Wall clock time and date at job start Tue Mar 31 2020 13:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30540 * 125.96073 * 2 1 4 4 N 1.39943 * 108.85855 * 180.28447 * 3 2 1 5 5 C 1.46494 * 125.80162 * 179.69594 * 4 3 2 6 6 C 1.34605 * 108.40419 * 359.71852 * 4 3 2 7 7 C 1.37858 * 107.40595 * 359.97438 * 6 4 3 8 8 C 1.47560 * 126.37791 * 180.02562 * 7 6 4 9 9 N 1.29151 * 125.87308 * 180.02562 * 8 7 6 10 10 O 1.41385 * 112.86112 * 180.33808 * 9 8 7 11 11 C 1.44202 * 107.60030 * 342.49441 * 10 9 8 12 12 H 1.09002 * 110.97156 * 267.30274 * 11 10 9 13 13 C 1.50696 * 110.97000 * 143.56963 * 11 10 9 14 14 O 1.21278 * 120.00462 * 359.49930 * 13 11 10 15 15 N 1.34779 * 119.99924 * 179.49118 * 13 11 10 16 16 C 1.46501 * 120.00197 * 0.02562 * 15 13 11 17 17 C 1.46501 * 119.99954 * 179.97438 * 15 13 11 18 18 H 1.08997 * 109.47330 * 0.02562 * 17 15 13 19 19 C 1.53001 * 109.46734 * 120.00781 * 17 15 13 20 20 C 1.50698 * 109.47488 * 240.00254 * 17 15 13 21 21 H 1.08005 * 120.00159 * 0.02562 * 20 17 15 22 22 C 1.37874 * 120.00326 * 179.97438 * 20 17 15 23 23 N 1.31515 * 120.00481 * 180.02562 * 22 20 17 24 24 Si 1.86802 * 119.99727 * 0.02562 * 22 20 17 25 25 H 1.48497 * 109.47156 * 89.99722 * 24 22 20 26 26 H 1.48507 * 109.47008 * 209.99555 * 24 22 20 27 27 H 1.48498 * 109.47061 * 329.99529 * 24 22 20 28 28 C 1.51692 * 125.86966 * 0.02562 * 8 7 6 29 29 H 1.08999 * 109.47314 * 270.19285 * 1 2 3 30 30 H 1.09009 * 109.47083 * 30.18181 * 1 2 3 31 31 H 1.08997 * 109.47662 * 150.18727 * 1 2 3 32 32 H 1.09005 * 109.47061 * 270.02639 * 5 4 3 33 33 H 1.09000 * 109.47340 * 30.02157 * 5 4 3 34 34 H 1.08999 * 109.47367 * 150.02762 * 5 4 3 35 35 H 1.07995 * 126.29867 * 180.02562 * 6 4 3 36 36 H 1.08997 * 109.47668 * 89.99198 * 16 15 13 37 37 H 1.09002 * 109.47122 * 209.99782 * 16 15 13 38 38 H 1.09007 * 109.46553 * 329.99562 * 16 15 13 39 39 H 1.09003 * 109.47148 * 59.99869 * 19 17 15 40 40 H 1.08999 * 109.47030 * 180.02562 * 19 17 15 41 41 H 1.09000 * 109.47260 * 300.00118 * 19 17 15 42 42 H 0.96995 * 120.00058 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.78800 * 77.11225 * 28 8 7 44 44 H 1.09002 * 110.79291 * 313.64232 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0566 0.0000 4 7 3.6111 0.6451 -0.0066 5 6 4.7795 1.5287 -0.0150 6 6 3.6417 -0.7006 -0.0043 7 6 2.3360 -1.1428 0.0042 8 6 1.8881 -2.5488 0.0099 9 7 0.6613 -2.9522 0.0174 10 8 0.5465 -4.3614 0.0290 11 6 1.8162 -4.9057 -0.3846 12 1 1.8340 -5.0801 -1.4604 13 6 2.1317 -6.1715 0.3697 14 8 1.3569 -6.5897 1.2037 15 7 3.2750 -6.8392 0.1172 16 6 4.2112 -6.3340 -0.8900 17 6 3.5820 -8.0695 0.8509 18 1 2.7758 -8.2854 1.5519 19 6 3.7235 -9.2300 -0.1362 20 6 4.8731 -7.8941 1.6081 21 1 5.4110 -6.9593 1.5492 22 6 5.3671 -8.9263 2.3770 23 7 6.4936 -8.7730 3.0383 24 14 4.4365 -10.5428 2.4796 25 1 4.9035 -11.4520 1.4024 26 1 4.6835 -11.1732 3.8013 27 1 2.9826 -10.2881 2.3167 28 6 2.7896 -3.7688 0.0079 29 1 -0.3634 0.0035 1.0276 30 1 -0.3634 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5109 32 1 5.0633 1.7460 -1.0448 33 1 4.5355 2.4587 0.4985 34 1 5.6091 1.0389 0.4948 35 1 4.5263 -1.3200 -0.0077 36 1 4.9241 -5.6586 -0.4172 37 1 4.7464 -7.1700 -1.3404 38 1 3.6595 -5.7975 -1.6621 39 1 4.5296 -9.0143 -0.8374 40 1 3.9515 -10.1455 0.4097 41 1 2.7897 -9.3570 -0.6839 42 1 6.8409 -9.4992 3.5795 43 1 3.2076 -3.9425 0.9995 44 1 3.5812 -3.6638 -0.7340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:17 Heat of formation + Delta-G solvation = 54.244706 kcal Electronic energy + Delta-G solvation = -27053.459298 eV Core-core repulsion = 23202.614072 eV Total energy + Delta-G solvation = -3850.845226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.37540 -41.60351 -39.96215 -37.32229 -35.39415 -34.88706 -34.04079 -32.97853 -31.32862 -30.90539 -30.11699 -27.77735 -27.15781 -26.65323 -25.74752 -23.31821 -22.87226 -21.21799 -20.49913 -20.01936 -19.05624 -18.35281 -17.90812 -17.52645 -16.99269 -16.68916 -16.63249 -16.34979 -15.82521 -15.22795 -15.00985 -14.92407 -14.47571 -14.45156 -14.24831 -14.11785 -13.96963 -13.92438 -13.76462 -13.56518 -13.24937 -13.15119 -13.09319 -13.04355 -13.00143 -12.80235 -12.53372 -12.05577 -12.00137 -11.61294 -11.40879 -11.36148 -11.24971 -10.79308 -10.57037 -10.31644 -9.47313 -9.31016 -8.34855 -6.38315 0.22183 0.93866 1.25567 1.36587 1.42937 1.44139 1.52136 1.66993 1.96151 2.27823 2.42623 2.93797 3.01247 3.30003 3.39141 3.56754 3.76639 3.84532 3.87158 4.11804 4.36909 4.41295 4.42756 4.45545 4.48833 4.52453 4.58500 4.61061 4.65618 4.73389 4.76524 4.79321 4.89278 4.97283 4.98287 5.02354 5.11293 5.30930 5.47124 5.53198 5.67394 5.92491 6.18017 6.35480 6.58127 6.60058 6.65586 7.15285 7.30555 8.80400 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.003107 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.109913 B = 9008.708557 C = 9899.225914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.103 3.897 3 N -0.328 5.328 4 N -0.360 5.360 5 C 0.087 3.913 6 C 0.130 3.870 7 C -0.232 4.232 8 C 0.191 3.809 9 N -0.328 5.328 10 O -0.214 6.214 11 C 0.035 3.965 12 H 0.143 0.857 13 C 0.504 3.496 14 O -0.589 6.589 15 N -0.583 5.583 16 C 0.071 3.929 17 C 0.230 3.770 18 H 0.024 0.976 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.056 0.944 22 C 0.028 3.972 23 N -0.935 5.935 24 Si 0.932 3.068 25 H -0.252 1.252 26 H -0.298 1.298 27 H -0.268 1.268 28 C -0.129 4.129 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.268 0.732 43 H 0.097 0.903 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 19.350 -13.544 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 N -0.151 5.151 4 N -0.138 5.138 5 C -0.052 4.052 6 C -0.025 4.025 7 C -0.246 4.246 8 C 0.002 3.998 9 N -0.074 5.074 10 O -0.229 6.229 11 C -0.027 4.027 12 H 0.161 0.839 13 C 0.291 3.709 14 O -0.469 6.469 15 N -0.314 5.314 16 C -0.070 4.070 17 C 0.127 3.873 18 H 0.042 0.958 19 C -0.213 4.213 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.172 4.172 23 N -0.574 5.574 24 Si 0.760 3.240 25 H -0.177 1.177 26 H -0.226 1.226 27 H -0.193 1.193 28 C -0.168 4.168 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.136 20.561 -12.955 24.328 hybrid contribution 0.519 -2.271 0.780 2.456 sum -0.617 18.290 -12.175 21.980 Atomic orbital electron populations 1.20317 0.85650 1.04022 1.03604 1.22765 0.97845 0.89495 0.96272 1.77169 0.87582 1.22896 1.27417 1.48743 1.06129 1.05492 1.53387 1.22420 0.82714 0.94489 1.05539 1.23575 0.98841 0.85257 0.94798 1.18004 0.93356 0.88303 1.24918 1.23507 0.91486 0.93594 0.91191 1.78503 1.19774 0.90305 1.18823 1.91340 1.30422 1.12837 1.88349 1.23572 0.85863 0.92367 1.00888 0.83950 1.20673 0.81600 0.85615 0.83048 1.90669 1.50209 1.69557 1.36479 1.47843 1.19153 1.25154 1.39241 1.22099 0.93371 1.01138 0.90407 1.19008 0.95255 0.82208 0.90825 0.95758 1.22328 1.01668 0.97509 0.99784 1.21311 1.05952 1.00734 1.27980 0.92597 1.25532 0.95292 1.01727 0.94620 1.69967 1.21490 1.34302 1.31678 0.86111 0.79877 0.80985 0.76990 1.17684 1.22563 1.19313 1.23025 1.00023 0.87043 1.06689 0.90249 0.89588 0.90004 0.88427 0.88847 0.85965 0.75301 0.91548 0.90064 0.88108 0.90252 0.94070 0.92721 0.92289 0.88488 0.82219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.03 71.23 0.71 -0.90 16 2 C 0.10 2.37 7.26 43.47 0.32 2.68 16 3 N -0.33 -7.13 12.51 -46.70 -0.58 -7.71 16 4 N -0.36 -5.20 3.99 -367.68 -1.47 -6.67 16 5 C 0.09 0.41 11.45 127.77 1.46 1.87 16 6 C 0.13 1.73 11.35 84.18 0.96 2.69 16 7 C -0.23 -4.88 6.12 -20.19 -0.12 -5.00 16 8 C 0.19 4.76 7.27 45.73 0.33 5.09 16 9 N -0.33 -10.46 10.71 -42.26 -0.45 -10.91 16 10 O -0.21 -8.06 11.82 -20.26 -0.24 -8.30 16 11 C 0.03 1.03 3.23 30.44 0.10 1.13 16 12 H 0.14 3.11 7.22 -2.39 -0.02 3.09 16 13 C 0.50 20.19 7.03 87.66 0.62 20.81 16 14 O -0.59 -30.54 15.91 15.02 0.24 -30.30 16 15 N -0.58 -21.99 2.75 -826.79 -2.28 -24.27 16 16 C 0.07 1.79 8.48 127.77 1.08 2.87 16 17 C 0.23 10.73 2.23 44.24 0.10 10.83 16 18 H 0.02 1.33 5.96 -2.39 -0.01 1.32 16 19 C -0.16 -6.14 8.65 71.98 0.62 -5.52 16 20 C -0.52 -27.86 8.95 25.60 0.23 -27.63 16 21 H 0.06 3.17 7.89 -2.91 -0.02 3.15 16 22 C 0.03 1.54 5.45 84.65 0.46 2.00 16 23 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 24 Si 0.93 44.38 24.37 68.60 1.67 46.06 16 25 H -0.25 -10.89 6.87 99.48 0.68 -10.21 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.27 -12.90 6.53 99.48 0.65 -12.25 16 28 C -0.13 -2.86 5.49 30.75 0.17 -2.70 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.08 1.89 6.70 -2.39 -0.02 1.87 16 32 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.03 6.43 -2.39 -0.02 2.01 16 38 H 0.10 1.59 6.14 -2.38 -0.01 1.57 16 39 H 0.08 2.76 6.66 -2.39 -0.02 2.75 16 40 H 0.04 1.71 3.27 -2.39 -0.01 1.71 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.10 2.53 7.91 -2.39 -0.02 2.52 16 44 H 0.16 1.86 7.67 -2.39 -0.02 1.84 16 Total: -1.00 -86.21 358.72 5.17 -81.04 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.95 Total: 7.95 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.04 Total: 8.21 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.48 Total: -104.66 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: 0.00 Total: -38.60 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.06 kcal Total: -86.21 5.17 -81.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.283 kcal (2) G-P(sol) polarization free energy of solvation -86.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds