Wall clock time and date at job start Tue Mar 31 2020 13:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32526 * 120.41481 * 2 1 4 4 C 1.31757 * 120.96300 * 180.31193 * 3 2 1 5 5 N 1.31791 * 121.81615 * 359.66226 * 4 3 2 6 6 C 1.32792 * 120.71646 * 0.02562 * 5 4 3 7 7 O 1.35517 * 120.51033 * 180.02562 * 6 5 4 8 8 C 1.38195 * 120.41133 * 179.69942 * 2 1 3 9 9 C 1.50707 * 120.82253 * 359.97438 * 8 2 1 10 10 C 1.52993 * 109.46827 * 269.72060 * 9 8 2 11 11 C 1.50707 * 109.46827 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00197 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99596 * 180.02562 * 11 10 9 14 14 C 1.46969 * 120.59184 * 179.97438 * 13 11 10 15 15 C 1.53365 * 108.63823 * 235.24762 * 14 13 11 16 16 N 1.46971 * 108.63406 * 310.57818 * 15 14 13 17 17 C 1.36933 * 120.58954 * 235.20080 * 16 15 14 18 18 H 1.08004 * 119.99676 * 151.84704 * 17 16 15 19 19 C 1.38804 * 120.00274 * 331.57456 * 17 16 15 20 20 N 1.31613 * 120.00257 * 342.82344 * 19 17 16 21 21 Si 1.86809 * 120.00042 * 162.81945 * 19 17 16 22 22 H 1.48504 * 109.46931 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46750 * 119.99895 * 21 19 17 24 24 H 1.48498 * 109.47076 * 239.99975 * 21 19 17 25 25 C 1.46964 * 118.81046 * 55.47559 * 16 15 14 26 26 C 1.46965 * 120.59893 * 0.02562 * 13 11 10 27 27 H 1.09004 * 109.46831 * 270.30355 * 1 2 3 28 28 H 1.08997 * 109.46968 * 30.29387 * 1 2 3 29 29 H 1.08997 * 109.47521 * 150.30353 * 1 2 3 30 30 H 1.08004 * 119.08995 * 179.68842 * 4 3 2 31 31 H 0.96705 * 114.00163 * 269.97960 * 7 6 5 32 32 H 1.09000 * 109.47084 * 149.71678 * 9 8 2 33 33 H 1.09000 * 109.46684 * 29.72041 * 9 8 2 34 34 H 1.09008 * 109.47542 * 60.00220 * 10 9 8 35 35 H 1.08996 * 109.47528 * 300.00248 * 10 9 8 36 36 H 1.09001 * 109.60759 * 115.50025 * 14 13 11 37 37 H 1.08997 * 109.60686 * 354.99512 * 14 13 11 38 38 H 1.08993 * 109.61301 * 190.83327 * 15 14 13 39 39 H 1.09004 * 109.75220 * 70.40370 * 15 14 13 40 40 H 0.97004 * 120.00510 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.60931 * 64.27031 * 25 16 15 42 42 H 1.09004 * 109.60392 * 184.78099 * 25 16 15 43 43 H 1.09002 * 109.60509 * 244.49992 * 26 13 11 44 44 H 1.09000 * 109.60856 * 4.83277 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1429 0.0000 4 6 3.4954 1.1555 -0.0062 5 7 4.2009 0.0423 -0.0059 6 6 3.5997 -1.1417 0.0001 7 8 4.3293 -2.2837 0.0008 8 6 2.2065 -1.1918 0.0063 9 6 1.4813 -2.5129 0.0138 10 6 1.2426 -2.9553 1.4587 11 6 0.5168 -4.2761 1.4662 12 8 0.2193 -4.8105 0.4190 13 7 0.1974 -4.8628 2.6368 14 6 -0.5108 -6.1504 2.6594 15 6 -1.7852 -5.9942 3.4983 16 7 -1.4320 -5.3575 4.7750 17 6 -1.7573 -5.9533 5.9642 18 1 -1.1529 -5.7739 6.8411 19 6 -2.8671 -6.7831 6.0441 20 7 -3.7893 -6.7409 5.1060 21 14 -3.0517 -7.9601 7.4830 22 1 -1.8882 -7.8143 8.3941 23 1 -4.3010 -7.6463 8.2220 24 1 -3.1130 -9.3548 6.9769 25 6 -0.7288 -4.0672 4.7523 26 6 0.5501 -4.2259 3.9135 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5091 30 1 4.0114 2.1043 -0.0111 31 1 4.5374 -2.6181 -0.8824 32 1 2.0841 -3.2612 -0.5006 33 1 0.5239 -2.4046 -0.4960 34 1 0.6396 -2.2069 1.9731 35 1 2.1999 -3.0635 1.9685 36 1 0.1292 -6.9121 3.1048 37 1 -0.7754 -6.4402 1.6426 38 1 -2.2215 -6.9750 3.6870 39 1 -2.5031 -5.3709 2.9650 40 1 -4.5651 -7.3205 5.1620 41 1 -1.3709 -3.3085 4.3050 42 1 -0.4673 -3.7754 5.7695 43 1 1.2658 -4.8503 4.4483 44 1 0.9889 -3.2462 3.7247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949072342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:18 Heat of formation + Delta-G solvation = -2.195849 kcal Electronic energy + Delta-G solvation = -27101.505373 eV Core-core repulsion = 23248.212701 eV Total energy + Delta-G solvation = -3853.292672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62003 -39.67959 -37.99235 -36.93913 -35.42721 -33.93749 -33.45190 -31.26570 -31.12124 -30.06236 -28.70640 -27.07329 -25.57735 -23.68621 -23.18145 -22.88852 -22.07874 -20.38636 -19.13985 -18.56609 -18.35238 -17.29581 -16.56411 -16.26208 -15.61636 -15.49079 -15.11597 -14.86267 -14.49778 -14.40840 -13.89083 -13.70188 -13.57521 -13.34050 -13.29803 -13.19088 -13.10288 -12.78794 -12.38761 -12.28692 -12.10884 -11.71899 -11.25906 -11.18803 -10.87196 -10.84280 -10.76151 -10.58332 -10.58044 -10.28175 -10.01186 -9.87821 -9.63061 -9.55506 -9.29524 -8.63073 -8.27415 -6.75310 -5.88408 -3.33960 0.49995 0.64396 2.93819 3.00912 3.30745 3.31735 3.39938 3.41626 3.46761 3.72409 4.04810 4.35801 4.42119 4.49813 4.77516 4.89238 4.97174 5.06713 5.15263 5.23100 5.28175 5.29633 5.39410 5.49986 5.62729 5.69894 5.73018 5.83633 5.85590 5.88259 6.10858 6.11332 6.30339 6.35003 6.45976 6.61687 6.64957 6.82804 7.03310 7.21874 7.50888 7.69587 7.74965 7.87650 8.32631 8.51616 9.08490 9.71092 10.27634 11.18990 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.002679 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.680003 B =10450.725317 C =10587.428368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.192 3.808 3 N -0.526 5.526 4 C 0.315 3.685 5 N -0.545 5.545 6 C 0.364 3.636 7 O -0.471 6.471 8 C -0.199 4.199 9 C -0.051 4.051 10 C -0.131 4.131 11 C 0.510 3.490 12 O -0.558 6.558 13 N -0.596 5.596 14 C 0.087 3.913 15 C 0.159 3.841 16 N -0.591 5.591 17 C -0.258 4.258 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.131 3.869 26 C 0.088 3.912 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.200 0.800 31 H 0.407 0.593 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.023 0.977 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.564 12.453 -11.197 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.048 3.952 3 N -0.242 5.242 4 C 0.027 3.973 5 N -0.270 5.270 6 C 0.177 3.823 7 O -0.279 6.279 8 C -0.205 4.205 9 C -0.090 4.090 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.438 6.438 13 N -0.328 5.328 14 C -0.037 4.037 15 C 0.032 3.968 16 N -0.314 5.314 17 C -0.387 4.387 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.214 1.214 25 C 0.003 3.997 26 C -0.037 4.037 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.217 0.783 31 H 0.267 0.733 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.690 12.885 -11.115 21.228 hybrid contribution -0.309 -1.393 0.460 1.500 sum 12.381 11.492 -10.655 19.972 Atomic orbital electron populations 1.20930 0.87354 1.04552 1.04388 1.21614 0.97846 0.86893 0.88857 1.68288 1.10229 1.30124 1.15515 1.24760 0.86433 0.95838 0.90310 1.67973 1.43308 0.98986 1.16689 1.19320 0.86665 0.85601 0.90746 1.84735 1.73532 1.35451 1.34175 1.21689 0.94264 0.98510 1.06041 1.20148 1.00894 0.91303 0.96660 1.21597 1.01826 0.95819 0.97870 1.20434 0.79547 0.86595 0.83594 1.90643 1.55912 1.65891 1.31320 1.48078 1.56423 1.22754 1.05505 1.22508 0.96173 0.83354 1.01627 1.21185 0.90629 1.00367 0.84595 1.44025 1.66887 1.17899 1.02606 1.19228 1.06433 1.24279 0.88779 0.91425 1.25091 0.94772 1.01625 0.98015 1.70025 1.09513 1.39685 1.35198 0.86207 0.77600 0.80953 0.81891 1.20187 1.21659 1.21433 1.21353 0.91245 0.89454 0.97610 1.22467 0.99501 0.96835 0.84885 0.89042 0.89650 0.89318 0.78339 0.73298 0.89665 0.89225 0.89082 0.88909 0.92218 0.90110 0.88271 0.95877 0.93471 0.95876 0.91477 0.91522 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.83 36.00 0.35 -0.57 16 2 C 0.19 1.92 6.82 -82.31 -0.56 1.36 16 3 N -0.53 -5.49 10.37 -10.86 -0.11 -5.60 16 4 C 0.31 2.99 12.28 -92.19 -1.13 1.86 16 5 N -0.54 -5.98 10.46 -14.64 -0.15 -6.13 16 6 C 0.36 3.85 7.81 -16.70 -0.13 3.72 16 7 O -0.47 -4.38 12.76 -18.24 -0.23 -4.61 16 8 C -0.20 -2.02 5.18 -104.20 -0.54 -2.56 16 9 C -0.05 -0.54 4.10 -27.88 -0.11 -0.65 16 10 C -0.13 -1.56 4.02 -27.88 -0.11 -1.67 16 11 C 0.51 8.27 7.70 -10.98 -0.08 8.19 16 12 O -0.56 -10.58 15.39 5.56 0.09 -10.49 16 13 N -0.60 -10.41 2.95 -172.24 -0.51 -10.92 16 14 C 0.09 1.71 6.59 -3.60 -0.02 1.69 16 15 C 0.16 3.70 5.51 -3.60 -0.02 3.68 16 16 N -0.59 -14.16 2.96 -171.80 -0.51 -14.67 16 17 C -0.26 -6.77 9.57 -15.06 -0.14 -6.91 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.11 4.91 -17.44 -0.09 0.02 16 20 N -0.90 -25.41 11.20 55.49 0.62 -24.79 16 21 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.52 6.70 -3.39 -0.02 2.50 16 26 C 0.09 1.39 6.52 -3.39 -0.02 1.37 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.67 6.07 -51.93 -0.31 0.35 16 30 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.41 1.81 9.06 45.56 0.41 2.23 16 32 H 0.08 0.91 7.59 -51.93 -0.39 0.52 16 33 H 0.09 0.94 6.02 -51.93 -0.31 0.63 16 34 H 0.09 0.99 7.72 -51.92 -0.40 0.59 16 35 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 38 H 0.10 2.57 6.00 -51.93 -0.31 2.26 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -33.44 358.86 -8.39 -41.83 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.32 Total: 1.96 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -2.64 Total: 12.02 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.66 Total: -62.10 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.15 Total: -15.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.44 -8.39 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949072342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.630 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds