Wall clock time and date at job start Tue Mar 31 2020 13:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32221 * 120.51072 * 2 1 4 4 C 1.31902 * 121.13914 * 180.31198 * 3 2 1 5 5 N 1.31759 * 122.19897 * 359.70085 * 4 3 2 6 6 C 1.32737 * 120.87126 * 359.97438 * 5 4 3 7 7 O 1.35275 * 120.61889 * 179.97438 * 6 5 4 8 8 C 1.39758 * 120.50948 * 179.73464 * 2 1 3 9 9 C 1.47543 * 120.98130 * 359.97438 * 8 2 1 10 10 O 1.21592 * 119.99973 * 269.72194 * 9 8 2 11 11 N 1.34773 * 120.00047 * 89.71686 * 9 8 2 12 12 C 1.46504 * 120.00223 * 179.72637 * 11 9 8 13 13 H 1.09006 * 109.45424 * 35.27824 * 12 11 9 14 14 C 1.53033 * 109.46171 * 275.30730 * 12 11 9 15 15 C 1.53194 * 109.31055 * 301.34229 * 14 12 11 16 16 N 1.46925 * 108.77745 * 305.36389 * 15 14 12 17 17 C 1.36934 * 120.63369 * 233.63134 * 16 15 14 18 18 H 1.08005 * 119.99578 * 27.67617 * 17 16 15 19 19 C 1.38808 * 120.00033 * 207.67724 * 17 16 15 20 20 N 1.31612 * 120.00414 * 17.35069 * 19 17 16 21 21 Si 1.86807 * 119.99797 * 197.35232 * 19 17 16 22 22 H 1.48497 * 109.47426 * 89.99980 * 21 19 17 23 23 H 1.48504 * 109.46953 * 209.99765 * 21 19 17 24 24 H 1.48502 * 109.46984 * 329.99560 * 21 19 17 25 25 C 1.46928 * 118.73697 * 53.60864 * 16 15 14 26 26 C 1.53040 * 109.45983 * 155.24917 * 12 11 9 27 27 H 1.09000 * 109.49270 * 178.61081 * 26 12 11 28 28 C 1.52996 * 109.49785 * 298.70491 * 26 12 11 29 29 H 1.09002 * 109.46769 * 270.26434 * 1 2 3 30 30 H 1.08990 * 109.47159 * 30.26157 * 1 2 3 31 31 H 1.08991 * 109.47212 * 150.26893 * 1 2 3 32 32 H 1.08008 * 118.89849 * 179.67692 * 4 3 2 33 33 H 0.96696 * 114.00648 * 270.03171 * 7 6 5 34 34 H 0.97005 * 119.99723 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.49827 * 61.28983 * 14 12 11 36 36 H 1.08997 * 109.50269 * 181.38996 * 14 12 11 37 37 H 1.09000 * 109.58695 * 65.15742 * 15 14 12 38 38 H 1.09003 * 109.58701 * 185.57821 * 15 14 12 39 39 H 0.96997 * 120.00590 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.58450 * 66.17952 * 25 16 15 41 41 H 1.08998 * 109.58559 * 186.60551 * 25 16 15 42 42 H 1.09007 * 109.47397 * 60.00127 * 28 26 12 43 43 H 1.08999 * 109.47230 * 180.02562 * 28 26 12 44 44 H 1.08999 * 109.47442 * 300.00225 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 -0.0061 5 7 4.2115 0.0464 -0.0067 6 6 3.6234 -1.1435 -0.0006 7 8 4.3618 -2.2770 -0.0017 8 6 2.2165 -1.2041 0.0056 9 6 1.5123 -2.5006 0.0121 10 8 1.2270 -3.0321 1.0679 11 7 1.1852 -3.0956 -1.1520 12 6 0.4912 -4.3859 -1.1455 13 1 -0.1978 -4.4233 -0.3017 14 6 1.5159 -5.5153 -1.0175 15 6 2.5030 -5.4386 -2.1865 16 7 1.7465 -5.4502 -3.4460 17 6 2.0340 -6.3641 -4.4243 18 1 2.4601 -7.3210 -4.1610 19 6 1.7779 -6.0607 -5.7544 20 7 1.5890 -4.8105 -6.1197 21 14 1.7011 -7.4271 -7.0259 22 1 0.3073 -7.9286 -7.1302 23 1 2.1380 -6.9014 -8.3444 24 1 2.5973 -8.5373 -6.6142 25 6 0.6751 -4.4627 -3.6355 26 6 -0.2912 -4.5505 -2.4504 27 1 -0.7878 -5.5208 -2.4569 28 6 -1.3376 -3.4399 -2.5620 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8875 -0.5178 31 1 -0.3633 -0.8923 -0.5096 32 1 4.0088 2.1049 -0.0112 33 1 4.5721 -2.6086 -0.8854 34 1 1.4130 -2.6717 -1.9942 35 1 2.0570 -5.4108 -0.0771 36 1 1.0024 -6.4765 -1.0375 37 1 3.0818 -4.5176 -2.1163 38 1 3.1738 -6.2973 -2.1554 39 1 1.4097 -4.5985 -7.0491 40 1 1.1047 -3.4621 -3.6835 41 1 0.1397 -4.6775 -4.5603 42 1 -0.8400 -2.4700 -2.5569 43 1 -1.8949 -3.5578 -3.4913 44 1 -2.0236 -3.5007 -1.7171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942570536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:22 Heat of formation + Delta-G solvation = -31.730686 kcal Electronic energy + Delta-G solvation = -28404.815244 eV Core-core repulsion = 24550.241845 eV Total energy + Delta-G solvation = -3854.573399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.55498 -41.02563 -39.12373 -38.86630 -35.94641 -35.35060 -33.87478 -33.51820 -32.92099 -31.23224 -29.73558 -27.51958 -27.21898 -26.09844 -24.02123 -23.85368 -22.68969 -22.14983 -20.15524 -20.03939 -19.25646 -19.06559 -18.61265 -17.47937 -16.93423 -16.73960 -16.19890 -15.97789 -15.73753 -15.38095 -15.31954 -15.19380 -14.73446 -14.54491 -14.42546 -14.24480 -13.89295 -13.72482 -13.58728 -13.12815 -13.06083 -12.93413 -12.77423 -12.56474 -12.51910 -12.40115 -12.17533 -11.79017 -11.68905 -11.48765 -11.47481 -11.16874 -11.02438 -10.67503 -10.53394 -10.52493 -10.07129 -8.65272 -7.86853 -5.30087 -0.55221 -0.27606 1.32945 1.47393 1.50383 1.57103 2.01799 2.16867 2.44982 2.52043 2.89828 3.12876 3.28323 3.49313 3.69251 3.77201 3.84886 4.04327 4.08879 4.18291 4.23606 4.36214 4.54640 4.59714 4.63836 4.67437 4.75904 4.85613 4.89500 4.97809 5.04266 5.10864 5.14520 5.17084 5.32642 5.37759 5.50206 5.56598 5.65132 5.67213 5.78458 6.25290 6.39925 6.41154 6.83666 7.03638 7.17506 7.87775 8.37919 9.18507 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.003953 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.743758 B = 7082.069471 C = 7365.921459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.227 3.773 3 N -0.531 5.531 4 C 0.337 3.663 5 N -0.558 5.558 6 C 0.393 3.607 7 O -0.480 6.480 8 C -0.267 4.267 9 C 0.588 3.412 10 O -0.562 6.562 11 N -0.692 5.692 12 C 0.167 3.833 13 H 0.084 0.916 14 C -0.136 4.136 15 C 0.150 3.850 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.061 0.939 19 C -0.040 4.040 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.187 3.813 26 C -0.115 4.115 27 H 0.072 0.928 28 C -0.133 4.133 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.428 0.572 34 H 0.405 0.595 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.020 0.980 38 H 0.047 0.953 39 H 0.250 0.750 40 H 0.007 0.993 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 10.889 10.038 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 N -0.247 5.247 4 C 0.051 3.949 5 N -0.283 5.283 6 C 0.205 3.795 7 O -0.291 6.291 8 C -0.276 4.276 9 C 0.372 3.628 10 O -0.440 6.440 11 N -0.342 5.342 12 C 0.063 3.937 13 H 0.102 0.898 14 C -0.176 4.176 15 C 0.025 3.975 16 N -0.330 5.330 17 C -0.392 4.392 18 H 0.079 0.921 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.787 3.213 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.199 1.199 25 C 0.062 3.938 26 C -0.136 4.136 27 H 0.091 0.909 28 C -0.191 4.191 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.291 0.709 34 H 0.242 0.758 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.333 11.344 11.186 16.101 hybrid contribution 0.210 -1.588 -1.770 2.387 sum -2.123 9.756 9.416 13.724 Atomic orbital electron populations 1.21010 0.85320 1.05489 1.05193 1.22195 0.98878 0.85611 0.85189 1.68412 1.10596 1.28865 1.16862 1.25809 0.86225 0.96926 0.85930 1.68152 1.43019 0.98873 1.18279 1.19565 0.85775 0.86394 0.87722 1.84606 1.72542 1.35992 1.35974 1.21732 0.95216 0.96852 1.13844 1.17581 0.77926 0.83355 0.83957 1.90785 1.55361 1.65829 1.32047 1.46095 1.58193 1.22048 1.07883 1.20850 0.93155 0.81560 0.98170 0.89834 1.22261 0.98487 0.98572 0.98323 1.20900 0.92797 0.98354 0.85471 1.44267 1.36484 1.37646 1.14557 1.19440 1.38398 0.94710 0.86634 0.92118 1.25590 1.02049 0.97459 0.98554 1.70120 1.53649 1.17256 1.16325 0.85419 0.77765 0.79526 0.78623 1.21348 1.22320 1.19852 1.20612 0.87850 0.89994 0.95388 1.21937 0.96640 1.00164 0.94840 0.90916 1.21683 0.97860 0.97617 1.01964 0.87992 0.87168 0.89945 0.73976 0.70859 0.75849 0.92014 0.91332 0.96240 0.93459 0.94119 0.97490 0.92566 0.92413 0.92787 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.85 71.24 0.70 -1.25 16 2 C 0.23 5.16 6.86 42.87 0.29 5.46 16 3 N -0.53 -11.30 10.36 -187.20 -1.94 -13.23 16 4 C 0.34 6.55 12.27 180.86 2.22 8.77 16 5 N -0.56 -13.71 10.45 -312.05 -3.26 -16.97 16 6 C 0.39 10.57 7.85 85.19 0.67 11.24 16 7 O -0.48 -12.64 13.10 -85.60 -1.12 -13.76 16 8 C -0.27 -7.07 5.67 -19.82 -0.11 -7.18 16 9 C 0.59 17.20 5.47 86.70 0.47 17.67 16 10 O -0.56 -20.14 16.77 -4.00 -0.07 -20.21 16 11 N -0.69 -19.24 3.59 -445.56 -1.60 -20.84 16 12 C 0.17 5.02 2.21 45.02 0.10 5.12 16 13 H 0.08 2.48 7.58 -2.38 -0.02 2.47 16 14 C -0.14 -4.48 5.77 30.67 0.18 -4.31 16 15 C 0.15 5.73 6.26 86.36 0.54 6.27 16 16 N -0.61 -27.53 2.99 -699.15 -2.09 -29.62 16 17 C -0.26 -13.53 9.58 84.03 0.81 -12.73 16 18 H 0.06 3.14 7.89 -2.91 -0.02 3.12 16 19 C -0.04 -2.13 4.91 84.86 0.42 -1.71 16 20 N -0.93 -50.96 11.19 21.65 0.24 -50.72 16 21 Si 0.96 43.00 29.59 68.60 2.03 45.03 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.19 7.79 4.30 86.35 0.37 8.16 16 26 C -0.12 -3.69 2.67 -10.73 -0.03 -3.72 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 C -0.13 -3.43 9.05 71.98 0.65 -2.78 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.47 7.18 -2.39 -0.02 1.45 16 32 H 0.24 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.43 8.14 9.06 -74.06 -0.67 7.47 16 34 H 0.40 11.34 6.71 -92.70 -0.62 10.72 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.02 0.72 7.74 -2.39 -0.02 0.70 16 38 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 39 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 40 H 0.01 0.30 6.64 -2.39 -0.02 0.29 16 41 H 0.06 2.76 6.04 -2.39 -0.01 2.75 16 42 H 0.06 1.38 7.54 -2.38 -0.02 1.36 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -66.65 359.75 -0.78 -67.43 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.25 Total: 23.89 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 7.28 Total: 29.00 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -8.65 Total: -131.38 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.19 Total: -33.97 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -66.65 -0.78 -67.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942570536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.702 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds