Wall clock time and date at job start Tue Mar 31 2020 13:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30540 * 125.96073 * 2 1 4 4 N 1.39943 * 108.85855 * 180.28447 * 3 2 1 5 5 C 1.46494 * 125.80162 * 179.69594 * 4 3 2 6 6 C 1.34605 * 108.40419 * 359.71852 * 4 3 2 7 7 C 1.37858 * 107.40595 * 359.97438 * 6 4 3 8 8 C 1.47560 * 126.37791 * 180.02562 * 7 6 4 9 9 N 1.29151 * 125.87308 * 180.02562 * 8 7 6 10 10 O 1.41385 * 112.86112 * 180.33808 * 9 8 7 11 11 C 1.44202 * 107.60030 * 342.49441 * 10 9 8 12 12 H 1.09002 * 110.97156 * 267.30274 * 11 10 9 13 13 C 1.50696 * 110.97000 * 143.56963 * 11 10 9 14 14 O 1.21278 * 120.00462 * 359.49930 * 13 11 10 15 15 N 1.34779 * 119.99924 * 179.49118 * 13 11 10 16 16 C 1.46501 * 120.00197 * 0.02562 * 15 13 11 17 17 C 1.46501 * 119.99954 * 179.97438 * 15 13 11 18 18 H 1.08997 * 109.47330 * 0.02562 * 17 15 13 19 19 C 1.53001 * 109.47268 * 240.00604 * 17 15 13 20 20 C 1.50700 * 109.46715 * 120.00829 * 17 15 13 21 21 H 1.07999 * 120.00343 * 359.97438 * 20 17 15 22 22 C 1.37879 * 120.00010 * 179.97438 * 20 17 15 23 23 N 1.31516 * 119.99907 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 120.00210 * 179.97438 * 22 20 17 25 25 H 1.48494 * 109.46899 * 90.00039 * 24 22 20 26 26 H 1.48493 * 109.47344 * 210.00296 * 24 22 20 27 27 H 1.48509 * 109.46861 * 330.00219 * 24 22 20 28 28 C 1.51692 * 125.86966 * 0.02562 * 8 7 6 29 29 H 1.08999 * 109.47314 * 270.19285 * 1 2 3 30 30 H 1.09009 * 109.47083 * 30.18181 * 1 2 3 31 31 H 1.08997 * 109.47662 * 150.18727 * 1 2 3 32 32 H 1.09005 * 109.47061 * 270.02639 * 5 4 3 33 33 H 1.09000 * 109.47340 * 30.02157 * 5 4 3 34 34 H 1.08999 * 109.47367 * 150.02762 * 5 4 3 35 35 H 1.07995 * 126.29867 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.47668 * 89.99198 * 16 15 13 37 37 H 1.09002 * 109.47122 * 209.99782 * 16 15 13 38 38 H 1.09007 * 109.46553 * 329.99562 * 16 15 13 39 39 H 1.08994 * 109.47056 * 60.00373 * 19 17 15 40 40 H 1.08999 * 109.47042 * 180.02562 * 19 17 15 41 41 H 1.08998 * 109.46981 * 299.99952 * 19 17 15 42 42 H 0.96999 * 119.99927 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.78800 * 77.11225 * 28 8 7 44 44 H 1.09002 * 110.79291 * 313.64232 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0566 0.0000 4 7 3.6111 0.6451 -0.0066 5 6 4.7795 1.5287 -0.0150 6 6 3.6417 -0.7006 -0.0043 7 6 2.3360 -1.1428 0.0042 8 6 1.8881 -2.5488 0.0099 9 7 0.6613 -2.9522 0.0174 10 8 0.5465 -4.3614 0.0290 11 6 1.8162 -4.9057 -0.3846 12 1 1.8340 -5.0801 -1.4604 13 6 2.1317 -6.1715 0.3697 14 8 1.3569 -6.5897 1.2037 15 7 3.2750 -6.8392 0.1172 16 6 4.2112 -6.3340 -0.8900 17 6 3.5820 -8.0695 0.8509 18 1 2.7758 -8.2854 1.5519 19 6 4.8928 -7.8913 1.6197 20 6 3.7214 -9.2125 -0.1213 21 1 3.5936 -9.0399 -1.1797 22 6 4.0120 -10.4788 0.3404 23 7 4.1672 -10.6892 1.6293 24 14 4.1841 -11.8958 -0.8646 25 1 5.5981 -12.0015 -1.3056 26 1 3.7761 -13.1608 -0.2026 27 1 3.3147 -11.6513 -2.0435 28 6 2.7896 -3.7688 0.0079 29 1 -0.3634 0.0035 1.0276 30 1 -0.3634 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5109 32 1 5.0633 1.7460 -1.0448 33 1 4.5355 2.4587 0.4985 34 1 5.6091 1.0389 0.4948 35 1 4.5263 -1.3200 -0.0077 36 1 4.9241 -5.6586 -0.4172 37 1 4.7464 -7.1700 -1.3404 38 1 3.6595 -5.7975 -1.6621 39 1 4.7920 -7.0646 2.3229 40 1 5.1214 -8.8069 2.1652 41 1 5.6989 -7.6757 0.9185 42 1 4.3713 -11.5801 1.9542 43 1 3.2076 -3.9425 0.9995 44 1 3.5812 -3.6638 -0.7340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:11 Heat of formation + Delta-G solvation = 71.600891 kcal Electronic energy + Delta-G solvation = -26919.184279 eV Core-core repulsion = 23069.091673 eV Total energy + Delta-G solvation = -3850.092605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62686 -40.27849 -38.40282 -35.42851 -34.63790 -33.14767 -32.96750 -31.06376 -30.42501 -29.37595 -29.00832 -26.30653 -26.03569 -25.27493 -24.33420 -22.53033 -21.16816 -20.44964 -19.46032 -18.57837 -17.41931 -16.91972 -16.45501 -16.01562 -15.98446 -15.48325 -15.39168 -14.67964 -14.41590 -14.25940 -13.92656 -13.76255 -13.49166 -13.21281 -12.99183 -12.78130 -12.61429 -12.55285 -12.46230 -12.37460 -12.30477 -11.80904 -11.69376 -11.54762 -11.14266 -11.09456 -10.86262 -10.76262 -10.47228 -10.31577 -10.20820 -10.09559 -9.62444 -9.24188 -8.97011 -8.47690 -8.41589 -7.70602 -6.11347 -4.19778 1.02576 1.73875 2.00152 2.80303 2.92594 3.19657 3.24137 3.31930 3.34748 3.77028 3.97446 4.10058 4.35534 4.38396 4.52676 4.58171 4.67340 4.73184 4.85069 4.93688 4.97740 5.06990 5.20449 5.28510 5.40830 5.51605 5.52747 5.65309 5.69731 5.77685 5.86584 5.89651 6.25014 6.33424 6.46920 6.68418 6.75151 6.98661 7.26702 7.31506 7.43928 7.50081 7.65783 7.95885 8.13290 8.40135 8.76396 8.93464 9.46767 10.94066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002757 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.994043 B =10152.789427 C =10785.559237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.300 5.300 4 N -0.365 5.365 5 C 0.099 3.901 6 C 0.101 3.899 7 C -0.194 4.194 8 C 0.165 3.835 9 N -0.295 5.295 10 O -0.166 6.166 11 C 0.028 3.972 12 H 0.106 0.894 13 C 0.509 3.491 14 O -0.525 6.525 15 N -0.587 5.587 16 C 0.079 3.921 17 C 0.259 3.741 18 H 0.064 0.936 19 C -0.146 4.146 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.134 4.134 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.187 0.813 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.011 0.989 40 H 0.094 0.906 41 H 0.030 0.970 42 H 0.264 0.736 43 H 0.107 0.893 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 23.263 -5.683 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.122 5.122 4 N -0.143 5.143 5 C -0.042 4.042 6 C -0.052 4.052 7 C -0.207 4.207 8 C -0.025 4.025 9 N -0.037 5.037 10 O -0.184 6.184 11 C -0.034 4.034 12 H 0.124 0.876 13 C 0.293 3.707 14 O -0.402 6.402 15 N -0.320 5.320 16 C -0.065 4.065 17 C 0.159 3.841 18 H 0.082 0.918 19 C -0.204 4.204 20 C -0.567 4.567 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.174 4.174 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.204 0.796 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.510 24.376 -5.027 25.136 hybrid contribution 1.347 -2.056 -0.796 2.584 sum 4.857 22.320 -5.823 23.573 Atomic orbital electron populations 1.20357 0.85632 1.04053 1.03769 1.22582 0.97346 0.88995 0.96062 1.77223 0.86008 1.22545 1.26468 1.48293 1.06119 1.04655 1.55249 1.21981 0.83644 0.94686 1.03883 1.22920 0.98657 0.85093 0.98499 1.17880 0.91912 0.89418 1.21526 1.23202 0.92145 0.92576 0.94603 1.78413 1.18274 0.92460 1.14536 1.91383 1.29049 1.10576 1.87433 1.23570 0.85291 0.94197 1.00388 0.87613 1.19782 0.82641 0.84454 0.83845 1.90710 1.47695 1.67780 1.33980 1.48204 1.18494 1.26485 1.38809 1.21712 0.93471 1.00179 0.91139 1.18991 0.94896 0.78615 0.91599 0.91799 1.22083 0.98224 1.01260 0.98836 1.21300 1.49208 0.92652 0.93509 0.92145 1.24894 0.94905 0.98624 0.95313 1.69875 1.47802 1.22309 1.12484 0.86478 0.78233 0.81590 0.81004 1.20613 1.21053 1.19880 1.22949 0.99851 0.89107 1.05484 0.89972 0.90820 0.88858 0.90212 0.88891 0.88951 0.79613 0.93634 0.89637 0.92950 0.97020 0.88719 0.95093 0.92602 0.87494 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.03 36.00 0.36 -0.45 16 2 C 0.12 1.37 7.26 -82.03 -0.60 0.78 16 3 N -0.30 -3.39 12.51 33.89 0.42 -2.97 16 4 N -0.36 -3.02 3.99 -67.57 -0.27 -3.29 16 5 C 0.10 0.35 11.45 59.84 0.69 1.04 16 6 C 0.10 0.81 11.35 -16.48 -0.19 0.62 16 7 C -0.19 -2.17 6.12 -105.12 -0.64 -2.81 16 8 C 0.16 2.15 7.27 -79.43 -0.58 1.57 16 9 N -0.30 -4.75 10.71 35.29 0.38 -4.37 16 10 O -0.17 -3.18 11.82 -30.23 -0.36 -3.54 16 11 C 0.03 0.46 3.23 -26.98 -0.09 0.37 16 12 H 0.11 1.50 7.22 -51.93 -0.38 1.12 16 13 C 0.51 10.75 7.03 -10.99 -0.08 10.67 16 14 O -0.53 -13.74 15.91 -13.31 -0.21 -13.95 16 15 N -0.59 -12.02 2.75 -175.26 -0.48 -12.50 16 16 C 0.08 1.18 8.24 59.85 0.49 1.68 16 17 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 18 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 19 C -0.15 -3.35 8.97 37.16 0.33 -3.02 16 20 C -0.53 -13.95 7.99 -34.44 -0.28 -14.22 16 21 H 0.06 1.56 7.34 -52.49 -0.39 1.17 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 24 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 28 C -0.13 -1.64 5.49 -26.48 -0.15 -1.78 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.09 1.05 6.70 -51.93 -0.35 0.70 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 38 H 0.05 0.63 6.14 -51.93 -0.32 0.31 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 41 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.11 1.36 7.91 -51.93 -0.41 0.95 16 44 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -36.03 366.22 -6.58 -42.61 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.19 Total: -1.44 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.99 Total: 2.37 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.68 Total: -47.27 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.57 Total: -17.49 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.03 -6.58 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.209 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds