Wall clock time and date at job start Tue Mar 31 2020 13:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32214 * 120.50854 * 2 1 4 4 C 1.31911 * 121.13868 * 180.26591 * 3 2 1 5 5 N 1.31753 * 122.19650 * 359.72788 * 4 3 2 6 6 C 1.32743 * 120.87273 * 0.02562 * 5 4 3 7 7 O 1.35271 * 120.61673 * 180.02562 * 6 5 4 8 8 C 1.39766 * 120.50541 * 179.74360 * 2 1 3 9 9 C 1.47533 * 120.98285 * 0.02562 * 8 2 1 10 10 O 1.21595 * 119.99614 * 269.71995 * 9 8 2 11 11 N 1.34770 * 119.99888 * 89.71963 * 9 8 2 12 12 C 1.46506 * 119.99874 * 180.27546 * 11 9 8 13 13 H 1.08999 * 109.46055 * 34.74820 * 12 11 9 14 14 C 1.53043 * 109.46158 * 274.79513 * 12 11 9 15 15 C 1.53184 * 109.31516 * 178.61401 * 14 12 11 16 16 N 1.46924 * 108.77751 * 54.63500 * 15 14 12 17 17 C 1.36931 * 120.63537 * 126.41225 * 16 15 14 18 18 H 1.08003 * 120.00173 * 207.66078 * 17 16 15 19 19 C 1.38814 * 119.99785 * 27.66154 * 17 16 15 20 20 N 1.31618 * 120.00318 * 17.37477 * 19 17 16 21 21 Si 1.86806 * 120.00079 * 197.37815 * 19 17 16 22 22 H 1.48506 * 109.46704 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47060 * 119.99666 * 21 19 17 24 24 H 1.48498 * 109.46972 * 239.99854 * 21 19 17 25 25 C 1.46929 * 118.73695 * 306.39170 * 16 15 14 26 26 C 1.53035 * 109.45952 * 154.72527 * 12 11 9 27 27 H 1.08998 * 109.49758 * 61.44001 * 26 12 11 28 28 C 1.52994 * 109.49966 * 301.36938 * 26 12 11 29 29 H 1.08997 * 109.46894 * 270.26046 * 1 2 3 30 30 H 1.09002 * 109.46998 * 30.26177 * 1 2 3 31 31 H 1.08997 * 109.47303 * 150.25500 * 1 2 3 32 32 H 1.08000 * 118.89964 * 179.70561 * 4 3 2 33 33 H 0.96699 * 114.00427 * 269.98059 * 7 6 5 34 34 H 0.97001 * 120.00094 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.49662 * 298.56627 * 14 12 11 36 36 H 1.08999 * 109.49750 * 58.66104 * 14 12 11 37 37 H 1.09001 * 109.58483 * 294.84671 * 15 14 12 38 38 H 1.09003 * 109.59010 * 174.42016 * 15 14 12 39 39 H 0.96993 * 120.00209 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.58795 * 293.81969 * 25 16 15 41 41 H 1.09002 * 109.59035 * 173.39312 * 25 16 15 42 42 H 1.09003 * 109.47202 * 59.99752 * 28 26 12 43 43 H 1.09001 * 109.47286 * 180.02562 * 28 26 12 44 44 H 1.09004 * 109.47294 * 300.00248 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1536 -0.0052 5 7 4.2115 0.0465 -0.0054 6 6 3.6234 -1.1435 -0.0007 7 8 4.3617 -2.2770 -0.0004 8 6 2.2165 -1.2042 0.0054 9 6 1.5123 -2.5006 0.0106 10 8 1.2262 -3.0327 1.0659 11 7 1.1861 -3.0949 -1.1541 12 6 0.4814 -4.3794 -1.1489 13 1 -0.2053 -4.4134 -0.3031 14 6 1.4970 -5.5177 -1.0266 15 6 0.7546 -6.8570 -0.9867 16 7 -0.1169 -6.9500 -2.1659 17 6 -0.0433 -8.0300 -3.0044 18 1 -0.3119 -7.9249 -4.0452 19 6 0.3764 -9.2600 -2.5167 20 7 0.3757 -9.4892 -1.2206 21 14 0.9425 -10.5902 -3.6999 22 1 0.8479 -10.0858 -5.0935 23 1 2.3504 -10.9538 -3.3990 24 1 0.0784 -11.7883 -3.5478 25 6 -1.0692 -5.8623 -2.4280 26 6 -0.3063 -4.5340 -2.4518 27 1 0.3824 -4.5253 -3.2966 28 6 -1.2980 -3.3771 -2.5894 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5179 31 1 -0.3634 -0.8922 -0.5098 32 1 4.0087 2.1048 -0.0099 33 1 4.5734 -2.6088 -0.8837 34 1 1.4146 -2.6705 -1.9959 35 1 2.1688 -5.4996 -1.8848 36 1 2.0736 -5.3938 -0.1100 37 1 0.1510 -6.9132 -0.0808 38 1 1.4752 -7.6748 -0.9995 39 1 0.6686 -10.3487 -0.8799 40 1 -1.8216 -5.8374 -1.6397 41 1 -1.5521 -6.0237 -3.3919 42 1 -0.7545 -2.4324 -2.6036 43 1 -1.8591 -3.4880 -3.5173 44 1 -1.9873 -3.3870 -1.7450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942570538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:28 Heat of formation + Delta-G solvation = -36.050892 kcal Electronic energy + Delta-G solvation = -27731.189648 eV Core-core repulsion = 23876.428912 eV Total energy + Delta-G solvation = -3854.760737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56413 -40.91579 -39.17852 -38.89427 -36.23507 -35.36586 -34.25819 -33.13114 -32.89819 -31.50639 -29.76383 -27.41131 -27.22816 -25.94710 -24.04203 -23.82627 -22.65216 -21.86612 -21.02457 -20.06088 -19.23379 -18.96681 -18.46846 -17.65776 -17.23965 -16.76919 -16.19610 -15.81154 -15.69043 -15.56452 -15.31865 -15.16333 -14.71014 -14.52260 -14.41916 -14.25078 -13.90633 -13.73471 -13.58530 -13.13248 -13.05711 -13.00773 -12.71404 -12.63182 -12.48802 -12.28132 -12.07149 -12.02526 -11.65303 -11.58714 -11.49640 -11.35596 -10.99793 -10.69042 -10.58304 -10.53241 -10.10163 -8.71554 -7.87593 -5.33346 -0.56589 -0.28547 1.30098 1.46861 1.48989 1.59277 1.94160 2.16017 2.41775 2.51401 2.88736 3.11637 3.28173 3.47579 3.66128 3.75917 3.76539 4.02312 4.08413 4.16508 4.21353 4.38383 4.53284 4.61068 4.64720 4.72156 4.73030 4.86875 4.89567 4.90146 5.03494 5.11018 5.13624 5.17327 5.30874 5.40416 5.46401 5.53123 5.63866 5.65119 5.70623 6.30019 6.37961 6.40184 6.83265 7.06064 7.13255 7.84469 8.36550 9.19355 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.003252 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.600212 B = 8606.927690 C = 9264.547428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.231 3.769 3 N -0.531 5.531 4 C 0.340 3.660 5 N -0.557 5.557 6 C 0.396 3.604 7 O -0.482 6.482 8 C -0.265 4.265 9 C 0.583 3.417 10 O -0.567 6.567 11 N -0.692 5.692 12 C 0.170 3.830 13 H 0.061 0.939 14 C -0.132 4.132 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.074 0.926 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.293 1.293 24 H -0.295 1.295 25 C 0.149 3.851 26 C -0.099 4.099 27 H 0.081 0.919 28 C -0.136 4.136 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.430 0.570 34 H 0.413 0.587 35 H 0.065 0.935 36 H 0.046 0.954 37 H -0.012 1.012 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.010 0.990 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 23.803 -3.775 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 N -0.247 5.247 4 C 0.053 3.947 5 N -0.282 5.282 6 C 0.208 3.792 7 O -0.294 6.294 8 C -0.275 4.275 9 C 0.367 3.633 10 O -0.445 6.445 11 N -0.342 5.342 12 C 0.065 3.935 13 H 0.079 0.921 14 C -0.172 4.172 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.220 1.220 24 H -0.222 1.222 25 C 0.023 3.977 26 C -0.120 4.120 27 H 0.100 0.900 28 C -0.194 4.194 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.261 0.739 33 H 0.295 0.705 34 H 0.250 0.750 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.264 24.084 -2.409 24.423 hybrid contribution 0.300 -2.218 -0.627 2.325 sum 3.564 21.866 -3.037 22.361 Atomic orbital electron populations 1.21021 0.85477 1.05668 1.05016 1.22148 0.98735 0.85553 0.85104 1.68431 1.10626 1.28765 1.16864 1.25822 0.86161 0.96931 0.85739 1.68174 1.42912 0.98811 1.18324 1.19538 0.85604 0.86383 0.87653 1.84660 1.72496 1.36005 1.36192 1.21658 0.95198 0.96356 1.14247 1.17746 0.77944 0.83508 0.84057 1.90846 1.55075 1.65830 1.32743 1.45965 1.58180 1.22013 1.08063 1.20758 0.92775 0.81143 0.98795 0.92081 1.22319 0.98355 0.95978 1.00548 1.20461 0.92403 0.94183 0.87358 1.44361 1.40155 1.20453 1.28244 1.19585 1.40554 0.87667 0.91111 0.90836 1.25836 1.02742 0.99245 0.97047 1.70209 1.51629 1.23342 1.13220 0.85218 0.77125 0.78885 0.79278 1.18561 1.21960 1.22239 1.21095 0.90831 0.86955 0.98811 1.21768 0.98008 0.96398 0.95796 0.90043 1.21744 0.98486 0.96766 1.02359 0.88668 0.86796 0.89768 0.73948 0.70527 0.74952 0.91595 0.93545 0.99419 0.92672 0.94229 0.97161 0.91639 0.90809 0.91164 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.85 71.24 0.70 -0.96 16 2 C 0.23 4.40 6.86 42.87 0.29 4.69 16 3 N -0.53 -9.26 10.36 -187.20 -1.94 -11.20 16 4 C 0.34 5.22 12.27 180.86 2.22 7.44 16 5 N -0.56 -11.32 10.45 -312.05 -3.26 -14.59 16 6 C 0.40 8.99 7.85 85.19 0.67 9.65 16 7 O -0.48 -10.80 13.10 -85.55 -1.12 -11.92 16 8 C -0.27 -6.05 5.67 -19.83 -0.11 -6.17 16 9 C 0.58 16.09 5.48 86.70 0.47 16.56 16 10 O -0.57 -21.59 16.77 -4.01 -0.07 -21.65 16 11 N -0.69 -16.11 4.36 -445.57 -1.94 -18.05 16 12 C 0.17 5.27 1.88 45.02 0.08 5.36 16 13 H 0.06 2.25 7.57 -2.39 -0.02 2.23 16 14 C -0.13 -5.02 5.65 30.67 0.17 -4.85 16 15 C 0.18 8.98 5.31 86.36 0.46 9.44 16 16 N -0.61 -29.70 2.99 -699.09 -2.09 -31.79 16 17 C -0.26 -13.83 9.59 84.04 0.81 -13.02 16 18 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 19 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 20 N -0.94 -56.05 11.19 21.65 0.24 -55.81 16 21 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 C 0.15 5.70 5.80 86.36 0.50 6.21 16 26 C -0.10 -2.79 2.46 -10.72 -0.03 -2.81 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 C -0.14 -2.72 9.03 71.98 0.65 -2.07 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.23 7.18 -2.39 -0.02 1.22 16 32 H 0.24 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.43 5.26 9.06 -74.06 -0.67 4.59 16 34 H 0.41 6.81 8.29 -92.71 -0.77 6.04 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.05 3.09 6.04 -2.39 -0.01 3.07 16 39 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 42 H 0.07 1.10 7.36 -2.39 -0.02 1.08 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -76.31 363.69 -1.24 -77.55 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.40 Total: 14.22 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 7.31 Total: 26.91 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -8.99 Total: -131.43 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.19 Total: -33.58 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -76.31 -1.24 -77.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942570538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.495 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds