Wall clock time and date at job start Tue Mar 31 2020 13:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32220 * 120.50856 * 2 1 4 4 C 1.31902 * 121.14281 * 180.02562 * 3 2 1 5 5 N 1.31754 * 122.19909 * 359.97438 * 4 3 2 6 6 C 1.32746 * 120.86890 * 359.76624 * 5 4 3 7 7 O 1.35275 * 120.61952 * 180.26605 * 6 5 4 8 8 C 1.39765 * 120.51227 * 180.02562 * 2 1 3 9 9 C 1.47536 * 120.97938 * 359.95702 * 8 2 1 10 10 O 1.21578 * 119.99994 * 89.99928 * 9 8 2 11 11 N 1.34783 * 119.99734 * 269.99975 * 9 8 2 12 12 C 1.46499 * 119.99940 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.44764 * 35.03273 * 12 11 9 14 14 C 1.53040 * 109.45658 * 275.06910 * 12 11 9 15 15 C 1.53632 * 109.23932 * 178.48947 * 14 12 11 16 16 N 1.46930 * 108.54007 * 54.85582 * 15 14 12 17 17 C 1.36942 * 120.62812 * 126.37053 * 16 15 14 18 18 H 1.07992 * 119.99640 * 209.59851 * 17 16 15 19 19 C 1.38806 * 120.00017 * 29.59805 * 17 16 15 20 20 N 1.31618 * 120.00156 * 15.65779 * 19 17 16 21 21 Si 1.86801 * 119.99857 * 195.65668 * 19 17 16 22 22 H 1.48504 * 109.47072 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47076 * 300.00237 * 21 19 17 24 24 H 1.48497 * 109.47023 * 60.00155 * 21 19 17 25 25 C 1.46922 * 118.73926 * 306.09158 * 16 15 14 26 26 H 1.08999 * 109.58756 * 294.07579 * 25 16 15 27 27 C 1.52997 * 109.58771 * 173.79246 * 25 16 15 28 28 C 1.53034 * 109.45988 * 155.00036 * 12 11 9 29 29 H 1.08994 * 109.46911 * 269.97795 * 1 2 3 30 30 H 1.08996 * 109.46897 * 29.97798 * 1 2 3 31 31 H 1.08995 * 109.46749 * 149.98328 * 1 2 3 32 32 H 1.07997 * 118.89970 * 179.97438 * 4 3 2 33 33 H 0.96707 * 114.00076 * 270.22901 * 7 6 5 34 34 H 0.97000 * 119.99711 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.50002 * 298.56359 * 14 12 11 36 36 H 1.08992 * 109.50238 * 58.66569 * 14 12 11 37 37 H 1.08991 * 109.73950 * 295.11909 * 15 14 12 38 38 H 1.08999 * 109.66483 * 174.54359 * 15 14 12 39 39 H 0.97004 * 119.99842 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.47270 * 59.99953 * 27 25 16 41 41 H 1.08997 * 109.47484 * 180.02562 * 27 25 16 42 42 H 1.09002 * 109.47150 * 300.00357 * 27 25 16 43 43 H 1.09004 * 109.49990 * 61.43465 * 28 12 11 44 44 H 1.09005 * 109.52527 * 301.35214 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2116 0.0467 -0.0005 6 6 3.6235 -1.1434 0.0046 7 8 4.3619 -2.2768 0.0100 8 6 2.2166 -1.2041 -0.0005 9 6 1.5125 -2.5006 -0.0002 10 8 1.2216 -3.0347 -1.0529 11 7 1.1916 -3.0928 1.1673 12 6 0.4929 -4.3804 1.1677 13 1 0.8380 -4.9809 0.3259 14 6 -1.0136 -4.1429 1.0409 15 6 -1.7382 -5.4971 1.0037 16 7 -1.3472 -6.2690 2.1912 17 6 -2.2971 -6.7870 3.0306 18 1 -2.0773 -6.9170 4.0799 19 6 -3.5424 -7.1449 2.5327 20 7 -3.7178 -7.2824 1.2355 21 14 -4.9693 -7.4316 3.7037 22 1 -6.1802 -7.8010 2.9275 23 1 -4.6275 -8.5321 4.6404 24 1 -5.2343 -6.1902 4.4743 25 6 0.0823 -6.4798 2.4576 26 1 0.5120 -7.1033 1.6736 27 6 0.2554 -7.1680 3.8130 28 6 0.7863 -5.1193 2.4754 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5141 32 1 4.0086 2.1049 -0.0009 33 1 4.5799 -2.6084 -0.8719 34 1 1.4240 -2.6668 2.0072 35 1 -1.3638 -3.5635 1.8952 36 1 -1.2196 -3.5962 0.1208 37 1 -1.4540 -6.0422 0.1037 38 1 -2.8163 -5.3366 1.0111 39 1 -4.5880 -7.5329 0.8877 40 1 -0.2564 -8.1302 3.8000 41 1 1.3164 -7.3230 4.0089 42 1 -0.1704 -6.5406 4.5961 43 1 0.4192 -4.5307 3.3161 44 1 1.8615 -5.2674 2.5768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947638806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:34 Heat of formation + Delta-G solvation = -33.809766 kcal Electronic energy + Delta-G solvation = -27551.896990 eV Core-core repulsion = 23697.233435 eV Total energy + Delta-G solvation = -3854.663554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55877 -40.82118 -39.22997 -38.86173 -36.15425 -35.35405 -34.23886 -33.37361 -32.67549 -31.22095 -29.75028 -27.99786 -26.89351 -26.06245 -24.00970 -23.78666 -22.78653 -21.58517 -21.03491 -20.04129 -19.21835 -18.97642 -18.16105 -17.57373 -17.22137 -16.92181 -16.19495 -15.82419 -15.62839 -15.60500 -15.33729 -15.19891 -14.88972 -14.53411 -14.46845 -14.27164 -13.90231 -13.73041 -13.32949 -13.16489 -12.94083 -12.72854 -12.68165 -12.62289 -12.47770 -12.35830 -12.11674 -11.85156 -11.71449 -11.52058 -11.50251 -11.41123 -10.95945 -10.68003 -10.55797 -10.52739 -10.10811 -8.62683 -7.82485 -5.28950 -0.57435 -0.29823 1.28606 1.49279 1.51015 1.57426 1.95980 2.11621 2.47705 2.54224 2.87269 3.10361 3.33218 3.43759 3.62331 3.75337 3.85598 4.05372 4.07233 4.20140 4.25843 4.39814 4.52706 4.59325 4.61445 4.70716 4.76307 4.80666 4.88036 4.95227 5.06920 5.07302 5.14287 5.17063 5.39104 5.43178 5.52567 5.55875 5.63650 5.72964 5.74993 6.26839 6.38061 6.44980 6.82450 7.02759 7.19134 7.90563 8.43380 9.24658 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.003141 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.216518 B = 8913.472935 C = 9513.989051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.230 3.770 3 N -0.533 5.533 4 C 0.340 3.660 5 N -0.554 5.554 6 C 0.400 3.600 7 O -0.478 6.478 8 C -0.265 4.265 9 C 0.584 3.416 10 O -0.567 6.567 11 N -0.694 5.694 12 C 0.162 3.838 13 H 0.061 0.939 14 C -0.130 4.130 15 C 0.183 3.817 16 N -0.603 5.603 17 C -0.250 4.250 18 H 0.079 0.921 19 C -0.054 4.054 20 N -0.939 5.939 21 Si 0.962 3.038 22 H -0.300 1.300 23 H -0.276 1.276 24 H -0.277 1.277 25 C 0.160 3.840 26 H 0.011 0.989 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.245 0.755 33 H 0.430 0.570 34 H 0.411 0.589 35 H 0.065 0.935 36 H 0.051 0.949 37 H -0.011 1.011 38 H 0.056 0.944 39 H 0.247 0.753 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.949 16.562 0.469 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.249 5.249 4 C 0.054 3.946 5 N -0.280 5.280 6 C 0.212 3.788 7 O -0.289 6.289 8 C -0.274 4.274 9 C 0.368 3.632 10 O -0.446 6.446 11 N -0.343 5.343 12 C 0.058 3.942 13 H 0.079 0.921 14 C -0.170 4.170 15 C 0.056 3.944 16 N -0.327 5.327 17 C -0.381 4.381 18 H 0.096 0.904 19 C -0.249 4.249 20 N -0.586 5.586 21 Si 0.791 3.209 22 H -0.227 1.227 23 H -0.201 1.201 24 H -0.203 1.203 25 C 0.054 3.946 26 H 0.029 0.971 27 C -0.184 4.184 28 C -0.158 4.158 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.295 0.705 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.007 0.993 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.066 16.918 0.249 22.655 hybrid contribution -1.254 -1.347 -0.159 1.847 sum 13.812 15.571 0.090 20.814 Atomic orbital electron populations 1.20997 0.86000 1.04937 1.05426 1.22070 0.98479 0.85832 0.85237 1.68422 1.10791 1.28775 1.16892 1.25826 0.86027 0.97052 0.85701 1.68192 1.42781 0.98779 1.18226 1.19483 0.85371 0.86510 0.87447 1.84572 1.72279 1.35783 1.36288 1.21682 0.95343 0.96227 1.14192 1.17745 0.77760 0.83656 0.84027 1.90835 1.55694 1.65553 1.32504 1.46037 1.57697 1.22302 1.08295 1.20758 0.91212 0.83199 0.99011 0.92094 1.22389 0.95126 0.98793 1.00691 1.20549 0.98064 0.88360 0.87384 1.44444 1.00857 1.59848 1.27535 1.19492 0.93062 1.34584 0.90931 0.90390 1.25847 1.01969 1.00168 0.96884 1.70185 1.22880 1.52675 1.12856 0.85416 0.78935 0.78235 0.78312 1.22670 1.20132 1.20279 1.20614 0.84329 0.93542 0.96107 0.97081 1.21707 1.01020 0.99892 0.95828 1.22190 1.00909 0.96936 0.95788 0.87238 0.87535 0.91120 0.73899 0.70530 0.75254 0.91657 0.93068 0.99297 0.92586 0.94401 0.94154 0.90609 0.92617 0.90609 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.85 71.24 0.70 -1.38 16 2 C 0.23 4.72 6.86 42.87 0.29 5.01 16 3 N -0.53 -9.82 10.36 -187.21 -1.94 -11.76 16 4 C 0.34 5.23 12.27 180.86 2.22 7.45 16 5 N -0.55 -10.78 10.45 -312.05 -3.26 -14.04 16 6 C 0.40 8.56 7.85 85.19 0.67 9.23 16 7 O -0.48 -9.29 13.10 -85.60 -1.12 -10.41 16 8 C -0.27 -6.09 5.67 -19.83 -0.11 -6.20 16 9 C 0.58 16.25 5.48 86.69 0.47 16.72 16 10 O -0.57 -20.44 16.77 -3.96 -0.07 -20.51 16 11 N -0.69 -17.80 5.07 -445.58 -2.26 -20.06 16 12 C 0.16 5.24 2.41 45.02 0.11 5.35 16 13 H 0.06 2.29 7.58 -2.38 -0.02 2.28 16 14 C -0.13 -4.88 5.67 30.82 0.17 -4.71 16 15 C 0.18 8.88 5.31 86.51 0.46 9.34 16 16 N -0.60 -29.07 2.98 -674.40 -2.01 -31.08 16 17 C -0.25 -13.13 8.57 84.03 0.72 -12.41 16 18 H 0.08 3.89 6.24 -2.91 -0.02 3.87 16 19 C -0.05 -2.95 4.94 84.86 0.42 -2.53 16 20 N -0.94 -55.69 11.22 21.65 0.24 -55.45 16 21 Si 0.96 44.19 29.58 68.60 2.03 46.22 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.16 6.22 3.49 44.98 0.16 6.38 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 C -0.13 -4.33 7.96 71.98 0.57 -3.75 16 28 C -0.12 -3.57 4.84 30.67 0.15 -3.42 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.54 7.18 -2.39 -0.02 1.52 16 32 H 0.25 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.43 4.99 9.06 -74.05 -0.67 4.32 16 34 H 0.41 8.39 8.59 -92.71 -0.80 7.59 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.06 3.08 6.13 -2.39 -0.01 3.06 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.04 1.54 7.63 -2.39 -0.02 1.52 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.87 7.43 -2.39 -0.02 1.85 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -72.04 361.51 -1.80 -73.84 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.42 Total: 18.16 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 7.01 Total: 25.09 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -9.23 Total: -132.40 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.19 Total: -30.92 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.04 -1.80 -73.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947638806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.033 kcal (2) G-P(sol) polarization free energy of solvation -72.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds