Wall clock time and date at job start Tue Mar 31 2020 13:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32214 * 120.50854 * 2 1 4 4 C 1.31911 * 121.13868 * 180.26591 * 3 2 1 5 5 N 1.31753 * 122.19650 * 359.72788 * 4 3 2 6 6 C 1.32743 * 120.87273 * 0.02562 * 5 4 3 7 7 O 1.35271 * 120.61673 * 180.02562 * 6 5 4 8 8 C 1.39766 * 120.50541 * 179.74360 * 2 1 3 9 9 C 1.47533 * 120.98285 * 0.02562 * 8 2 1 10 10 O 1.21595 * 119.99614 * 269.71995 * 9 8 2 11 11 N 1.34770 * 119.99888 * 89.71963 * 9 8 2 12 12 C 1.46506 * 119.99874 * 180.27546 * 11 9 8 13 13 H 1.08999 * 109.46055 * 34.74820 * 12 11 9 14 14 C 1.53043 * 109.46158 * 274.79513 * 12 11 9 15 15 C 1.53184 * 109.31516 * 178.61401 * 14 12 11 16 16 N 1.46924 * 108.77751 * 54.63500 * 15 14 12 17 17 C 1.36931 * 120.63537 * 126.41225 * 16 15 14 18 18 H 1.08003 * 120.00173 * 207.66078 * 17 16 15 19 19 C 1.38814 * 119.99785 * 27.66154 * 17 16 15 20 20 N 1.31618 * 120.00318 * 17.37477 * 19 17 16 21 21 Si 1.86806 * 120.00079 * 197.37815 * 19 17 16 22 22 H 1.48506 * 109.46704 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47060 * 119.99666 * 21 19 17 24 24 H 1.48498 * 109.46972 * 239.99854 * 21 19 17 25 25 C 1.46929 * 118.73695 * 306.39170 * 16 15 14 26 26 C 1.53035 * 109.45952 * 154.72527 * 12 11 9 27 27 H 1.08998 * 109.49758 * 61.44001 * 26 12 11 28 28 C 1.52994 * 109.49966 * 301.36938 * 26 12 11 29 29 H 1.08997 * 109.46894 * 270.26046 * 1 2 3 30 30 H 1.09002 * 109.46998 * 30.26177 * 1 2 3 31 31 H 1.08997 * 109.47303 * 150.25500 * 1 2 3 32 32 H 1.08000 * 118.89964 * 179.70561 * 4 3 2 33 33 H 0.96699 * 114.00427 * 269.98059 * 7 6 5 34 34 H 0.97001 * 120.00094 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.49662 * 298.56627 * 14 12 11 36 36 H 1.08999 * 109.49750 * 58.66104 * 14 12 11 37 37 H 1.09001 * 109.58483 * 294.84671 * 15 14 12 38 38 H 1.09003 * 109.59010 * 174.42016 * 15 14 12 39 39 H 0.96993 * 120.00209 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.58795 * 293.81969 * 25 16 15 41 41 H 1.09002 * 109.59035 * 173.39312 * 25 16 15 42 42 H 1.09003 * 109.47202 * 59.99752 * 28 26 12 43 43 H 1.09001 * 109.47286 * 180.02562 * 28 26 12 44 44 H 1.09004 * 109.47294 * 300.00248 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1536 -0.0052 5 7 4.2115 0.0465 -0.0054 6 6 3.6234 -1.1435 -0.0007 7 8 4.3617 -2.2770 -0.0004 8 6 2.2165 -1.2042 0.0054 9 6 1.5123 -2.5006 0.0106 10 8 1.2262 -3.0327 1.0659 11 7 1.1861 -3.0949 -1.1541 12 6 0.4814 -4.3794 -1.1489 13 1 -0.2053 -4.4134 -0.3031 14 6 1.4970 -5.5177 -1.0266 15 6 0.7546 -6.8570 -0.9867 16 7 -0.1169 -6.9500 -2.1659 17 6 -0.0433 -8.0300 -3.0044 18 1 -0.3119 -7.9249 -4.0452 19 6 0.3764 -9.2600 -2.5167 20 7 0.3757 -9.4892 -1.2206 21 14 0.9425 -10.5902 -3.6999 22 1 0.8479 -10.0858 -5.0935 23 1 2.3504 -10.9538 -3.3990 24 1 0.0784 -11.7883 -3.5478 25 6 -1.0692 -5.8623 -2.4280 26 6 -0.3063 -4.5340 -2.4518 27 1 0.3824 -4.5253 -3.2966 28 6 -1.2980 -3.3771 -2.5894 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3634 -0.8922 -0.5098 32 1 4.0087 2.1048 -0.0099 33 1 4.5734 -2.6088 -0.8837 34 1 1.4146 -2.6705 -1.9959 35 1 2.1688 -5.4996 -1.8848 36 1 2.0736 -5.3938 -0.1100 37 1 0.1510 -6.9132 -0.0808 38 1 1.4752 -7.6748 -0.9995 39 1 0.6686 -10.3487 -0.8799 40 1 -1.8216 -5.8374 -1.6397 41 1 -1.5521 -6.0237 -3.3919 42 1 -0.7545 -2.4324 -2.6036 43 1 -1.8591 -3.4880 -3.5173 44 1 -1.9873 -3.3870 -1.7450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942570538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:29 Heat of formation + Delta-G solvation = -9.590526 kcal Electronic energy + Delta-G solvation = -27730.042241 eV Core-core repulsion = 23876.428912 eV Total energy + Delta-G solvation = -3853.613329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70783 -39.70021 -38.08948 -37.67288 -34.65069 -34.52357 -32.85534 -32.15652 -31.22141 -29.92434 -28.95221 -26.11791 -25.74486 -24.64040 -23.18609 -22.34868 -21.08950 -20.66375 -19.54943 -19.24247 -18.39154 -17.68381 -16.77738 -16.63881 -16.11732 -15.36834 -14.90438 -14.63113 -14.46354 -14.32151 -13.92523 -13.72502 -13.57509 -13.34336 -13.21127 -12.97919 -12.86705 -12.72399 -12.39813 -12.17145 -11.57318 -11.56502 -11.37182 -11.13353 -10.88638 -10.72350 -10.70031 -10.43900 -10.26864 -10.12047 -10.05633 -9.84568 -9.80721 -9.68294 -9.53462 -8.84005 -8.47817 -6.73737 -5.82543 -3.25486 0.24512 0.52067 2.41427 2.89289 3.09534 3.21904 3.34723 3.42634 3.44414 3.58470 3.87137 4.45464 4.45886 4.59057 4.79162 4.93369 5.05630 5.17685 5.23029 5.28463 5.34958 5.42015 5.52834 5.53758 5.79568 5.83799 5.88310 6.02062 6.16788 6.17641 6.24169 6.36448 6.43165 6.52645 6.60800 6.71520 6.80765 6.89154 6.97822 7.31437 7.48149 7.60143 7.63824 7.76084 8.14702 8.40354 9.16555 9.79884 10.35926 11.25931 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.003252 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.600212 B = 8606.927690 C = 9264.547428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.226 3.774 3 N -0.527 5.527 4 C 0.333 3.667 5 N -0.542 5.542 6 C 0.399 3.601 7 O -0.465 6.465 8 C -0.248 4.248 9 C 0.573 3.427 10 O -0.516 6.516 11 N -0.712 5.712 12 C 0.156 3.844 13 H 0.084 0.916 14 C -0.148 4.148 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.155 3.845 26 C -0.115 4.115 27 H 0.071 0.929 28 C -0.143 4.143 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.206 0.794 33 H 0.413 0.587 34 H 0.394 0.606 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.090 0.910 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 20.844 -1.682 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 N -0.243 5.243 4 C 0.045 3.955 5 N -0.268 5.268 6 C 0.211 3.789 7 O -0.273 6.273 8 C -0.257 4.257 9 C 0.355 3.645 10 O -0.391 6.391 11 N -0.362 5.362 12 C 0.054 3.946 13 H 0.103 0.897 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.028 3.972 26 C -0.135 4.135 27 H 0.090 0.910 28 C -0.201 4.201 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.222 0.778 33 H 0.274 0.726 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.029 21.068 -0.245 21.286 hybrid contribution 0.381 -1.366 -1.302 1.925 sum 3.411 19.702 -1.547 20.055 Atomic orbital electron populations 1.20937 0.86864 1.04659 1.04740 1.21827 0.97781 0.85976 0.86409 1.68302 1.10198 1.29379 1.16409 1.24972 0.86266 0.96127 0.88092 1.68067 1.42641 0.98695 1.17356 1.19413 0.85605 0.85970 0.87932 1.84707 1.72462 1.35760 1.34364 1.21879 0.95165 0.97175 1.11484 1.17517 0.78976 0.83167 0.84792 1.90862 1.53044 1.64289 1.30893 1.46340 1.59081 1.23495 1.07325 1.21166 0.93841 0.80714 0.98925 0.89743 1.22584 0.98210 0.97343 1.00643 1.20766 0.93332 0.92738 0.88466 1.44118 1.38894 1.19749 1.28702 1.19202 1.41847 0.87012 0.90439 0.91575 1.25053 1.01873 0.96924 0.95704 1.70039 1.49927 1.23112 1.11307 0.86247 0.78290 0.81823 0.80523 1.20267 1.21545 1.21712 1.20890 0.91162 0.86193 0.99000 1.21983 0.97645 0.97541 0.96380 0.91029 1.21790 0.99168 0.97379 1.01751 0.88644 0.88978 0.89681 0.77778 0.72612 0.77218 0.92614 0.92593 0.96093 0.89140 0.93578 0.96139 0.92332 0.93588 0.92598 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.85 36.01 0.35 -0.62 16 2 C 0.23 2.42 6.86 -81.85 -0.56 1.85 16 3 N -0.53 -5.36 10.36 -10.52 -0.11 -5.47 16 4 C 0.33 3.06 12.27 -92.09 -1.13 1.93 16 5 N -0.54 -6.11 10.45 -14.32 -0.15 -6.26 16 6 C 0.40 4.81 7.85 -16.18 -0.13 4.69 16 7 O -0.46 -5.41 13.10 -17.51 -0.23 -5.64 16 8 C -0.25 -3.02 5.67 -104.56 -0.59 -3.61 16 9 C 0.57 8.14 5.48 -12.47 -0.07 8.08 16 10 O -0.52 -9.70 16.77 5.28 0.09 -9.61 16 11 N -0.71 -8.90 4.36 -54.81 -0.24 -9.14 16 12 C 0.16 2.48 1.88 -67.89 -0.13 2.35 16 13 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 14 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 15 C 0.17 4.06 5.31 -3.72 -0.02 4.04 16 16 N -0.59 -14.19 2.99 -172.32 -0.52 -14.70 16 17 C -0.26 -6.77 9.59 -15.06 -0.14 -6.91 16 18 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 21 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.15 3.00 5.80 -3.71 -0.02 2.98 16 26 C -0.11 -1.72 2.46 -90.50 -0.22 -1.94 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 C -0.14 -1.67 9.03 37.15 0.34 -1.33 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.74 7.18 -51.93 -0.37 0.36 16 32 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.41 2.76 9.06 45.56 0.41 3.17 16 34 H 0.39 3.87 8.29 -40.82 -0.34 3.53 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 42 H 0.05 0.45 7.36 -51.93 -0.38 0.06 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -33.74 363.69 -8.22 -41.96 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.58 Total: 3.77 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -2.56 Total: 8.59 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.39 Total: -60.75 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.14 Total: -15.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.74 -8.22 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942570538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.373 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds