Wall clock time and date at job start Tue Mar 31 2020 13:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32220 * 120.50856 * 2 1 4 4 C 1.31902 * 121.14281 * 180.02562 * 3 2 1 5 5 N 1.31754 * 122.19909 * 359.97438 * 4 3 2 6 6 C 1.32746 * 120.86890 * 359.76624 * 5 4 3 7 7 O 1.35275 * 120.61952 * 180.26605 * 6 5 4 8 8 C 1.39765 * 120.51227 * 180.02562 * 2 1 3 9 9 C 1.47536 * 120.97938 * 359.95702 * 8 2 1 10 10 O 1.21578 * 119.99994 * 89.99928 * 9 8 2 11 11 N 1.34783 * 119.99734 * 269.99975 * 9 8 2 12 12 C 1.46499 * 119.99940 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.44764 * 35.03273 * 12 11 9 14 14 C 1.53040 * 109.45658 * 275.06910 * 12 11 9 15 15 C 1.53632 * 109.23932 * 178.48947 * 14 12 11 16 16 N 1.46930 * 108.54007 * 54.85582 * 15 14 12 17 17 C 1.36942 * 120.62812 * 126.37053 * 16 15 14 18 18 H 1.07992 * 119.99640 * 209.59851 * 17 16 15 19 19 C 1.38806 * 120.00017 * 29.59805 * 17 16 15 20 20 N 1.31618 * 120.00156 * 15.65779 * 19 17 16 21 21 Si 1.86801 * 119.99857 * 195.65668 * 19 17 16 22 22 H 1.48504 * 109.47072 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47076 * 300.00237 * 21 19 17 24 24 H 1.48497 * 109.47023 * 60.00155 * 21 19 17 25 25 C 1.46922 * 118.73926 * 306.09158 * 16 15 14 26 26 H 1.08999 * 109.58756 * 294.07579 * 25 16 15 27 27 C 1.52997 * 109.58771 * 173.79246 * 25 16 15 28 28 C 1.53034 * 109.45988 * 155.00036 * 12 11 9 29 29 H 1.08994 * 109.46911 * 269.97795 * 1 2 3 30 30 H 1.08996 * 109.46897 * 29.97798 * 1 2 3 31 31 H 1.08995 * 109.46749 * 149.98328 * 1 2 3 32 32 H 1.07997 * 118.89970 * 179.97438 * 4 3 2 33 33 H 0.96707 * 114.00076 * 270.22901 * 7 6 5 34 34 H 0.97000 * 119.99711 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.50002 * 298.56359 * 14 12 11 36 36 H 1.08992 * 109.50238 * 58.66569 * 14 12 11 37 37 H 1.08991 * 109.73950 * 295.11909 * 15 14 12 38 38 H 1.08999 * 109.66483 * 174.54359 * 15 14 12 39 39 H 0.97004 * 119.99842 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.47270 * 59.99953 * 27 25 16 41 41 H 1.08997 * 109.47484 * 180.02562 * 27 25 16 42 42 H 1.09002 * 109.47150 * 300.00357 * 27 25 16 43 43 H 1.09004 * 109.49990 * 61.43465 * 28 12 11 44 44 H 1.09005 * 109.52527 * 301.35214 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2116 0.0467 -0.0005 6 6 3.6235 -1.1434 0.0046 7 8 4.3619 -2.2768 0.0100 8 6 2.2166 -1.2041 -0.0005 9 6 1.5125 -2.5006 -0.0002 10 8 1.2216 -3.0347 -1.0529 11 7 1.1916 -3.0928 1.1673 12 6 0.4929 -4.3804 1.1677 13 1 0.8380 -4.9809 0.3259 14 6 -1.0136 -4.1429 1.0409 15 6 -1.7382 -5.4971 1.0037 16 7 -1.3472 -6.2690 2.1912 17 6 -2.2971 -6.7870 3.0306 18 1 -2.0773 -6.9170 4.0799 19 6 -3.5424 -7.1449 2.5327 20 7 -3.7178 -7.2824 1.2355 21 14 -4.9693 -7.4316 3.7037 22 1 -6.1802 -7.8010 2.9275 23 1 -4.6275 -8.5321 4.6404 24 1 -5.2343 -6.1902 4.4743 25 6 0.0823 -6.4798 2.4576 26 1 0.5120 -7.1033 1.6736 27 6 0.2554 -7.1680 3.8130 28 6 0.7863 -5.1193 2.4754 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5141 32 1 4.0086 2.1049 -0.0009 33 1 4.5799 -2.6084 -0.8719 34 1 1.4240 -2.6668 2.0072 35 1 -1.3638 -3.5635 1.8952 36 1 -1.2196 -3.5962 0.1208 37 1 -1.4540 -6.0422 0.1037 38 1 -2.8163 -5.3366 1.0111 39 1 -4.5880 -7.5329 0.8877 40 1 -0.2564 -8.1302 3.8000 41 1 1.3164 -7.3230 4.0089 42 1 -0.1704 -6.5406 4.5961 43 1 0.4192 -4.5307 3.3161 44 1 1.8615 -5.2674 2.5768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947638806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:35 Heat of formation + Delta-G solvation = -8.581453 kcal Electronic energy + Delta-G solvation = -27550.803008 eV Core-core repulsion = 23697.233435 eV Total energy + Delta-G solvation = -3853.569573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70192 -39.59504 -38.10015 -37.65498 -34.66399 -34.52337 -32.59309 -32.23160 -31.21591 -29.62009 -28.85009 -26.45497 -25.62762 -24.60105 -23.17674 -22.18572 -21.41575 -20.22472 -19.41301 -19.25480 -18.37462 -17.77670 -16.67718 -16.31700 -16.06826 -15.35942 -15.14027 -14.60089 -14.36167 -14.26392 -13.93668 -13.71273 -13.61896 -13.31914 -13.17212 -12.97851 -12.84229 -12.65371 -12.38051 -11.63244 -11.58775 -11.25369 -11.15200 -10.97210 -10.93904 -10.71674 -10.68045 -10.37384 -10.20834 -10.13064 -10.04999 -9.78296 -9.75644 -9.72331 -9.42701 -8.82112 -8.45431 -6.66387 -5.79476 -3.23721 0.23922 0.52128 2.40229 2.88327 3.06030 3.31548 3.37034 3.43326 3.43566 3.60755 3.87648 4.43754 4.47366 4.59839 4.81152 4.96924 5.22038 5.24938 5.33955 5.36143 5.39660 5.53465 5.58021 5.73137 5.87391 5.93659 6.12240 6.17215 6.29249 6.34044 6.38355 6.43618 6.47385 6.58898 6.72293 6.79440 6.93601 7.00233 7.07356 7.33124 7.51013 7.60169 7.65106 7.80673 8.14374 8.45031 9.20262 9.83624 10.40896 11.29226 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.003141 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.216518 B = 8913.472935 C = 9513.989051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.229 3.771 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.543 5.543 6 C 0.397 3.603 7 O -0.469 6.469 8 C -0.248 4.248 9 C 0.575 3.425 10 O -0.527 6.527 11 N -0.707 5.707 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.587 5.587 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.291 1.291 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.172 3.828 26 H 0.027 0.973 27 C -0.135 4.135 28 C -0.134 4.134 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.206 0.794 33 H 0.415 0.585 34 H 0.396 0.604 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.089 14.498 -1.364 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 N -0.242 5.242 4 C 0.045 3.955 5 N -0.269 5.269 6 C 0.210 3.790 7 O -0.278 6.278 8 C -0.257 4.257 9 C 0.358 3.642 10 O -0.404 6.404 11 N -0.356 5.356 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.187 4.187 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.217 1.217 23 H -0.209 1.209 24 H -0.211 1.211 25 C 0.064 3.936 26 H 0.045 0.955 27 C -0.193 4.193 28 C -0.174 4.174 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.222 0.778 33 H 0.276 0.724 34 H 0.230 0.770 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.155 14.829 -1.619 19.889 hybrid contribution -0.782 -0.731 0.454 1.163 sum 12.372 14.098 -1.166 18.793 Atomic orbital electron populations 1.20970 0.86686 1.05188 1.04638 1.21871 0.97883 0.85928 0.86045 1.68315 1.10166 1.29440 1.16303 1.24972 0.86296 0.96110 0.88073 1.68062 1.42671 0.98695 1.17424 1.19396 0.85557 0.85960 0.88133 1.84625 1.72470 1.35898 1.34790 1.21920 0.95065 0.97274 1.11477 1.17515 0.78625 0.83307 0.84789 1.90851 1.54134 1.64295 1.31071 1.46334 1.58329 1.23397 1.07520 1.21144 0.92717 0.82036 0.99357 0.89837 1.22664 0.93815 1.01813 1.00453 1.20829 0.99504 0.86305 0.88431 1.44181 0.99236 1.59656 1.27999 1.19116 0.92660 1.36302 0.90203 0.91298 1.25103 0.99461 0.99265 0.95652 1.70009 1.22976 1.50565 1.11060 0.86406 0.82186 0.78111 0.80243 1.21680 1.20917 1.21068 1.20352 0.86481 0.91289 0.95476 0.95541 1.21788 0.98825 1.01494 0.97172 1.22388 0.99604 0.99374 0.96037 0.88618 0.88923 0.89285 0.77778 0.72362 0.77022 0.92499 0.92878 0.96057 0.89262 0.93568 0.91796 0.94296 0.92802 0.91759 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.85 36.01 0.35 -0.78 16 2 C 0.23 2.56 6.86 -81.85 -0.56 2.00 16 3 N -0.53 -5.53 10.36 -10.52 -0.11 -5.64 16 4 C 0.33 3.07 12.27 -92.10 -1.13 1.94 16 5 N -0.54 -5.97 10.45 -14.32 -0.15 -6.12 16 6 C 0.40 4.63 7.85 -16.18 -0.13 4.50 16 7 O -0.47 -4.96 13.10 -17.52 -0.23 -5.19 16 8 C -0.25 -3.04 5.67 -104.56 -0.59 -3.63 16 9 C 0.58 8.24 5.48 -12.47 -0.07 8.17 16 10 O -0.53 -9.42 16.77 5.30 0.09 -9.34 16 11 N -0.71 -9.65 5.07 -54.81 -0.28 -9.93 16 12 C 0.15 2.49 2.41 -67.89 -0.16 2.32 16 13 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 14 C -0.15 -2.75 5.67 -26.38 -0.15 -2.90 16 15 C 0.18 4.09 5.31 -3.48 -0.02 4.07 16 16 N -0.59 -13.97 2.98 -164.51 -0.49 -14.46 16 17 C -0.25 -6.59 8.57 -15.06 -0.13 -6.72 16 18 H 0.07 1.75 6.24 -52.49 -0.33 1.42 16 19 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 20 N -0.90 -25.66 11.22 55.49 0.62 -25.03 16 21 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.17 3.39 3.49 -67.60 -0.24 3.16 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 C -0.14 -2.44 7.96 37.16 0.30 -2.14 16 28 C -0.13 -2.17 4.84 -26.61 -0.13 -2.30 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.99 7.18 -51.93 -0.37 0.62 16 32 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.42 2.68 9.06 45.56 0.41 3.09 16 34 H 0.40 4.60 8.59 -40.82 -0.35 4.25 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 2.33 6.13 -51.93 -0.32 2.01 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.97 7.43 -51.93 -0.39 0.58 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -32.33 361.51 -8.36 -40.69 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.49 Total: 5.70 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.74 Total: 7.72 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.40 Total: -61.19 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.14 Total: -14.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.33 -8.36 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947638806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.107 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds