Wall clock time and date at job start Tue Mar 31 2020 13:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32221 * 120.51072 * 2 1 4 4 C 1.31902 * 121.13914 * 180.31198 * 3 2 1 5 5 N 1.31759 * 122.19897 * 359.70085 * 4 3 2 6 6 C 1.32737 * 120.87126 * 359.97438 * 5 4 3 7 7 O 1.35275 * 120.61889 * 179.97438 * 6 5 4 8 8 C 1.39758 * 120.50948 * 179.73464 * 2 1 3 9 9 C 1.47543 * 120.98130 * 359.97438 * 8 2 1 10 10 O 1.21592 * 119.99973 * 269.72194 * 9 8 2 11 11 N 1.34773 * 120.00047 * 89.71686 * 9 8 2 12 12 C 1.46504 * 120.00223 * 179.72637 * 11 9 8 13 13 H 1.09006 * 109.45424 * 35.27824 * 12 11 9 14 14 C 1.53033 * 109.46171 * 275.30730 * 12 11 9 15 15 C 1.53194 * 109.31055 * 301.34229 * 14 12 11 16 16 N 1.46925 * 108.77745 * 305.36389 * 15 14 12 17 17 C 1.36934 * 120.63369 * 233.63134 * 16 15 14 18 18 H 1.08005 * 119.99578 * 27.67617 * 17 16 15 19 19 C 1.38808 * 120.00033 * 207.67724 * 17 16 15 20 20 N 1.31612 * 120.00414 * 17.35069 * 19 17 16 21 21 Si 1.86807 * 119.99797 * 197.35232 * 19 17 16 22 22 H 1.48497 * 109.47426 * 89.99980 * 21 19 17 23 23 H 1.48504 * 109.46953 * 209.99765 * 21 19 17 24 24 H 1.48502 * 109.46984 * 329.99560 * 21 19 17 25 25 C 1.46928 * 118.73697 * 53.60864 * 16 15 14 26 26 C 1.53040 * 109.45983 * 155.24917 * 12 11 9 27 27 H 1.09000 * 109.49270 * 178.61081 * 26 12 11 28 28 C 1.52996 * 109.49785 * 298.70491 * 26 12 11 29 29 H 1.09002 * 109.46769 * 270.26434 * 1 2 3 30 30 H 1.08990 * 109.47159 * 30.26157 * 1 2 3 31 31 H 1.08991 * 109.47212 * 150.26893 * 1 2 3 32 32 H 1.08008 * 118.89849 * 179.67692 * 4 3 2 33 33 H 0.96696 * 114.00648 * 270.03171 * 7 6 5 34 34 H 0.97005 * 119.99723 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.49827 * 61.28983 * 14 12 11 36 36 H 1.08997 * 109.50269 * 181.38996 * 14 12 11 37 37 H 1.09000 * 109.58695 * 65.15742 * 15 14 12 38 38 H 1.09003 * 109.58701 * 185.57821 * 15 14 12 39 39 H 0.96997 * 120.00590 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.58450 * 66.17952 * 25 16 15 41 41 H 1.08998 * 109.58559 * 186.60551 * 25 16 15 42 42 H 1.09007 * 109.47397 * 60.00127 * 28 26 12 43 43 H 1.08999 * 109.47230 * 180.02562 * 28 26 12 44 44 H 1.08999 * 109.47442 * 300.00225 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 -0.0061 5 7 4.2115 0.0464 -0.0067 6 6 3.6234 -1.1435 -0.0006 7 8 4.3618 -2.2770 -0.0017 8 6 2.2165 -1.2041 0.0056 9 6 1.5123 -2.5006 0.0121 10 8 1.2270 -3.0321 1.0679 11 7 1.1852 -3.0956 -1.1520 12 6 0.4912 -4.3859 -1.1455 13 1 -0.1978 -4.4233 -0.3017 14 6 1.5159 -5.5153 -1.0175 15 6 2.5030 -5.4386 -2.1865 16 7 1.7465 -5.4502 -3.4460 17 6 2.0340 -6.3641 -4.4243 18 1 2.4601 -7.3210 -4.1610 19 6 1.7779 -6.0607 -5.7544 20 7 1.5890 -4.8105 -6.1197 21 14 1.7011 -7.4271 -7.0259 22 1 0.3073 -7.9286 -7.1302 23 1 2.1380 -6.9014 -8.3444 24 1 2.5973 -8.5373 -6.6142 25 6 0.6751 -4.4627 -3.6355 26 6 -0.2912 -4.5505 -2.4504 27 1 -0.7878 -5.5208 -2.4569 28 6 -1.3376 -3.4399 -2.5620 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8875 -0.5178 31 1 -0.3633 -0.8923 -0.5096 32 1 4.0088 2.1049 -0.0112 33 1 4.5721 -2.6086 -0.8854 34 1 1.4130 -2.6717 -1.9942 35 1 2.0570 -5.4108 -0.0771 36 1 1.0024 -6.4765 -1.0375 37 1 3.0818 -4.5176 -2.1163 38 1 3.1738 -6.2973 -2.1554 39 1 1.4097 -4.5985 -7.0491 40 1 1.1047 -3.4621 -3.6835 41 1 0.1397 -4.6775 -4.5603 42 1 -0.8400 -2.4700 -2.5569 43 1 -1.8949 -3.5578 -3.4913 44 1 -2.0236 -3.5007 -1.7171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942570536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:23 Heat of formation + Delta-G solvation = -8.902593 kcal Electronic energy + Delta-G solvation = -28403.825343 eV Core-core repulsion = 24550.241845 eV Total energy + Delta-G solvation = -3853.583498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57061 -39.75721 -37.92499 -37.65417 -34.42714 -34.30386 -32.56902 -32.03410 -31.67654 -29.68111 -28.82102 -26.13543 -25.65533 -24.89137 -23.04656 -22.33418 -21.24582 -20.85409 -19.07816 -18.70784 -18.26039 -17.86245 -16.86570 -16.50816 -15.66061 -15.21574 -14.91607 -14.72802 -14.41406 -14.16810 -13.90039 -13.70209 -13.54637 -13.33059 -13.11482 -13.05393 -12.84205 -12.72188 -12.27071 -12.11905 -11.54822 -11.43521 -11.32049 -11.13977 -11.03251 -10.78888 -10.57586 -10.45834 -10.25048 -10.05488 -9.96870 -9.81137 -9.68528 -9.54112 -9.51527 -8.80108 -8.56361 -6.79441 -5.90325 -3.32362 0.39558 0.67136 2.51355 3.03940 3.24865 3.31495 3.38671 3.39425 3.39889 3.72200 4.01575 4.40879 4.60784 4.73139 4.92960 5.06750 5.19102 5.21521 5.28185 5.33973 5.40991 5.46991 5.56630 5.64386 5.74032 5.95941 5.97208 6.04498 6.09265 6.22798 6.34765 6.42940 6.45970 6.52962 6.59858 6.68042 6.80241 6.86674 7.13987 7.17433 7.47772 7.61994 7.70884 7.74748 8.24742 8.33435 9.09942 9.72944 10.28584 11.18088 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.003953 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.743758 B = 7082.069471 C = 7365.921459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.226 3.774 3 N -0.527 5.527 4 C 0.333 3.667 5 N -0.542 5.542 6 C 0.401 3.599 7 O -0.467 6.467 8 C -0.247 4.247 9 C 0.576 3.424 10 O -0.529 6.529 11 N -0.701 5.701 12 C 0.159 3.841 13 H 0.076 0.924 14 C -0.147 4.147 15 C 0.150 3.850 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.178 3.822 26 C -0.128 4.128 27 H 0.080 0.920 28 C -0.140 4.140 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.205 0.795 33 H 0.416 0.584 34 H 0.403 0.597 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.012 0.988 38 H 0.054 0.946 39 H 0.254 0.746 40 H 0.014 0.986 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 9.823 9.291 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 N -0.244 5.244 4 C 0.045 3.955 5 N -0.267 5.267 6 C 0.214 3.786 7 O -0.276 6.276 8 C -0.257 4.257 9 C 0.358 3.642 10 O -0.405 6.405 11 N -0.352 5.352 12 C 0.056 3.944 13 H 0.094 0.906 14 C -0.187 4.187 15 C 0.023 3.977 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.052 3.948 26 C -0.149 4.149 27 H 0.099 0.901 28 C -0.198 4.198 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.222 0.778 33 H 0.277 0.723 34 H 0.240 0.760 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.814 10.276 10.436 14.758 hybrid contribution -0.018 -1.299 -1.566 2.034 sum -1.832 8.978 8.870 12.753 Atomic orbital electron populations 1.20919 0.86972 1.04738 1.04475 1.21796 0.97731 0.86017 0.86489 1.68284 1.10209 1.29379 1.16483 1.24953 0.86268 0.96128 0.88110 1.68061 1.42645 0.98696 1.17322 1.19392 0.85597 0.85982 0.87670 1.84649 1.72476 1.35757 1.34718 1.21827 0.95200 0.97112 1.11520 1.17501 0.78768 0.83220 0.84662 1.90804 1.53917 1.64778 1.30994 1.46213 1.58553 1.22604 1.07838 1.20982 0.93436 0.81455 0.98555 0.90632 1.22396 0.98807 0.98002 0.99499 1.20839 0.92449 0.98347 0.86018 1.44060 1.35340 1.37787 1.14179 1.19203 1.39107 0.94260 0.85712 0.91601 1.25002 1.01513 0.95822 0.97067 1.70000 1.52376 1.15937 1.16475 0.86298 0.77966 0.81609 0.80952 1.21406 1.21777 1.20417 1.20791 0.87905 0.90964 0.95159 1.22141 0.96956 0.99293 0.96481 0.90145 1.21735 0.98394 0.98471 1.01154 0.88827 0.88966 0.89712 0.77825 0.72252 0.76035 0.92341 0.91226 0.96976 0.92763 0.93590 0.96848 0.89016 0.93300 0.92481 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.85 36.01 0.35 -0.76 16 2 C 0.23 2.77 6.86 -81.86 -0.56 2.21 16 3 N -0.53 -6.21 10.36 -10.52 -0.11 -6.32 16 4 C 0.33 3.62 12.27 -92.09 -1.13 2.49 16 5 N -0.54 -7.06 10.45 -14.32 -0.15 -7.21 16 6 C 0.40 5.57 7.85 -16.19 -0.13 5.45 16 7 O -0.47 -6.25 13.10 -17.52 -0.23 -6.48 16 8 C -0.25 -3.42 5.67 -104.56 -0.59 -4.01 16 9 C 0.58 8.75 5.47 -12.47 -0.07 8.68 16 10 O -0.53 -9.76 16.77 5.29 0.09 -9.67 16 11 N -0.70 -10.16 3.59 -54.80 -0.20 -10.36 16 12 C 0.16 2.51 2.21 -67.89 -0.15 2.36 16 13 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 14 C -0.15 -2.48 5.77 -26.61 -0.15 -2.63 16 15 C 0.15 2.88 6.26 -3.71 -0.02 2.85 16 16 N -0.59 -13.35 2.99 -172.34 -0.52 -13.87 16 17 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 18 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 19 C 0.00 0.12 4.91 -17.44 -0.09 0.03 16 20 N -0.90 -24.44 11.19 55.49 0.62 -23.82 16 21 Si 0.90 20.74 29.59 -169.99 -5.03 15.72 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.18 3.68 4.30 -3.72 -0.02 3.67 16 26 C -0.13 -2.11 2.67 -90.52 -0.24 -2.35 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 28 C -0.14 -1.92 9.05 37.16 0.34 -1.59 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.85 7.18 -51.93 -0.37 0.48 16 32 H 0.21 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.42 4.00 9.06 45.56 0.41 4.42 16 34 H 0.40 5.85 6.71 -40.82 -0.27 5.58 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.01 0.23 7.74 -51.93 -0.40 -0.17 16 38 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 39 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.01 0.29 6.64 -51.93 -0.34 -0.06 16 41 H 0.09 2.21 6.04 -51.93 -0.31 1.90 16 42 H 0.05 0.63 7.54 -51.92 -0.39 0.24 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -31.24 359.75 -8.12 -39.37 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.42 Total: 7.47 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -2.60 Total: 9.75 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.35 Total: -61.58 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.14 Total: -16.15 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.24 -8.12 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942570536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.466 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds