Wall clock time and date at job start Tue Mar 31 2020 13:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30537 * 125.95458 * 2 1 4 4 N 1.39950 * 108.85454 * 180.25900 * 3 2 1 5 5 C 1.46499 * 125.79897 * 179.74730 * 4 3 2 6 6 C 1.34607 * 108.40105 * 359.75734 * 4 3 2 7 7 C 1.37849 * 107.40991 * 359.97438 * 6 4 3 8 8 C 1.47562 * 126.37851 * 179.97438 * 7 6 4 9 9 N 1.29146 * 125.86990 * 180.02562 * 8 7 6 10 10 O 1.41399 * 112.85684 * 179.64416 * 9 8 7 11 11 C 1.44203 * 107.59861 * 17.49599 * 10 9 8 12 12 H 1.09005 * 110.99837 * 92.71678 * 11 10 9 13 13 C 1.50697 * 110.96831 * 216.46559 * 11 10 9 14 14 O 1.21282 * 120.00298 * 4.42777 * 13 11 10 15 15 N 1.34777 * 119.99547 * 184.14627 * 13 11 10 16 16 C 1.46503 * 119.99932 * 175.14147 * 15 13 11 17 17 C 1.46500 * 120.00369 * 355.14652 * 15 13 11 18 18 H 1.09001 * 109.46789 * 0.02562 * 17 15 13 19 19 C 1.52995 * 109.47184 * 239.99709 * 17 15 13 20 20 C 1.50703 * 109.46913 * 119.99662 * 17 15 13 21 21 H 1.07995 * 120.00336 * 5.42069 * 20 17 15 22 22 C 1.37879 * 119.99703 * 185.41898 * 20 17 15 23 23 N 1.31519 * 120.00185 * 9.29432 * 22 20 17 24 24 Si 1.86804 * 120.00187 * 189.29215 * 22 20 17 25 25 H 1.48497 * 109.46703 * 94.99054 * 24 22 20 26 26 H 1.48497 * 109.47323 * 214.99431 * 24 22 20 27 27 H 1.48504 * 109.46799 * 334.99382 * 24 22 20 28 28 C 1.51685 * 125.86816 * 0.02562 * 8 7 6 29 29 H 1.09008 * 109.46942 * 270.14315 * 1 2 3 30 30 H 1.08997 * 109.47006 * 30.14403 * 1 2 3 31 31 H 1.08996 * 109.47243 * 150.14629 * 1 2 3 32 32 H 1.08993 * 109.47651 * 270.00927 * 5 4 3 33 33 H 1.09003 * 109.46833 * 30.00865 * 5 4 3 34 34 H 1.08998 * 109.46942 * 150.00073 * 5 4 3 35 35 H 1.07996 * 126.29083 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.47146 * 94.28449 * 16 15 13 37 37 H 1.09003 * 109.47697 * 214.28850 * 16 15 13 38 38 H 1.09005 * 109.47296 * 334.28933 * 16 15 13 39 39 H 1.08996 * 109.47176 * 183.27465 * 19 17 15 40 40 H 1.08999 * 109.47384 * 303.27102 * 19 17 15 41 41 H 1.08995 * 109.47090 * 63.27340 * 19 17 15 42 42 H 0.97000 * 120.00464 * 179.97438 * 23 22 20 43 43 H 1.08997 * 110.79279 * 46.37523 * 28 8 7 44 44 H 1.09001 * 110.95979 * 282.98702 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0567 0.0000 4 7 3.6111 0.6452 -0.0060 5 6 4.7795 1.5289 -0.0132 6 6 3.6417 -0.7005 -0.0043 7 6 2.3361 -1.1428 0.0033 8 6 1.8883 -2.5488 0.0072 9 7 0.6614 -2.9522 0.0139 10 8 0.5467 -4.3615 0.0079 11 6 1.8208 -4.9044 0.4096 12 1 1.8505 -5.0760 1.4857 13 6 2.1287 -6.1722 -0.3446 14 8 1.3806 -6.5545 -1.2192 15 7 3.2386 -6.8782 -0.0510 16 6 3.4839 -8.1643 -0.7083 17 6 4.1997 -6.3596 0.9256 18 1 3.8499 -5.3996 1.3051 19 6 5.5618 -6.1772 0.2532 20 6 4.3299 -7.3336 2.0682 21 1 3.8227 -8.2861 2.0263 22 6 5.0967 -7.0086 3.1670 23 7 5.5639 -5.7869 3.3049 24 14 5.4722 -8.3035 4.4600 25 1 6.7882 -8.9267 4.1688 26 1 5.5117 -7.6670 5.8011 27 1 4.4149 -9.3461 4.4379 28 6 2.7898 -3.7687 0.0040 29 1 -0.3633 0.0026 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8912 -0.5115 32 1 5.0642 1.7466 -1.0425 33 1 4.5350 2.4586 0.5006 34 1 5.6087 1.0390 0.4973 35 1 4.5265 -1.3198 -0.0081 36 1 4.1147 -8.0104 -1.5838 37 1 3.9851 -8.8380 -0.0132 38 1 2.5343 -8.6015 -1.0171 39 1 6.2909 -5.8469 0.9930 40 1 5.8847 -7.1254 -0.1768 41 1 5.4804 -5.4295 -0.5357 42 1 6.1030 -5.5581 4.0781 43 1 3.5888 -3.6612 0.7374 44 1 3.2004 -3.9474 -0.9898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:07 Heat of formation + Delta-G solvation = 49.297023 kcal Electronic energy + Delta-G solvation = -27505.519195 eV Core-core repulsion = 23654.459422 eV Total energy + Delta-G solvation = -3851.059774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37885 -41.61474 -39.87757 -37.42097 -35.39849 -34.55113 -34.03730 -32.30146 -31.13838 -31.07661 -30.11142 -28.08151 -27.19708 -26.62609 -25.01665 -23.29607 -23.21329 -21.22122 -20.62166 -19.95002 -18.64856 -18.53537 -17.87789 -17.07743 -16.78290 -16.65910 -16.57984 -16.31883 -15.91317 -15.31176 -14.99418 -14.53824 -14.49153 -14.44241 -14.24738 -14.03694 -13.91383 -13.68607 -13.61643 -13.23105 -13.10547 -13.07871 -12.99125 -12.88715 -12.82042 -12.70983 -12.54409 -12.24432 -12.05772 -11.97116 -11.43794 -11.34592 -11.14193 -10.66209 -10.45067 -10.31237 -9.47298 -9.31298 -8.17544 -6.25571 0.20488 0.93035 1.37124 1.43416 1.48297 1.50294 1.55660 1.76432 1.95587 2.38670 2.51051 2.96624 3.14464 3.29788 3.38591 3.58284 3.75552 3.85178 3.93696 4.11505 4.41826 4.43012 4.47386 4.48717 4.55276 4.62588 4.68401 4.73574 4.75438 4.76019 4.89302 4.96611 4.97638 4.98376 5.01910 5.03811 5.37246 5.52683 5.54231 5.72336 5.91103 5.92136 6.15927 6.32625 6.54819 6.57708 6.80858 7.15873 7.44070 8.88167 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003991 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.612686 B = 7014.213091 C = 8228.010120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.105 3.895 3 N -0.324 5.324 4 N -0.359 5.359 5 C 0.087 3.913 6 C 0.128 3.872 7 C -0.232 4.232 8 C 0.192 3.808 9 N -0.326 5.326 10 O -0.210 6.210 11 C 0.033 3.967 12 H 0.106 0.894 13 C 0.514 3.486 14 O -0.582 6.582 15 N -0.585 5.585 16 C 0.091 3.909 17 C 0.248 3.752 18 H 0.057 0.943 19 C -0.134 4.134 20 C -0.549 4.549 21 H 0.052 0.948 22 C 0.039 3.961 23 N -0.901 5.901 24 Si 0.943 3.057 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.279 1.279 28 C -0.123 4.123 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.224 0.776 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.267 0.733 43 H 0.133 0.867 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 13.344 -5.153 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 N -0.146 5.146 4 N -0.136 5.136 5 C -0.052 4.052 6 C -0.026 4.026 7 C -0.245 4.245 8 C 0.003 3.997 9 N -0.071 5.071 10 O -0.225 6.225 11 C -0.029 4.029 12 H 0.124 0.876 13 C 0.300 3.700 14 O -0.464 6.464 15 N -0.316 5.316 16 C -0.051 4.051 17 C 0.148 3.852 18 H 0.075 0.925 19 C -0.192 4.192 20 C -0.588 4.588 21 H 0.070 0.930 22 C -0.163 4.163 23 N -0.539 5.539 24 Si 0.769 3.231 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.204 1.204 28 C -0.162 4.162 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.240 0.760 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.151 0.849 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.877 14.760 -5.521 16.019 hybrid contribution 0.949 -2.216 1.035 2.623 sum 3.826 12.544 -4.487 13.860 Atomic orbital electron populations 1.20328 0.85406 1.03960 1.03837 1.22766 0.97935 0.89246 0.96236 1.77142 0.87427 1.22697 1.27375 1.48732 1.06236 1.05249 1.53427 1.22428 0.82721 0.94516 1.05489 1.23501 0.98813 0.85407 0.94926 1.18000 0.93453 0.88246 1.24839 1.23508 0.91447 0.93598 0.91138 1.78436 1.19478 0.90350 1.18872 1.91278 1.29873 1.12882 1.88515 1.23371 0.85716 0.93740 1.00055 0.87616 1.20204 0.81322 0.85412 0.83041 1.90620 1.50505 1.71406 1.33878 1.48213 1.21055 1.20582 1.41774 1.21568 1.01289 0.84769 0.97513 1.19142 0.85780 0.95410 0.84907 0.92546 1.21885 0.98608 0.99662 0.99077 1.21519 1.30976 1.03212 1.03066 0.93017 1.25341 0.95496 0.96633 0.98874 1.69943 1.35411 1.18132 1.30373 0.85782 0.78565 0.79845 0.78864 1.19910 1.21145 1.20379 1.22943 0.99650 0.87507 1.06141 0.89750 0.89439 0.90313 0.88548 0.88472 0.86069 0.75967 0.91749 0.90294 0.92269 0.91808 0.94058 0.93909 0.92356 0.84918 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.03 71.24 0.71 -1.13 16 2 C 0.11 2.82 7.26 43.48 0.32 3.14 16 3 N -0.32 -8.12 12.51 -46.70 -0.58 -8.71 16 4 N -0.36 -6.67 3.99 -367.68 -1.47 -8.14 16 5 C 0.09 0.71 11.45 127.77 1.46 2.17 16 6 C 0.13 2.45 11.35 84.18 0.96 3.41 16 7 C -0.23 -6.15 6.12 -20.19 -0.12 -6.27 16 8 C 0.19 6.05 7.27 45.73 0.33 6.38 16 9 N -0.33 -12.15 10.71 -42.26 -0.45 -12.60 16 10 O -0.21 -9.11 11.83 -20.34 -0.24 -9.35 16 11 C 0.03 1.31 3.18 30.43 0.10 1.41 16 12 H 0.11 4.33 7.64 -2.38 -0.02 4.31 16 13 C 0.51 22.12 7.00 87.66 0.61 22.73 16 14 O -0.58 -28.43 16.15 14.96 0.24 -28.19 16 15 N -0.59 -23.70 2.75 -826.78 -2.28 -25.98 16 16 C 0.09 3.28 9.41 127.77 1.20 4.48 16 17 C 0.25 10.37 2.11 44.24 0.09 10.46 16 18 H 0.06 2.41 4.15 -2.39 -0.01 2.40 16 19 C -0.13 -5.01 9.12 71.98 0.66 -4.36 16 20 C -0.55 -26.14 8.05 25.60 0.21 -25.93 16 21 H 0.05 2.55 7.09 -2.91 -0.02 2.53 16 22 C 0.04 1.84 5.18 84.65 0.44 2.27 16 23 N -0.90 -43.38 12.15 21.45 0.26 -43.12 16 24 Si 0.94 39.12 29.55 68.60 2.03 41.14 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 C -0.12 -3.84 5.50 30.74 0.17 -3.68 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.08 2.12 6.70 -2.39 -0.02 2.11 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.08 2.80 6.87 -2.39 -0.02 2.79 16 38 H 0.06 2.17 7.37 -2.38 -0.02 2.15 16 39 H 0.06 2.61 6.82 -2.39 -0.02 2.60 16 40 H 0.04 1.49 7.56 -2.39 -0.02 1.47 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.27 12.36 8.31 -92.71 -0.77 11.59 16 43 H 0.13 3.78 6.90 -2.39 -0.02 3.77 16 44 H 0.11 3.28 7.90 -2.39 -0.02 3.26 16 Total: -1.00 -68.02 366.33 5.66 -62.36 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.02 Total: 17.50 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 7.13 Total: 15.08 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -4.52 Total: -98.54 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: 0.00 Total: -37.54 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.14 kcal Total: -68.02 5.66 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.654 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds