Wall clock time and date at job start Tue Mar 31 2020 13:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32526 * 120.41481 * 2 1 4 4 C 1.31757 * 120.96300 * 180.31193 * 3 2 1 5 5 N 1.31791 * 121.81615 * 359.66226 * 4 3 2 6 6 C 1.32792 * 120.71646 * 0.02562 * 5 4 3 7 7 O 1.35517 * 120.51033 * 180.02562 * 6 5 4 8 8 C 1.38195 * 120.41133 * 179.69942 * 2 1 3 9 9 C 1.50707 * 120.82253 * 359.97438 * 8 2 1 10 10 C 1.52993 * 109.46827 * 269.72060 * 9 8 2 11 11 C 1.50707 * 109.46827 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00197 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99596 * 180.02562 * 11 10 9 14 14 C 1.46969 * 120.59184 * 179.97438 * 13 11 10 15 15 C 1.53365 * 108.63823 * 235.24762 * 14 13 11 16 16 N 1.46971 * 108.63406 * 310.57818 * 15 14 13 17 17 C 1.36933 * 120.58954 * 235.20080 * 16 15 14 18 18 H 1.08004 * 119.99676 * 151.84704 * 17 16 15 19 19 C 1.38804 * 120.00274 * 331.57456 * 17 16 15 20 20 N 1.31613 * 120.00257 * 342.82344 * 19 17 16 21 21 Si 1.86809 * 120.00042 * 162.81945 * 19 17 16 22 22 H 1.48504 * 109.46931 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46750 * 119.99895 * 21 19 17 24 24 H 1.48498 * 109.47076 * 239.99975 * 21 19 17 25 25 C 1.46964 * 118.81046 * 55.47559 * 16 15 14 26 26 C 1.46965 * 120.59893 * 0.02562 * 13 11 10 27 27 H 1.09004 * 109.46831 * 270.30355 * 1 2 3 28 28 H 1.08997 * 109.46968 * 30.29387 * 1 2 3 29 29 H 1.08997 * 109.47521 * 150.30353 * 1 2 3 30 30 H 1.08004 * 119.08995 * 179.68842 * 4 3 2 31 31 H 0.96705 * 114.00163 * 269.97960 * 7 6 5 32 32 H 1.09000 * 109.47084 * 149.71678 * 9 8 2 33 33 H 1.09000 * 109.46684 * 29.72041 * 9 8 2 34 34 H 1.09008 * 109.47542 * 60.00220 * 10 9 8 35 35 H 1.08996 * 109.47528 * 300.00248 * 10 9 8 36 36 H 1.09001 * 109.60759 * 115.50025 * 14 13 11 37 37 H 1.08997 * 109.60686 * 354.99512 * 14 13 11 38 38 H 1.08993 * 109.61301 * 190.83327 * 15 14 13 39 39 H 1.09004 * 109.75220 * 70.40370 * 15 14 13 40 40 H 0.97004 * 120.00510 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.60931 * 64.27031 * 25 16 15 42 42 H 1.09004 * 109.60392 * 184.78099 * 25 16 15 43 43 H 1.09002 * 109.60509 * 244.49992 * 26 13 11 44 44 H 1.09000 * 109.60856 * 4.83277 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1429 0.0000 4 6 3.4954 1.1555 -0.0062 5 7 4.2009 0.0423 -0.0059 6 6 3.5997 -1.1417 0.0001 7 8 4.3293 -2.2837 0.0008 8 6 2.2065 -1.1918 0.0063 9 6 1.4813 -2.5129 0.0138 10 6 1.2426 -2.9553 1.4587 11 6 0.5168 -4.2761 1.4662 12 8 0.2193 -4.8105 0.4190 13 7 0.1974 -4.8628 2.6368 14 6 -0.5108 -6.1504 2.6594 15 6 -1.7852 -5.9942 3.4983 16 7 -1.4320 -5.3575 4.7750 17 6 -1.7573 -5.9533 5.9642 18 1 -1.1529 -5.7739 6.8411 19 6 -2.8671 -6.7831 6.0441 20 7 -3.7893 -6.7409 5.1060 21 14 -3.0517 -7.9601 7.4830 22 1 -1.8882 -7.8143 8.3941 23 1 -4.3010 -7.6463 8.2220 24 1 -3.1130 -9.3548 6.9769 25 6 -0.7288 -4.0672 4.7523 26 6 0.5501 -4.2259 3.9135 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5091 30 1 4.0114 2.1043 -0.0111 31 1 4.5374 -2.6181 -0.8824 32 1 2.0841 -3.2612 -0.5006 33 1 0.5239 -2.4046 -0.4960 34 1 0.6396 -2.2069 1.9731 35 1 2.1999 -3.0635 1.9685 36 1 0.1292 -6.9121 3.1048 37 1 -0.7754 -6.4402 1.6426 38 1 -2.2215 -6.9750 3.6870 39 1 -2.5031 -5.3709 2.9650 40 1 -4.5651 -7.3205 5.1620 41 1 -1.3709 -3.3085 4.3050 42 1 -0.4673 -3.7754 5.7695 43 1 1.2658 -4.8503 4.4483 44 1 0.9889 -3.2462 3.7247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949072342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:17 Heat of formation + Delta-G solvation = -26.460055 kcal Electronic energy + Delta-G solvation = -27102.557548 eV Core-core repulsion = 23248.212701 eV Total energy + Delta-G solvation = -3854.344847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35364 -41.03198 -38.69179 -38.48964 -36.26355 -35.63313 -34.25076 -33.06936 -32.37523 -31.26625 -29.49158 -28.66610 -26.64386 -25.34196 -24.42668 -23.82644 -23.11924 -21.90925 -20.04796 -19.80993 -19.09351 -18.79326 -17.86018 -17.27440 -16.81505 -16.74892 -16.66128 -16.02794 -15.49778 -15.47430 -15.29149 -15.15537 -14.98164 -14.72732 -14.40037 -14.21949 -13.85564 -13.68195 -13.51877 -13.39415 -13.28655 -13.00788 -12.86736 -12.65473 -12.46624 -12.25786 -12.04318 -12.01464 -11.86495 -11.65480 -11.58585 -11.31068 -10.80628 -10.62171 -10.33365 -10.19479 -9.80710 -8.66150 -7.89058 -5.37717 -0.21906 -0.08184 1.46721 1.49717 1.59421 1.65983 2.06299 2.35819 2.50638 2.65522 3.07872 3.26036 3.33505 3.45128 3.59972 3.75611 3.87162 4.02182 4.17617 4.24190 4.26539 4.33081 4.41707 4.47485 4.50667 4.59795 4.65896 4.69918 4.73841 4.81189 4.89716 5.00529 5.06158 5.07486 5.09877 5.24757 5.42406 5.47341 5.60883 5.68662 5.90131 6.35139 6.50323 6.54157 7.03887 7.09342 7.19709 7.78981 8.31767 9.16102 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.002679 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.680003 B =10450.725317 C =10587.428368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.189 3.811 3 N -0.540 5.540 4 C 0.314 3.686 5 N -0.565 5.565 6 C 0.361 3.639 7 O -0.481 6.481 8 C -0.203 4.203 9 C -0.043 4.043 10 C -0.121 4.121 11 C 0.510 3.490 12 O -0.587 6.587 13 N -0.604 5.604 14 C 0.102 3.898 15 C 0.171 3.829 16 N -0.610 5.610 17 C -0.262 4.262 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.292 1.292 25 C 0.125 3.875 26 C 0.099 3.901 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.229 0.771 31 H 0.426 0.574 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.067 0.933 39 H -0.006 1.006 40 H 0.250 0.750 41 H 0.020 0.980 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.452 13.819 -10.859 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.045 3.955 3 N -0.257 5.257 4 C 0.027 3.973 5 N -0.290 5.290 6 C 0.174 3.826 7 O -0.291 6.291 8 C -0.209 4.209 9 C -0.082 4.082 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.335 5.335 14 C -0.022 4.022 15 C 0.044 3.956 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.221 1.221 24 H -0.219 1.219 25 C -0.001 4.001 26 C -0.025 4.025 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.245 0.755 31 H 0.289 0.711 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.012 0.988 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.625 14.278 -10.787 23.111 hybrid contribution -0.860 -1.744 0.304 1.968 sum 13.765 12.534 -10.483 21.365 Atomic orbital electron populations 1.20989 0.86265 1.05079 1.04869 1.21917 0.98673 0.86836 0.88121 1.68367 1.10702 1.30299 1.16304 1.25392 0.86378 0.96618 0.88919 1.68050 1.43782 0.99445 1.17720 1.19475 0.86961 0.85878 0.90247 1.84682 1.73398 1.35094 1.35975 1.21548 0.94045 0.98156 1.07115 1.20029 1.00917 0.91519 0.95714 1.21589 1.01890 0.93259 0.99270 1.21176 0.78830 0.87499 0.82498 1.90633 1.56983 1.66914 1.32321 1.48159 1.56489 1.22099 1.06788 1.22077 0.94679 0.85050 1.00419 1.20873 0.91727 0.98024 0.84999 1.44279 1.67265 1.19834 1.01967 1.19581 1.05979 1.23941 0.89671 0.90818 1.25834 0.94805 1.03423 1.00507 1.70176 1.10094 1.40674 1.37206 0.85213 0.77514 0.78532 0.79191 1.18787 1.22135 1.21867 1.21565 0.92197 0.87180 0.99155 1.22436 0.97542 0.99016 0.83484 0.88455 0.89001 0.88965 0.75491 0.71125 0.89912 0.89336 0.87389 0.87593 0.91967 0.90517 0.91436 0.98762 0.94046 0.96244 0.90389 0.90968 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.83 71.23 0.70 -0.91 16 2 C 0.19 3.38 6.82 42.44 0.29 3.67 16 3 N -0.54 -10.16 10.37 -188.29 -1.95 -12.11 16 4 C 0.31 5.29 12.28 180.90 2.22 7.51 16 5 N -0.56 -11.25 10.46 -312.91 -3.27 -14.53 16 6 C 0.36 6.90 7.81 84.83 0.66 7.56 16 7 O -0.48 -7.91 12.76 -88.20 -1.12 -9.04 16 8 C -0.20 -3.66 5.18 -19.59 -0.10 -3.77 16 9 C -0.04 -0.81 4.10 29.85 0.12 -0.69 16 10 C -0.12 -2.51 4.02 29.85 0.12 -2.39 16 11 C 0.51 15.57 7.70 87.66 0.67 16.24 16 12 O -0.59 -21.70 15.39 -3.02 -0.05 -21.74 16 13 N -0.60 -20.10 2.95 -817.25 -2.41 -22.51 16 14 C 0.10 4.03 6.59 86.41 0.57 4.60 16 15 C 0.17 8.18 5.51 86.41 0.48 8.65 16 16 N -0.61 -29.19 2.96 -697.46 -2.06 -31.26 16 17 C -0.26 -13.71 9.57 84.03 0.80 -12.91 16 18 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 19 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 20 N -0.94 -54.38 11.20 21.65 0.24 -54.14 16 21 Si 0.97 43.60 29.59 68.60 2.03 45.63 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 C 0.13 4.62 6.70 86.55 0.58 5.20 16 26 C 0.10 2.85 6.52 86.55 0.56 3.41 16 27 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.22 6.07 -2.39 -0.01 1.20 16 30 H 0.23 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.43 2.99 9.06 -74.05 -0.67 2.32 16 32 H 0.08 1.61 7.59 -2.39 -0.02 1.59 16 33 H 0.09 1.70 6.02 -2.39 -0.01 1.69 16 34 H 0.11 1.94 7.72 -2.38 -0.02 1.92 16 35 H 0.11 2.01 7.91 -2.39 -0.02 1.99 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.08 3.07 6.99 -2.39 -0.02 3.05 16 38 H 0.07 3.66 6.00 -2.39 -0.01 3.64 16 39 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.11 2.34 5.91 -2.39 -0.01 2.33 16 Total: -1.00 -72.61 358.86 -0.13 -72.74 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.37 Total: 13.08 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 8.10 Total: 33.88 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -9.46 Total: -134.54 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.17 Total: -30.78 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.61 -0.13 -72.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949072342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.282 kcal (2) G-P(sol) polarization free energy of solvation -72.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds