Wall clock time and date at job start Tue Mar 31 2020 12:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21304 * 119.99891 * 2 1 4 4 N 1.34778 * 120.00256 * 180.02562 * 2 1 3 5 5 C 1.40435 * 120.00329 * 180.02562 * 4 2 1 6 6 C 1.35010 * 126.86150 * 0.02562 * 5 4 2 7 7 N 1.36773 * 108.93800 * 179.97438 * 6 5 4 8 8 H 0.97000 * 124.79381 * 180.02562 * 7 6 5 9 9 C 1.34589 * 110.41575 * 359.97438 * 7 6 5 10 10 C 1.50699 * 125.82280 * 179.97438 * 9 7 6 11 11 C 1.37838 * 108.35941 * 0.24997 * 9 7 6 12 12 C 1.47133 * 126.98913 * 179.75511 * 11 9 7 13 13 O 1.21638 * 120.00247 * 90.02754 * 12 11 9 14 14 N 1.34777 * 119.99690 * 270.01439 * 12 11 9 15 15 C 1.46963 * 120.59794 * 359.72875 * 14 12 11 16 16 C 1.53814 * 108.39851 * 124.75156 * 15 14 12 17 17 N 1.46970 * 108.57610 * 49.64287 * 16 15 14 18 18 C 1.36927 * 120.59293 * 124.62675 * 17 16 15 19 19 H 1.08004 * 119.99952 * 208.18189 * 18 17 16 20 20 C 1.38809 * 120.00709 * 28.17657 * 18 17 16 21 21 N 1.31624 * 119.99728 * 17.55650 * 20 18 17 22 22 Si 1.86793 * 120.00580 * 197.56248 * 20 18 17 23 23 H 1.48502 * 109.47408 * 89.99524 * 22 20 18 24 24 H 1.48501 * 109.47172 * 209.99655 * 22 20 18 25 25 H 1.48498 * 109.47175 * 329.99763 * 22 20 18 26 26 C 1.46966 * 118.80897 * 304.64058 * 17 16 15 27 27 C 1.46965 * 120.59310 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47195 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46900 * 299.99519 * 1 2 3 30 30 H 1.08994 * 109.47037 * 59.99753 * 1 2 3 31 31 H 0.97003 * 119.99769 * 359.97438 * 4 2 1 32 32 H 1.08003 * 125.53094 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.47327 * 90.02782 * 10 9 7 34 34 H 1.09004 * 109.46746 * 330.03135 * 10 9 7 35 35 H 1.08998 * 109.47151 * 210.03303 * 10 9 7 36 36 H 1.08996 * 109.61201 * 244.53596 * 15 14 12 37 37 H 1.09007 * 109.60839 * 5.05155 * 15 14 12 38 38 H 1.09001 * 109.74438 * 289.85202 * 16 15 14 39 39 H 1.08994 * 109.53141 * 169.30315 * 16 15 14 40 40 H 0.96994 * 120.00089 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.61342 * 295.48422 * 26 17 16 42 42 H 1.09001 * 109.74696 * 175.05861 * 26 17 16 43 43 H 1.09006 * 109.60950 * 354.95404 * 27 14 12 44 44 H 1.09001 * 109.61341 * 115.28667 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5853 -1.1672 0.0000 6 6 4.3952 -0.0870 0.0015 7 7 5.6965 -0.5079 0.0022 8 1 6.4683 0.0796 0.0036 9 6 5.7550 -1.8526 0.0016 10 6 7.0141 -2.6806 0.0015 11 6 4.4669 -2.3432 -0.0051 12 6 4.0580 -3.7565 -0.0130 13 8 3.8848 -4.3455 1.0371 14 7 3.8750 -4.3985 -1.1838 15 6 4.0745 -3.6979 -2.4602 16 6 5.0957 -4.4899 -3.2943 17 7 4.6872 -5.9015 -3.3175 18 6 4.5005 -6.5535 -4.5071 19 1 3.8028 -7.3756 -4.5686 20 6 5.2079 -6.1579 -5.6340 21 7 6.2860 -5.4137 -5.5065 22 14 4.6298 -6.6816 -7.3313 23 1 3.6899 -5.6657 -7.8695 24 1 5.8002 -6.8024 -8.2373 25 1 3.9398 -7.9931 -7.2364 26 6 4.4822 -6.6006 -2.0411 27 6 3.4661 -5.8099 -1.2071 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6959 -2.0073 -0.0005 32 1 4.0685 0.9424 0.0022 33 1 7.3173 -2.8811 1.0291 34 1 7.8070 -2.1362 -0.5115 35 1 6.8289 -3.6234 -0.5133 36 1 3.1276 -3.6382 -2.9967 37 1 4.4546 -2.6939 -2.2710 38 1 6.0850 -4.4027 -2.8450 39 1 5.1174 -4.0987 -4.3114 40 1 6.7805 -5.1375 -6.2939 41 1 5.4278 -6.6636 -1.5026 42 1 4.1001 -7.6041 -2.2280 43 1 3.4441 -6.2012 -0.1899 44 1 2.4756 -5.8965 -1.6537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949005434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:26 Heat of formation + Delta-G solvation = 4.758625 kcal Electronic energy + Delta-G solvation = -27977.845130 eV Core-core repulsion = 24124.854027 eV Total energy + Delta-G solvation = -3852.991104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35792 -39.52849 -38.99974 -36.64166 -34.81731 -33.78374 -31.76580 -31.34129 -30.77339 -30.06617 -29.06694 -27.00783 -25.87277 -23.86408 -22.89858 -22.14819 -21.88709 -19.98100 -19.62932 -18.44174 -17.96854 -16.69672 -16.26765 -15.94357 -15.82875 -15.48818 -15.30224 -14.79099 -14.51508 -14.36894 -13.89188 -13.66625 -13.48815 -13.32208 -13.18050 -12.92061 -12.76884 -12.74548 -12.65066 -12.34330 -12.25576 -11.67120 -11.63174 -11.31957 -10.86630 -10.84408 -10.73055 -10.50388 -10.23007 -10.01369 -9.96626 -9.84798 -9.47642 -8.59873 -8.20855 -8.13846 -7.66632 -6.71737 -5.86635 -3.30642 2.10076 2.19374 2.85370 3.00399 3.06486 3.33330 3.37942 3.40954 3.41681 3.73122 4.43649 4.57119 4.87105 4.93402 5.05722 5.17450 5.20978 5.29009 5.38037 5.42717 5.60185 5.60860 5.81068 5.84337 5.88967 5.93058 5.93746 6.01352 6.11849 6.21405 6.25512 6.40098 6.46468 6.78301 6.86630 6.94618 7.01377 7.24569 7.39228 7.47104 7.58634 7.71460 7.97723 8.04003 8.35028 8.64990 9.11336 9.74046 10.31111 11.20947 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.003884 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.444342 B = 7207.656707 C = 7567.071754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.509 3.491 3 O -0.541 6.541 4 N -0.637 5.637 5 C 0.085 3.915 6 C -0.027 4.027 7 N -0.546 5.546 8 H 0.418 0.582 9 C 0.086 3.914 10 C -0.092 4.092 11 C -0.224 4.224 12 C 0.587 3.413 13 O -0.557 6.557 14 N -0.588 5.588 15 C 0.085 3.915 16 C 0.160 3.840 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.133 3.867 27 C 0.094 3.906 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.412 0.588 32 H 0.191 0.809 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.098 0.902 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 10.229 10.278 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.297 3.703 3 O -0.419 6.419 4 N -0.280 5.280 5 C -0.015 4.015 6 C -0.157 4.157 7 N -0.143 5.143 8 H 0.255 0.745 9 C -0.031 4.031 10 C -0.149 4.149 11 C -0.236 4.236 12 C 0.374 3.626 13 O -0.437 6.437 14 N -0.319 5.319 15 C -0.039 4.039 16 C 0.034 3.966 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.005 3.995 27 C -0.030 4.030 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.247 0.753 32 H 0.208 0.792 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.988 10.790 10.656 15.965 hybrid contribution -0.191 -0.391 -1.061 1.147 sum -5.179 10.399 9.596 15.068 Atomic orbital electron populations 1.21810 0.90771 1.04619 1.05497 1.20892 0.90757 0.82836 0.75773 1.90577 1.70129 1.31404 1.49791 1.43030 1.03980 1.09662 1.71284 1.17743 0.82161 0.92284 1.09332 1.21988 0.81272 0.99408 1.12998 1.41353 1.08120 1.05891 1.58941 0.74497 1.20279 0.95204 0.83313 1.04293 1.20447 0.91951 0.99417 1.03099 1.19872 0.91662 0.91776 1.20279 1.17450 0.76907 0.84941 0.83309 1.90728 1.53015 1.68204 1.31709 1.48086 1.65937 1.11882 1.06009 1.22698 1.01229 0.96192 0.83800 1.21240 0.92176 0.83679 0.99521 1.43995 1.80255 1.06576 1.00549 1.19216 1.17762 1.15302 0.86147 0.91475 1.25047 0.95196 1.00396 0.98837 1.70016 1.15751 1.40322 1.28522 0.86275 0.77753 0.78421 0.84227 1.21401 1.21757 1.20387 1.21287 0.95465 0.94909 0.87793 1.22238 0.98766 0.80805 1.01201 0.90317 0.88479 0.88357 0.75274 0.79203 0.90476 0.90956 0.89456 0.92299 0.90696 0.95917 0.88422 0.93541 0.95888 0.91577 0.90003 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.39 36.00 0.37 -0.84 16 2 C 0.51 6.04 7.91 -10.99 -0.09 5.95 16 3 O -0.54 -8.01 14.32 5.54 0.08 -7.93 16 4 N -0.64 -8.13 5.46 -8.52 -0.05 -8.18 16 5 C 0.09 1.27 7.22 -81.52 -0.59 0.69 16 6 C -0.03 -0.37 10.79 -16.49 -0.18 -0.54 16 7 N -0.55 -6.37 5.90 -8.68 -0.05 -6.42 16 8 H 0.42 3.35 8.96 -40.82 -0.37 2.99 16 9 C 0.09 1.21 7.12 -81.53 -0.58 0.63 16 10 C -0.09 -1.13 10.25 36.01 0.37 -0.76 16 11 C -0.22 -3.62 4.05 -102.89 -0.42 -4.04 16 12 C 0.59 10.70 7.20 -12.65 -0.09 10.61 16 13 O -0.56 -11.61 16.51 5.24 0.09 -11.52 16 14 N -0.59 -10.68 2.94 -173.56 -0.51 -11.19 16 15 C 0.08 1.58 6.53 -3.37 -0.02 1.56 16 16 C 0.16 3.61 5.53 -3.36 -0.02 3.59 16 17 N -0.59 -14.14 2.97 -171.74 -0.51 -14.65 16 18 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 19 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 20 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 21 N -0.90 -25.06 11.20 55.49 0.62 -24.43 16 22 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.13 2.72 6.67 -3.58 -0.02 2.69 16 27 C 0.09 1.70 6.59 -3.58 -0.02 1.68 16 28 H 0.08 0.43 7.91 -51.93 -0.41 0.02 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.41 4.73 8.66 -40.82 -0.35 4.37 16 32 H 0.19 2.57 5.86 -52.48 -0.31 2.26 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.29 7.94 -51.93 -0.41 0.87 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.32 6.25 -51.92 -0.32 0.99 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 2.46 5.99 -51.93 -0.31 2.14 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 43 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -33.49 362.79 -7.60 -41.09 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.19 Total: 7.46 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -1.52 Total: 14.42 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.50 Total: -64.87 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.49 -7.60 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949005434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.845 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds