Wall clock time and date at job start Tue Mar 31 2020 13:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30540 * 125.96073 * 2 1 4 4 N 1.39943 * 108.85855 * 180.28447 * 3 2 1 5 5 C 1.46494 * 125.80162 * 179.69594 * 4 3 2 6 6 C 1.34605 * 108.40419 * 359.71852 * 4 3 2 7 7 C 1.37858 * 107.40595 * 359.97438 * 6 4 3 8 8 C 1.47560 * 126.37791 * 180.02562 * 7 6 4 9 9 N 1.29151 * 125.87308 * 180.02562 * 8 7 6 10 10 O 1.41385 * 112.86112 * 180.33808 * 9 8 7 11 11 C 1.44202 * 107.60030 * 342.49441 * 10 9 8 12 12 H 1.09002 * 110.97156 * 267.30274 * 11 10 9 13 13 C 1.50696 * 110.97000 * 143.56963 * 11 10 9 14 14 O 1.21278 * 120.00462 * 359.49930 * 13 11 10 15 15 N 1.34779 * 119.99924 * 179.49118 * 13 11 10 16 16 C 1.46501 * 120.00197 * 0.02562 * 15 13 11 17 17 C 1.46501 * 119.99954 * 179.97438 * 15 13 11 18 18 H 1.08997 * 109.47330 * 0.02562 * 17 15 13 19 19 C 1.53001 * 109.47268 * 240.00604 * 17 15 13 20 20 C 1.50700 * 109.46715 * 120.00829 * 17 15 13 21 21 H 1.07999 * 120.00343 * 359.97438 * 20 17 15 22 22 C 1.37879 * 120.00010 * 179.97438 * 20 17 15 23 23 N 1.31516 * 119.99907 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 120.00210 * 179.97438 * 22 20 17 25 25 H 1.48494 * 109.46899 * 90.00039 * 24 22 20 26 26 H 1.48493 * 109.47344 * 210.00296 * 24 22 20 27 27 H 1.48509 * 109.46861 * 330.00219 * 24 22 20 28 28 C 1.51692 * 125.86966 * 0.02562 * 8 7 6 29 29 H 1.08999 * 109.47314 * 270.19285 * 1 2 3 30 30 H 1.09009 * 109.47083 * 30.18181 * 1 2 3 31 31 H 1.08997 * 109.47662 * 150.18727 * 1 2 3 32 32 H 1.09005 * 109.47061 * 270.02639 * 5 4 3 33 33 H 1.09000 * 109.47340 * 30.02157 * 5 4 3 34 34 H 1.08999 * 109.47367 * 150.02762 * 5 4 3 35 35 H 1.07995 * 126.29867 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.47668 * 89.99198 * 16 15 13 37 37 H 1.09002 * 109.47122 * 209.99782 * 16 15 13 38 38 H 1.09007 * 109.46553 * 329.99562 * 16 15 13 39 39 H 1.08994 * 109.47056 * 60.00373 * 19 17 15 40 40 H 1.08999 * 109.47042 * 180.02562 * 19 17 15 41 41 H 1.08998 * 109.46981 * 299.99952 * 19 17 15 42 42 H 0.96999 * 119.99927 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.78800 * 77.11225 * 28 8 7 44 44 H 1.09002 * 110.79291 * 313.64232 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0566 0.0000 4 7 3.6111 0.6451 -0.0066 5 6 4.7795 1.5287 -0.0150 6 6 3.6417 -0.7006 -0.0043 7 6 2.3360 -1.1428 0.0042 8 6 1.8881 -2.5488 0.0099 9 7 0.6613 -2.9522 0.0174 10 8 0.5465 -4.3614 0.0290 11 6 1.8162 -4.9057 -0.3846 12 1 1.8340 -5.0801 -1.4604 13 6 2.1317 -6.1715 0.3697 14 8 1.3569 -6.5897 1.2037 15 7 3.2750 -6.8392 0.1172 16 6 4.2112 -6.3340 -0.8900 17 6 3.5820 -8.0695 0.8509 18 1 2.7758 -8.2854 1.5519 19 6 4.8928 -7.8913 1.6197 20 6 3.7214 -9.2125 -0.1213 21 1 3.5936 -9.0399 -1.1797 22 6 4.0120 -10.4788 0.3404 23 7 4.1672 -10.6892 1.6293 24 14 4.1841 -11.8958 -0.8646 25 1 5.5981 -12.0015 -1.3056 26 1 3.7761 -13.1608 -0.2026 27 1 3.3147 -11.6513 -2.0435 28 6 2.7896 -3.7688 0.0079 29 1 -0.3634 0.0035 1.0276 30 1 -0.3634 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5109 32 1 5.0633 1.7460 -1.0448 33 1 4.5355 2.4587 0.4985 34 1 5.6091 1.0389 0.4948 35 1 4.5263 -1.3200 -0.0077 36 1 4.9241 -5.6586 -0.4172 37 1 4.7464 -7.1700 -1.3404 38 1 3.6595 -5.7975 -1.6621 39 1 4.7920 -7.0646 2.3229 40 1 5.1214 -8.8069 2.1652 41 1 5.6989 -7.6757 0.9185 42 1 4.3713 -11.5801 1.9542 43 1 3.2076 -3.9425 0.9995 44 1 3.5812 -3.6638 -0.7340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:10 Heat of formation + Delta-G solvation = 46.860595 kcal Electronic energy + Delta-G solvation = -26920.257098 eV Core-core repulsion = 23069.091673 eV Total energy + Delta-G solvation = -3851.165425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36020 -41.55051 -39.87510 -37.18805 -35.38027 -34.91980 -34.02472 -32.50673 -31.17973 -30.57293 -30.10510 -27.66361 -27.29294 -26.63794 -25.63434 -23.29318 -22.82610 -21.20266 -20.48966 -19.99395 -18.61701 -18.45775 -17.86017 -17.29794 -16.88748 -16.65408 -16.58645 -16.22233 -15.81261 -15.20547 -14.98414 -14.66192 -14.45252 -14.33431 -14.19456 -13.93820 -13.85730 -13.75780 -13.51249 -13.22826 -13.11488 -13.07357 -13.00951 -12.95293 -12.74872 -12.69094 -12.60396 -12.19826 -12.12981 -11.97736 -11.39375 -11.26721 -11.15627 -10.60034 -10.45109 -10.30183 -9.38577 -9.30067 -8.14501 -6.31064 0.24785 0.95179 1.41154 1.43731 1.45823 1.53320 1.58096 1.76543 1.97723 2.37368 2.53345 2.96256 3.14106 3.31643 3.40616 3.61530 3.78251 3.87167 3.91003 4.13280 4.43031 4.43102 4.45522 4.50504 4.54562 4.66962 4.73189 4.77161 4.78231 4.79005 4.90142 4.92902 4.97760 5.03288 5.05909 5.09958 5.48859 5.53539 5.58300 5.66541 5.94894 6.04026 6.16288 6.36880 6.59864 6.72844 6.77012 7.25254 7.43161 8.90005 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002757 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.994043 B =10152.789427 C =10785.559237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.102 3.898 3 N -0.329 5.329 4 N -0.360 5.360 5 C 0.087 3.913 6 C 0.133 3.867 7 C -0.233 4.233 8 C 0.190 3.810 9 N -0.331 5.331 10 O -0.218 6.218 11 C 0.033 3.967 12 H 0.132 0.868 13 C 0.500 3.500 14 O -0.595 6.595 15 N -0.587 5.587 16 C 0.068 3.932 17 C 0.261 3.739 18 H 0.002 0.998 19 C -0.130 4.130 20 C -0.539 4.539 21 H 0.064 0.936 22 C 0.015 3.985 23 N -0.918 5.918 24 Si 0.965 3.035 25 H -0.264 1.264 26 H -0.289 1.289 27 H -0.272 1.272 28 C -0.124 4.124 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.264 0.736 43 H 0.106 0.894 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 25.316 -7.905 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 N -0.152 5.152 4 N -0.137 5.137 5 C -0.051 4.051 6 C -0.022 4.022 7 C -0.246 4.246 8 C 0.001 3.999 9 N -0.078 5.078 10 O -0.233 6.233 11 C -0.029 4.029 12 H 0.149 0.851 13 C 0.286 3.714 14 O -0.476 6.476 15 N -0.318 5.318 16 C -0.073 4.073 17 C 0.159 3.841 18 H 0.020 0.980 19 C -0.188 4.188 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.185 4.185 23 N -0.557 5.557 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.215 1.215 27 H -0.196 1.196 28 C -0.163 4.163 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.252 0.748 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.112 26.466 -7.292 28.358 hybrid contribution 0.344 -2.506 -0.080 2.531 sum 7.455 23.960 -7.372 26.153 Atomic orbital electron populations 1.20309 0.85896 1.03896 1.03573 1.22740 0.97760 0.89639 0.96330 1.77177 0.87698 1.22873 1.27458 1.48749 1.06056 1.05576 1.53352 1.22425 0.82722 0.94503 1.05499 1.23604 0.98759 0.85177 0.94616 1.18006 0.93470 0.88130 1.25008 1.23555 0.91482 0.93701 0.91117 1.78502 1.20102 0.90247 1.18901 1.91356 1.30687 1.12947 1.88313 1.23562 0.86088 0.92786 1.00488 0.85053 1.20692 0.81746 0.85719 0.83228 1.90669 1.49845 1.69897 1.37162 1.48160 1.19371 1.25028 1.39253 1.22112 0.93495 1.00756 0.90946 1.18584 0.93647 0.80726 0.91106 0.97955 1.21844 0.97755 1.00245 0.98981 1.21586 1.48836 0.93455 0.93843 0.91750 1.25738 0.94663 1.01219 0.96869 1.70028 1.48615 1.22777 1.14257 0.85454 0.78881 0.78015 0.78650 1.18875 1.21500 1.19648 1.23022 0.99789 0.86470 1.07024 0.90229 0.89694 0.90207 0.88561 0.88967 0.85663 0.74811 0.89734 0.90727 0.89214 0.95927 0.91597 0.92646 0.92659 0.87589 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.03 71.23 0.71 -0.92 16 2 C 0.10 2.26 7.26 43.47 0.32 2.58 16 3 N -0.33 -6.80 12.51 -46.70 -0.58 -7.38 16 4 N -0.36 -4.53 3.99 -367.68 -1.47 -6.00 16 5 C 0.09 0.23 11.45 127.77 1.46 1.69 16 6 C 0.13 1.47 11.35 84.18 0.96 2.42 16 7 C -0.23 -4.57 6.12 -20.19 -0.12 -4.69 16 8 C 0.19 4.59 7.27 45.73 0.33 4.92 16 9 N -0.33 -10.74 10.71 -42.26 -0.45 -11.19 16 10 O -0.22 -8.62 11.82 -20.26 -0.24 -8.86 16 11 C 0.03 1.03 3.23 30.44 0.10 1.13 16 12 H 0.13 3.37 7.22 -2.39 -0.02 3.35 16 13 C 0.50 21.39 7.03 87.66 0.62 22.01 16 14 O -0.59 -33.12 15.91 15.02 0.24 -32.88 16 15 N -0.59 -23.60 2.75 -826.79 -2.28 -25.88 16 16 C 0.07 1.79 8.24 127.77 1.05 2.84 16 17 C 0.26 13.33 2.64 44.25 0.12 13.45 16 18 H 0.00 0.15 6.90 -2.39 -0.02 0.14 16 19 C -0.13 -5.95 8.97 71.98 0.65 -5.30 16 20 C -0.54 -28.67 7.99 25.60 0.20 -28.47 16 21 H 0.06 3.29 7.34 -2.91 -0.02 3.27 16 22 C 0.01 0.80 5.30 84.65 0.45 1.25 16 23 N -0.92 -52.61 11.32 21.45 0.24 -52.36 16 24 Si 0.96 42.48 29.54 68.60 2.03 44.50 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C -0.12 -2.58 5.49 30.75 0.17 -2.41 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.88 6.70 -2.39 -0.02 1.86 16 32 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 33 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.24 0.11 8.06 -2.91 -0.02 0.09 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.16 7.02 -2.39 -0.02 2.15 16 38 H 0.09 1.68 6.14 -2.38 -0.01 1.66 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 41 H 0.05 2.21 7.67 -2.39 -0.02 2.20 16 42 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.11 2.34 7.91 -2.39 -0.02 2.32 16 44 H 0.16 1.57 7.67 -2.39 -0.02 1.55 16 Total: -1.00 -87.43 366.22 5.51 -81.91 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.01 Total: 10.50 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.54 Total: -102.81 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: 0.00 Total: -41.75 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -87.43 5.51 -81.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.772 kcal (2) G-P(sol) polarization free energy of solvation -87.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds