Wall clock time and date at job start Tue Mar 31 2020 12:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21304 * 119.99891 * 2 1 4 4 N 1.34778 * 120.00256 * 180.02562 * 2 1 3 5 5 C 1.40435 * 120.00329 * 180.02562 * 4 2 1 6 6 C 1.35010 * 126.86150 * 0.02562 * 5 4 2 7 7 N 1.36773 * 108.93800 * 179.97438 * 6 5 4 8 8 H 0.97000 * 124.79381 * 180.02562 * 7 6 5 9 9 C 1.34589 * 110.41575 * 359.97438 * 7 6 5 10 10 C 1.50699 * 125.82280 * 179.97438 * 9 7 6 11 11 C 1.37838 * 108.35941 * 0.24997 * 9 7 6 12 12 C 1.47133 * 126.98913 * 179.75511 * 11 9 7 13 13 O 1.21638 * 120.00247 * 90.02754 * 12 11 9 14 14 N 1.34777 * 119.99690 * 270.01439 * 12 11 9 15 15 C 1.46963 * 120.59794 * 359.72875 * 14 12 11 16 16 C 1.53814 * 108.39851 * 124.75156 * 15 14 12 17 17 N 1.46970 * 108.57610 * 49.64287 * 16 15 14 18 18 C 1.36927 * 120.59293 * 124.62675 * 17 16 15 19 19 H 1.08004 * 119.99952 * 208.18189 * 18 17 16 20 20 C 1.38809 * 120.00709 * 28.17657 * 18 17 16 21 21 N 1.31624 * 119.99728 * 17.55650 * 20 18 17 22 22 Si 1.86793 * 120.00580 * 197.56248 * 20 18 17 23 23 H 1.48502 * 109.47408 * 89.99524 * 22 20 18 24 24 H 1.48501 * 109.47172 * 209.99655 * 22 20 18 25 25 H 1.48498 * 109.47175 * 329.99763 * 22 20 18 26 26 C 1.46966 * 118.80897 * 304.64058 * 17 16 15 27 27 C 1.46965 * 120.59310 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47195 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46900 * 299.99519 * 1 2 3 30 30 H 1.08994 * 109.47037 * 59.99753 * 1 2 3 31 31 H 0.97003 * 119.99769 * 359.97438 * 4 2 1 32 32 H 1.08003 * 125.53094 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.47327 * 90.02782 * 10 9 7 34 34 H 1.09004 * 109.46746 * 330.03135 * 10 9 7 35 35 H 1.08998 * 109.47151 * 210.03303 * 10 9 7 36 36 H 1.08996 * 109.61201 * 244.53596 * 15 14 12 37 37 H 1.09007 * 109.60839 * 5.05155 * 15 14 12 38 38 H 1.09001 * 109.74438 * 289.85202 * 16 15 14 39 39 H 1.08994 * 109.53141 * 169.30315 * 16 15 14 40 40 H 0.96994 * 120.00089 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.61342 * 295.48422 * 26 17 16 42 42 H 1.09001 * 109.74696 * 175.05861 * 26 17 16 43 43 H 1.09006 * 109.60950 * 354.95404 * 27 14 12 44 44 H 1.09001 * 109.61341 * 115.28667 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5853 -1.1672 0.0000 6 6 4.3952 -0.0870 0.0015 7 7 5.6965 -0.5079 0.0022 8 1 6.4683 0.0796 0.0036 9 6 5.7550 -1.8526 0.0016 10 6 7.0141 -2.6806 0.0015 11 6 4.4669 -2.3432 -0.0051 12 6 4.0580 -3.7565 -0.0130 13 8 3.8848 -4.3455 1.0371 14 7 3.8750 -4.3985 -1.1838 15 6 4.0745 -3.6979 -2.4602 16 6 5.0957 -4.4899 -3.2943 17 7 4.6872 -5.9015 -3.3175 18 6 4.5005 -6.5535 -4.5071 19 1 3.8028 -7.3756 -4.5686 20 6 5.2079 -6.1579 -5.6340 21 7 6.2860 -5.4137 -5.5065 22 14 4.6298 -6.6816 -7.3313 23 1 3.6899 -5.6657 -7.8695 24 1 5.8002 -6.8024 -8.2373 25 1 3.9398 -7.9931 -7.2364 26 6 4.4822 -6.6006 -2.0411 27 6 3.4661 -5.8099 -1.2071 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6959 -2.0073 -0.0005 32 1 4.0685 0.9424 0.0022 33 1 7.3173 -2.8811 1.0291 34 1 7.8070 -2.1362 -0.5115 35 1 6.8289 -3.6234 -0.5133 36 1 3.1276 -3.6382 -2.9967 37 1 4.4546 -2.6939 -2.2710 38 1 6.0850 -4.4027 -2.8450 39 1 5.1174 -4.0987 -4.3114 40 1 6.7805 -5.1375 -6.2939 41 1 5.4278 -6.6636 -1.5026 42 1 4.1001 -7.6041 -2.2280 43 1 3.4441 -6.2012 -0.1899 44 1 2.4756 -5.8965 -1.6537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949005434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:26 Heat of formation + Delta-G solvation = -18.144175 kcal Electronic energy + Delta-G solvation = -27978.838270 eV Core-core repulsion = 24124.854027 eV Total energy + Delta-G solvation = -3853.984243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45123 -40.69346 -40.28033 -38.31688 -35.83021 -35.53400 -33.35411 -32.49550 -32.03279 -31.55783 -29.99740 -28.67192 -27.02835 -25.56909 -24.52280 -23.39630 -23.08026 -21.46120 -20.72800 -19.80706 -19.22450 -18.30704 -17.54847 -17.25756 -16.81287 -16.75886 -16.57996 -16.40680 -15.94812 -15.53793 -15.36727 -15.20839 -15.01542 -14.83290 -14.67703 -14.05398 -13.91332 -13.62641 -13.55958 -13.39002 -13.32835 -13.16981 -13.07584 -12.77631 -12.66847 -12.47605 -12.21159 -12.00021 -11.89766 -11.85056 -11.64810 -11.03931 -10.89288 -10.57276 -9.81469 -9.29106 -8.71580 -8.63717 -7.86753 -5.34180 1.05825 1.13079 1.49316 1.51898 1.54052 1.59857 1.96289 2.01586 2.19503 2.51090 2.55688 3.28060 3.62748 3.75172 3.77223 3.83162 4.20903 4.26783 4.28208 4.37560 4.41974 4.47937 4.60164 4.65164 4.66072 4.66486 4.78176 4.80691 4.85305 4.89715 4.93217 5.05812 5.09388 5.16250 5.26350 5.55820 5.63432 5.67976 5.79824 5.92301 6.37322 6.45018 6.50413 6.66918 7.11962 7.12790 7.19570 7.80856 8.34525 9.18377 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.003884 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.444342 B = 7207.656707 C = 7567.071754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.574 6.574 4 N -0.638 5.638 5 C 0.071 3.929 6 C -0.027 4.027 7 N -0.527 5.527 8 H 0.436 0.564 9 C 0.092 3.908 10 C -0.089 4.089 11 C -0.260 4.260 12 C 0.595 3.405 13 O -0.585 6.585 14 N -0.588 5.588 15 C 0.108 3.892 16 C 0.170 3.830 17 N -0.606 5.606 18 C -0.264 4.264 19 H 0.070 0.930 20 C -0.044 4.044 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.284 1.284 24 H -0.298 1.298 25 H -0.270 1.270 26 C 0.133 3.867 27 C 0.103 3.897 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.417 0.583 32 H 0.194 0.806 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.251 0.749 41 H 0.011 0.989 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 10.901 10.514 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.294 3.706 3 O -0.454 6.454 4 N -0.281 5.281 5 C -0.030 4.030 6 C -0.158 4.158 7 N -0.125 5.125 8 H 0.277 0.723 9 C -0.027 4.027 10 C -0.146 4.146 11 C -0.272 4.272 12 C 0.384 3.616 13 O -0.466 6.466 14 N -0.319 5.319 15 C -0.016 4.016 16 C 0.043 3.957 17 N -0.330 5.330 18 C -0.394 4.394 19 H 0.088 0.912 20 C -0.240 4.240 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.194 1.194 26 C 0.007 3.993 27 C -0.021 4.021 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.211 0.789 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.021 0.979 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.143 11.468 10.911 16.979 hybrid contribution 0.211 -0.611 -1.073 1.252 sum -5.932 10.857 9.839 15.807 Atomic orbital electron populations 1.21866 0.86977 1.06376 1.06644 1.21762 0.92483 0.81913 0.74406 1.90553 1.71197 1.32401 1.51272 1.43178 1.03310 1.10379 1.71249 1.17998 0.83352 0.92053 1.09565 1.22061 0.81746 0.99240 1.12723 1.41300 1.08399 1.05349 1.57416 0.72298 1.20471 0.95048 0.84214 1.02974 1.20461 0.92068 0.98192 1.03919 1.19826 0.93072 0.90932 1.23356 1.17671 0.75735 0.85630 0.82559 1.90703 1.54219 1.69170 1.32533 1.48085 1.65957 1.11903 1.05952 1.22349 1.00060 0.95910 0.83326 1.21021 0.92436 0.83750 0.98462 1.44230 1.80339 1.07285 1.01137 1.19526 1.17413 1.15287 0.87171 0.91215 1.25741 0.95341 1.00921 1.01958 1.70157 1.16865 1.41712 1.28997 0.85296 0.76917 0.78344 0.80036 1.21109 1.22433 1.19440 1.21363 0.95651 0.95666 0.86663 1.22111 0.98387 0.80522 1.01047 0.88316 0.87091 0.87216 0.74727 0.78939 0.89150 0.88339 0.92207 0.91858 0.89538 0.97933 0.91127 0.93999 0.97115 0.90697 0.89325 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.39 71.24 0.74 -1.17 16 2 C 0.50 11.24 7.91 87.66 0.69 11.93 16 3 O -0.57 -16.46 14.32 -3.10 -0.04 -16.50 16 4 N -0.64 -15.57 5.46 -299.24 -1.63 -17.20 16 5 C 0.07 2.05 7.22 39.31 0.28 2.34 16 6 C -0.03 -0.71 10.79 83.18 0.90 0.19 16 7 N -0.53 -11.37 5.90 -181.38 -1.07 -12.44 16 8 H 0.44 6.00 8.96 -92.71 -0.83 5.17 16 9 C 0.09 2.47 7.12 42.04 0.30 2.76 16 10 C -0.09 -2.09 10.25 71.24 0.73 -1.36 16 11 C -0.26 -8.20 4.05 -18.75 -0.08 -8.28 16 12 C 0.60 21.40 7.20 86.58 0.62 22.03 16 13 O -0.58 -24.13 16.51 -4.15 -0.07 -24.20 16 14 N -0.59 -21.03 2.94 -821.27 -2.41 -23.44 16 15 C 0.11 3.96 6.53 86.57 0.57 4.52 16 16 C 0.17 7.76 5.53 86.56 0.48 8.24 16 17 N -0.61 -29.16 2.97 -697.26 -2.07 -31.23 16 18 C -0.26 -13.83 9.58 84.03 0.80 -13.02 16 19 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 20 C -0.04 -2.33 4.90 84.86 0.42 -1.91 16 21 N -0.93 -52.60 11.20 21.65 0.24 -52.35 16 22 Si 0.97 43.02 29.59 68.60 2.03 45.05 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 C 0.13 5.42 6.67 86.43 0.58 6.00 16 27 C 0.10 3.64 6.59 86.43 0.57 4.21 16 28 H 0.10 0.79 7.91 -2.39 -0.02 0.77 16 29 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.42 9.05 8.66 -92.71 -0.80 8.24 16 32 H 0.19 5.01 5.86 -2.91 -0.02 4.99 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 3.00 6.25 -2.38 -0.01 2.98 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.07 3.63 5.99 -2.39 -0.01 3.62 16 40 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 2.88 7.94 -2.39 -0.02 2.86 16 43 H 0.09 3.04 6.99 -2.38 -0.02 3.03 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -72.18 362.79 1.99 -70.19 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.58 Total: 25.65 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 7.60 Total: 36.48 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -6.95 Total: -136.66 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.11 Total: -40.70 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.18 1.99 -70.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949005434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.043 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds