Wall clock time and date at job start Tue Mar 31 2020 13:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30537 * 125.95458 * 2 1 4 4 N 1.39950 * 108.85454 * 180.25900 * 3 2 1 5 5 C 1.46499 * 125.79897 * 179.74730 * 4 3 2 6 6 C 1.34607 * 108.40105 * 359.75734 * 4 3 2 7 7 C 1.37849 * 107.40991 * 359.97438 * 6 4 3 8 8 C 1.47562 * 126.37851 * 179.97438 * 7 6 4 9 9 N 1.29146 * 125.86990 * 180.02562 * 8 7 6 10 10 O 1.41399 * 112.85684 * 179.64416 * 9 8 7 11 11 C 1.44203 * 107.59861 * 17.49599 * 10 9 8 12 12 H 1.09005 * 110.99837 * 92.71678 * 11 10 9 13 13 C 1.50697 * 110.96831 * 216.46559 * 11 10 9 14 14 O 1.21282 * 120.00298 * 4.42777 * 13 11 10 15 15 N 1.34777 * 119.99547 * 184.14627 * 13 11 10 16 16 C 1.46503 * 119.99932 * 175.14147 * 15 13 11 17 17 C 1.46500 * 120.00369 * 355.14652 * 15 13 11 18 18 H 1.09001 * 109.46789 * 0.02562 * 17 15 13 19 19 C 1.52995 * 109.47184 * 239.99709 * 17 15 13 20 20 C 1.50703 * 109.46913 * 119.99662 * 17 15 13 21 21 H 1.07995 * 120.00336 * 5.42069 * 20 17 15 22 22 C 1.37879 * 119.99703 * 185.41898 * 20 17 15 23 23 N 1.31519 * 120.00185 * 9.29432 * 22 20 17 24 24 Si 1.86804 * 120.00187 * 189.29215 * 22 20 17 25 25 H 1.48497 * 109.46703 * 94.99054 * 24 22 20 26 26 H 1.48497 * 109.47323 * 214.99431 * 24 22 20 27 27 H 1.48504 * 109.46799 * 334.99382 * 24 22 20 28 28 C 1.51685 * 125.86816 * 0.02562 * 8 7 6 29 29 H 1.09008 * 109.46942 * 270.14315 * 1 2 3 30 30 H 1.08997 * 109.47006 * 30.14403 * 1 2 3 31 31 H 1.08996 * 109.47243 * 150.14629 * 1 2 3 32 32 H 1.08993 * 109.47651 * 270.00927 * 5 4 3 33 33 H 1.09003 * 109.46833 * 30.00865 * 5 4 3 34 34 H 1.08998 * 109.46942 * 150.00073 * 5 4 3 35 35 H 1.07996 * 126.29083 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.47146 * 94.28449 * 16 15 13 37 37 H 1.09003 * 109.47697 * 214.28850 * 16 15 13 38 38 H 1.09005 * 109.47296 * 334.28933 * 16 15 13 39 39 H 1.08996 * 109.47176 * 183.27465 * 19 17 15 40 40 H 1.08999 * 109.47384 * 303.27102 * 19 17 15 41 41 H 1.08995 * 109.47090 * 63.27340 * 19 17 15 42 42 H 0.97000 * 120.00464 * 179.97438 * 23 22 20 43 43 H 1.08997 * 110.79279 * 46.37523 * 28 8 7 44 44 H 1.09001 * 110.95979 * 282.98702 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0567 0.0000 4 7 3.6111 0.6452 -0.0060 5 6 4.7795 1.5289 -0.0132 6 6 3.6417 -0.7005 -0.0043 7 6 2.3361 -1.1428 0.0033 8 6 1.8883 -2.5488 0.0072 9 7 0.6614 -2.9522 0.0139 10 8 0.5467 -4.3615 0.0079 11 6 1.8208 -4.9044 0.4096 12 1 1.8505 -5.0760 1.4857 13 6 2.1287 -6.1722 -0.3446 14 8 1.3806 -6.5545 -1.2192 15 7 3.2386 -6.8782 -0.0510 16 6 3.4839 -8.1643 -0.7083 17 6 4.1997 -6.3596 0.9256 18 1 3.8499 -5.3996 1.3051 19 6 5.5618 -6.1772 0.2532 20 6 4.3299 -7.3336 2.0682 21 1 3.8227 -8.2861 2.0263 22 6 5.0967 -7.0086 3.1670 23 7 5.5639 -5.7869 3.3049 24 14 5.4722 -8.3035 4.4600 25 1 6.7882 -8.9267 4.1688 26 1 5.5117 -7.6670 5.8011 27 1 4.4149 -9.3461 4.4379 28 6 2.7898 -3.7687 0.0040 29 1 -0.3633 0.0026 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8912 -0.5115 32 1 5.0642 1.7466 -1.0425 33 1 4.5350 2.4586 0.5006 34 1 5.6087 1.0390 0.4973 35 1 4.5265 -1.3198 -0.0081 36 1 4.1147 -8.0104 -1.5838 37 1 3.9851 -8.8380 -0.0132 38 1 2.5343 -8.6015 -1.0171 39 1 6.2909 -5.8469 0.9930 40 1 5.8847 -7.1254 -0.1768 41 1 5.4804 -5.4295 -0.5357 42 1 6.1030 -5.5581 4.0781 43 1 3.5888 -3.6612 0.7374 44 1 3.2004 -3.9474 -0.9898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:08 Heat of formation + Delta-G solvation = 67.891210 kcal Electronic energy + Delta-G solvation = -27504.712891 eV Core-core repulsion = 23654.459422 eV Total energy + Delta-G solvation = -3850.253469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41061 -40.14596 -38.33520 -35.69971 -34.44610 -32.87946 -32.70202 -30.90060 -30.19816 -29.40190 -29.17219 -26.59266 -25.81586 -25.39917 -23.54551 -22.29828 -21.53327 -20.22248 -19.40264 -18.50850 -17.24031 -16.86279 -16.51163 -15.80726 -15.72989 -15.33222 -15.10934 -14.67487 -14.44372 -14.10789 -13.85185 -13.63261 -13.36778 -12.97252 -12.84046 -12.80982 -12.59282 -12.41629 -12.26887 -12.18647 -12.10505 -11.95223 -11.51251 -11.44023 -11.16367 -11.05288 -10.93117 -10.84437 -10.52863 -10.30923 -10.18472 -9.88315 -9.48021 -9.41673 -9.05302 -8.62531 -8.20532 -7.79255 -6.32795 -4.36974 1.25946 1.94115 2.21025 2.99321 3.06285 3.15422 3.24171 3.27794 3.28561 3.88160 4.22121 4.24128 4.31372 4.64512 4.76535 4.84126 4.86317 4.97095 5.01158 5.10896 5.12470 5.17482 5.38281 5.57373 5.67527 5.74969 5.88347 5.89228 5.95231 6.05184 6.12831 6.16251 6.32635 6.45570 6.51615 6.53654 6.68543 6.69567 6.99492 7.16366 7.47447 7.50808 7.64878 7.69729 7.93379 8.25716 8.64002 8.84394 9.30545 10.74314 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003991 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.612686 B = 7014.213091 C = 8228.010120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.117 3.883 3 N -0.303 5.303 4 N -0.366 5.366 5 C 0.100 3.900 6 C 0.105 3.895 7 C -0.194 4.194 8 C 0.170 3.830 9 N -0.300 5.300 10 O -0.173 6.173 11 C 0.035 3.965 12 H 0.117 0.883 13 C 0.517 3.483 14 O -0.550 6.550 15 N -0.587 5.587 16 C 0.094 3.906 17 C 0.246 3.754 18 H 0.061 0.939 19 C -0.144 4.144 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.071 3.929 23 N -0.887 5.887 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 C -0.134 4.134 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.189 0.811 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.017 0.983 42 H 0.265 0.735 43 H 0.119 0.881 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 12.145 -5.011 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 N -0.125 5.125 4 N -0.144 5.144 5 C -0.041 4.041 6 C -0.047 4.047 7 C -0.207 4.207 8 C -0.020 4.020 9 N -0.042 5.042 10 O -0.192 6.192 11 C -0.027 4.027 12 H 0.135 0.865 13 C 0.302 3.698 14 O -0.429 6.429 15 N -0.319 5.319 16 C -0.049 4.049 17 C 0.145 3.855 18 H 0.078 0.922 19 C -0.203 4.203 20 C -0.573 4.573 21 H 0.083 0.917 22 C -0.132 4.132 23 N -0.525 5.525 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.174 4.174 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.206 0.794 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.529 13.561 -5.383 14.600 hybrid contribution 1.572 -1.962 0.989 2.701 sum 2.100 11.599 -4.394 12.579 Atomic orbital electron populations 1.20345 0.85751 1.03995 1.03623 1.22552 0.97265 0.89052 0.96221 1.77181 0.86066 1.22579 1.26665 1.48268 1.06035 1.04679 1.55442 1.21968 0.83781 0.94638 1.03753 1.22991 0.98860 0.84986 0.97884 1.17868 0.91906 0.89413 1.21496 1.23214 0.92221 0.92655 0.93905 1.78376 1.18275 0.92240 1.15261 1.91309 1.28997 1.10870 1.88005 1.23451 0.84771 0.93421 1.01092 0.86514 1.19887 0.81651 0.84927 0.83351 1.90648 1.49556 1.70446 1.32292 1.48150 1.21446 1.20122 1.42166 1.21455 1.01054 0.85580 0.96857 1.19209 0.84837 0.96229 0.85211 0.92175 1.22043 1.00469 0.98754 0.99019 1.21327 1.30965 1.03168 1.01855 0.91722 1.24861 0.95431 0.95355 0.97581 1.69901 1.35147 1.17471 1.29937 0.86517 0.78904 0.81700 0.80629 1.20481 1.21083 1.19702 1.22992 1.00222 0.88835 1.05354 0.90085 0.90938 0.88843 0.90349 0.88987 0.88864 0.79439 0.93865 0.90430 0.91862 0.90263 0.94355 0.96396 0.92484 0.86269 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.03 36.01 0.36 -0.58 16 2 C 0.12 1.61 7.26 -82.02 -0.60 1.02 16 3 N -0.30 -4.06 12.51 33.89 0.42 -3.63 16 4 N -0.37 -3.95 3.99 -67.57 -0.27 -4.22 16 5 C 0.10 0.59 11.45 59.85 0.69 1.28 16 6 C 0.11 1.17 11.35 -16.48 -0.19 0.99 16 7 C -0.19 -2.71 6.12 -105.12 -0.64 -3.35 16 8 C 0.17 2.73 7.27 -79.43 -0.58 2.15 16 9 N -0.30 -5.48 10.71 35.29 0.38 -5.10 16 10 O -0.17 -3.64 11.83 -30.20 -0.36 -3.99 16 11 C 0.03 0.67 3.18 -26.99 -0.09 0.59 16 12 H 0.12 2.32 7.64 -51.93 -0.40 1.92 16 13 C 0.52 11.07 7.00 -10.99 -0.08 10.99 16 14 O -0.55 -13.23 16.15 -13.27 -0.21 -13.45 16 15 N -0.59 -12.07 2.75 -175.26 -0.48 -12.56 16 16 C 0.09 1.73 9.41 59.85 0.56 2.29 16 17 C 0.25 5.27 2.11 -69.08 -0.15 5.12 16 18 H 0.06 1.32 4.15 -51.93 -0.22 1.10 16 19 C -0.14 -2.87 9.12 37.16 0.34 -2.53 16 20 C -0.53 -12.90 8.05 -34.44 -0.28 -13.17 16 21 H 0.06 1.60 7.09 -52.49 -0.37 1.23 16 22 C 0.07 1.73 5.18 -17.82 -0.09 1.64 16 23 N -0.89 -21.95 12.15 55.43 0.67 -21.27 16 24 Si 0.90 19.40 29.55 -169.99 -5.02 14.38 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 C -0.13 -2.18 5.50 -26.50 -0.15 -2.32 16 29 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.22 6.70 -51.93 -0.35 0.87 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.41 6.87 -51.93 -0.36 1.05 16 38 H 0.06 1.16 7.37 -51.93 -0.38 0.78 16 39 H 0.08 1.71 6.82 -51.93 -0.35 1.35 16 40 H 0.04 0.74 7.56 -51.93 -0.39 0.34 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 43 H 0.12 1.83 6.90 -51.93 -0.36 1.47 16 44 H 0.10 1.58 7.90 -51.93 -0.41 1.17 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -31.57 366.33 -6.33 -37.91 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.10 Total: 2.31 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.88 Total: 4.10 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.72 Total: -46.78 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.57 Total: -17.44 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.57 -6.33 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.798 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds