Wall clock time and date at job start Tue Mar 31 2020 13:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35244 * 126.07280 * 2 1 4 4 C 1.40396 * 107.86713 * 179.90694 * 3 2 1 5 5 N 1.40203 * 125.97315 * 180.14467 * 4 3 2 6 6 C 1.34773 * 119.99750 * 0.23721 * 5 4 3 7 7 O 1.21600 * 119.99985 * 354.82258 * 6 5 4 8 8 N 1.34777 * 120.00196 * 174.81937 * 6 5 4 9 9 C 1.46872 * 120.70869 * 5.37330 * 8 6 5 10 10 C 1.52620 * 109.53318 * 237.04561 * 9 8 6 11 11 C 1.53231 * 109.50534 * 301.86003 * 10 9 8 12 12 C 1.51325 * 108.65017 * 56.04718 * 11 10 9 13 13 O 1.20754 * 121.01904 * 127.38017 * 12 11 10 14 14 C 1.47202 * 120.71801 * 185.64382 * 8 6 5 15 15 H 1.08993 * 109.82747 * 251.03932 * 14 8 6 16 16 C 1.52997 * 109.82343 * 11.98036 * 14 8 6 17 17 N 1.31213 * 108.05933 * 0.37060 * 4 3 2 18 18 N 1.34968 * 126.06750 * 180.31964 * 2 1 3 19 19 C 1.46496 * 125.97781 * 359.94192 * 18 2 1 20 20 C 1.50695 * 109.47514 * 90.00062 * 19 18 2 21 21 H 1.08004 * 120.00046 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00119 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99939 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99878 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47436 * 89.99748 * 24 22 20 26 26 H 1.48500 * 109.47205 * 209.99707 * 24 22 20 27 27 H 1.48501 * 109.47348 * 329.99424 * 24 22 20 28 28 H 1.09001 * 109.46517 * 269.68276 * 1 2 3 29 29 H 1.09002 * 109.46925 * 149.68344 * 1 2 3 30 30 H 1.08997 * 109.46999 * 29.67847 * 1 2 3 31 31 H 1.08000 * 126.06518 * 0.02562 * 3 2 1 32 32 H 0.96993 * 119.99814 * 180.23491 * 5 4 3 33 33 H 1.09001 * 109.50989 * 357.02599 * 9 8 6 34 34 H 1.09008 * 109.50763 * 117.15126 * 9 8 6 35 35 H 1.09007 * 109.54660 * 181.78308 * 10 9 8 36 36 H 1.08999 * 109.33722 * 61.81395 * 10 9 8 37 37 H 1.08993 * 109.60384 * 296.29566 * 11 10 9 38 38 H 1.08996 * 109.60388 * 175.79538 * 11 10 9 39 39 H 1.09000 * 109.47600 * 50.70483 * 16 14 8 40 40 H 1.09004 * 109.46863 * 170.70629 * 16 14 8 41 41 H 1.09005 * 109.46970 * 290.70299 * 16 14 8 42 42 H 1.09005 * 109.47165 * 209.99860 * 19 18 2 43 43 H 1.08999 * 109.46835 * 329.99626 * 19 18 2 44 44 H 0.96995 * 119.99953 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7739 1.4751 0.0057 6 6 4.6371 2.8158 0.0122 7 8 3.5320 3.3147 -0.0801 8 7 5.7252 3.6037 0.1210 9 6 7.0746 3.0239 0.1155 10 6 7.8095 3.4295 1.3901 11 6 7.8707 4.9579 1.4811 12 6 6.4611 5.5037 1.4098 13 8 6.0461 6.2667 2.2488 14 6 5.5865 5.0631 0.2540 15 1 5.9139 5.5507 -0.6642 16 6 4.1271 5.4216 0.5414 17 7 3.6337 -0.6576 -0.0046 18 7 2.3016 -1.0910 -0.0061 19 6 1.8501 -2.4846 -0.0127 20 6 1.6940 -2.9554 -1.4356 21 1 1.9093 -2.2836 -2.2534 22 6 1.2754 -4.2436 -1.6936 23 7 1.0128 -5.0615 -0.6978 24 14 1.0814 -4.8270 -3.4575 25 1 2.3616 -5.4135 -3.9286 26 1 0.0118 -5.8550 -3.5240 27 1 0.7162 -3.6762 -4.3222 28 1 -0.3632 -0.0057 1.0277 29 1 -0.3633 -0.8872 -0.5188 30 1 -0.3633 0.8928 -0.5088 31 1 1.9721 2.1211 0.0004 32 1 5.6587 1.0778 0.0036 33 1 7.0038 1.9372 0.0685 34 1 7.6250 3.3911 -0.7509 35 1 8.8219 3.0257 1.3716 36 1 7.2766 3.0348 2.2551 37 1 8.4574 5.3505 0.6508 38 1 8.3286 5.2499 2.4261 39 1 3.7615 4.8179 1.3721 40 1 4.0569 6.4779 0.8013 41 1 3.5233 5.2244 -0.3444 42 1 2.5852 -3.1071 0.4975 43 1 0.8919 -2.5584 0.5017 44 1 0.7180 -5.9675 -0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930632895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:00 Heat of formation + Delta-G solvation = 14.616060 kcal Electronic energy + Delta-G solvation = -27095.440108 eV Core-core repulsion = 23242.876455 eV Total energy + Delta-G solvation = -3852.563653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48037 -41.73089 -40.31064 -37.62658 -36.57787 -35.37985 -34.04223 -33.30913 -32.62973 -31.62423 -28.58864 -28.19572 -27.83358 -25.95968 -24.85763 -23.18793 -22.83921 -21.20930 -20.98850 -20.03208 -18.82445 -18.66296 -17.85817 -17.35804 -17.26797 -16.76836 -16.36976 -16.27948 -16.12539 -15.74472 -15.60902 -15.30887 -14.77917 -14.59143 -14.30457 -14.04687 -13.79103 -13.76683 -13.62103 -13.43177 -13.29564 -13.14823 -12.98552 -12.77291 -12.67995 -12.58052 -12.26950 -12.22029 -12.07894 -11.99989 -11.50016 -11.31760 -10.98559 -10.73055 -10.43510 -9.73047 -9.52825 -9.05360 -8.31508 -6.49454 0.62783 1.03473 1.16765 1.38961 1.39561 1.51182 1.64916 1.97647 2.35079 2.36109 2.74898 2.91095 2.97922 3.61235 3.76441 3.87171 3.92447 4.03827 4.16456 4.25806 4.34964 4.46251 4.50956 4.66825 4.69896 4.76938 4.77618 4.88506 4.92033 4.95430 4.98773 5.02860 5.05757 5.11881 5.19018 5.21853 5.40455 5.50392 5.54952 5.65761 5.82466 5.98546 6.28282 6.36084 6.57702 6.64899 7.09022 7.21620 7.36902 8.74175 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.002729 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.703166 B =10256.266319 C =10746.504445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.292 3.708 5 N -0.635 5.635 6 C 0.713 3.287 7 O -0.582 6.582 8 N -0.613 5.613 9 C 0.093 3.907 10 C -0.125 4.125 11 C -0.161 4.161 12 C 0.354 3.646 13 O -0.481 6.481 14 C 0.116 3.884 15 H 0.137 0.863 16 C -0.129 4.129 17 N -0.359 5.359 18 N -0.344 5.344 19 C 0.276 3.724 20 C -0.552 4.552 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.166 0.834 32 H 0.418 0.582 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.053 0.947 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.025 0.975 43 H 0.050 0.950 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.615 19.186 1.110 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.290 5.290 6 C 0.414 3.586 7 O -0.459 6.459 8 N -0.353 5.353 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.198 4.198 12 C 0.229 3.771 13 O -0.354 6.354 14 C 0.012 3.988 15 H 0.154 0.846 16 C -0.187 4.187 17 N -0.189 5.189 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.183 0.817 32 H 0.258 0.742 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.156 0.844 38 H 0.113 0.887 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.251 18.630 1.570 23.508 hybrid contribution -0.272 -0.340 -0.543 0.696 sum 13.979 18.290 1.026 23.043 Atomic orbital electron populations 1.20489 0.85542 1.04321 1.03996 1.21718 0.96586 0.86492 0.99540 1.21397 0.89983 0.99842 1.21563 1.18941 0.88042 0.88913 1.00394 1.41679 1.07014 1.03795 1.76500 1.15722 0.84814 0.80137 0.77892 1.90897 1.25647 1.72491 1.56825 1.47265 1.05509 1.05431 1.77086 1.22078 0.80744 0.99412 1.00604 1.21850 1.03578 0.93652 0.97199 1.22366 0.93316 0.97158 1.06969 1.25780 0.91653 0.76579 0.83077 1.90424 1.76618 1.30119 1.38219 1.21973 0.97462 0.79477 0.99875 0.84553 1.21902 0.93744 0.99977 1.03052 1.77158 1.00024 1.09668 1.32074 1.48756 1.01677 1.07434 1.54745 1.19224 0.94844 0.72461 0.97745 1.21446 1.47465 0.98354 0.91789 0.93198 1.25731 0.93957 0.95906 1.02232 1.69999 1.45133 1.07428 1.33127 0.85358 0.78275 0.78180 0.78702 1.19910 1.19610 1.19412 0.89032 0.91434 0.88047 0.81664 0.74193 0.89189 0.86553 0.85490 0.92817 0.84365 0.88686 0.94486 0.92199 0.90294 0.95734 0.93173 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.20 16 2 C 0.09 3.70 6.93 41.39 0.29 3.99 16 3 C -0.30 -12.23 9.52 22.10 0.21 -12.02 16 4 C 0.29 11.83 8.11 133.31 1.08 12.91 16 5 N -0.64 -19.01 5.37 -321.22 -1.72 -20.73 16 6 C 0.71 19.95 8.01 179.06 1.43 21.38 16 7 O -0.58 -19.91 9.33 -4.03 -0.04 -19.95 16 8 N -0.61 -11.09 2.98 -816.57 -2.44 -13.53 16 9 C 0.09 0.82 6.30 86.18 0.54 1.36 16 10 C -0.12 -0.81 6.07 30.55 0.19 -0.63 16 11 C -0.16 -1.17 6.14 30.12 0.19 -0.99 16 12 C 0.35 5.81 6.69 29.55 0.20 6.00 16 13 O -0.48 -11.88 16.77 -1.43 -0.02 -11.90 16 14 C 0.12 1.97 3.75 44.36 0.17 2.13 16 15 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 16 C -0.13 -3.12 7.25 71.98 0.52 -2.59 16 17 N -0.36 -16.72 12.59 -54.43 -0.69 -17.41 16 18 N -0.34 -16.68 3.59 -338.45 -1.22 -17.89 16 19 C 0.28 14.63 5.81 85.63 0.50 15.13 16 20 C -0.55 -30.93 9.39 25.60 0.24 -30.69 16 21 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 22 C 0.02 1.24 5.46 84.66 0.46 1.70 16 23 N -0.92 -51.84 13.29 21.45 0.28 -51.55 16 24 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 30 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.17 6.63 5.93 -2.91 -0.02 6.61 16 32 H 0.42 9.73 6.28 -92.71 -0.58 9.15 16 33 H 0.09 0.79 5.55 -2.39 -0.01 0.78 16 34 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.13 0.08 8.14 -2.38 -0.02 0.06 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.04 1.10 7.10 -2.39 -0.02 1.09 16 40 H 0.06 1.34 7.74 -2.38 -0.02 1.32 16 41 H 0.08 2.11 6.52 -2.38 -0.02 2.09 16 42 H 0.02 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.05 2.64 7.65 -2.39 -0.02 2.62 16 44 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -76.03 357.96 3.36 -72.67 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.45 Total: 19.90 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.72 Total: 15.48 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.78 Total: -121.11 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.06 Total: -31.85 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.03 3.36 -72.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.287 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds