1.52459 1.19673 0.95948 0.71372 0.98880 1.21334 1.46744 0.97964 0.91406 0.91733 1.24929 0.94688 0.96062 0.98116 1.69917 1.44942 1.06983 1.31140 0.86359 0.77999 0.78571 0.83782 1.20363 1.20887 1.19635 0.91126 0.89940 0.90615 0.82231 0.75883 0.89407 0.90089 0.88921 0.90668 0.87976 0.88949 0.91312 0.92668 0.88890 0.93057 0.92813 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.93 6.93 -82.28 -0.57 1.36 16 3 C -0.29 -5.88 9.52 -39.84 -0.38 -6.26 16 4 C 0.28 5.62 8.11 -154.35 -1.25 4.37 16 5 N -0.64 -9.79 5.37 -15.50 -0.08 -9.87 16 6 C 0.72 10.29 8.01 -86.92 -0.70 9.60 16 7 O -0.55 -9.34 9.33 5.28 0.05 -9.29 16 8 N -0.62 -6.26 2.98 -172.07 -0.51 -6.77 16 9 C 0.10 0.63 6.30 -4.03 -0.03 0.61 16 10 C -0.13 -0.67 6.07 -26.81 -0.16 -0.83 16 11 C -0.17 -0.94 6.14 -27.46 -0.17 -1.11 16 12 C 0.35 3.22 6.69 -28.34 -0.19 3.03 16 13 O -0.44 -5.52 16.77 6.00 0.10 -5.42 16 14 C 0.12 1.14 3.75 -68.31 -0.26 0.88 16 15 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 16 C -0.14 -1.62 7.25 37.16 0.27 -1.35 16 17 N -0.32 -7.37 12.59 31.44 0.40 -6.98 16 18 N -0.32 -7.49 3.59 -58.33 -0.21 -7.70 16 19 C 0.26 6.60 5.81 -5.20 -0.03 6.57 16 20 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 21 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 24 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.16 3.17 5.93 -52.49 -0.31 2.86 16 32 H 0.40 4.93 6.28 -40.82 -0.26 4.67 16 33 H 0.09 0.52 5.55 -51.93 -0.29 0.23 16 34 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.99 7.10 -51.93 -0.37 0.62 16 40 H 0.05 0.61 7.74 -51.93 -0.40 0.20 16 41 H 0.09 1.22 6.52 -51.93 -0.34 0.88 16 42 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -33.47 357.96 -8.79 -42.26 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.11 Total: 4.24 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.52 Total: 2.39 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.33 Total: -55.53 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.15 Total: -14.71 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.47 -8.79 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.970 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds