Wall clock time and date at job start Tue Mar 31 2020 12:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48502 * 109.46757 * 274.90494 * 3 2 1 5 5 H 1.48498 * 109.47386 * 34.90811 * 3 2 1 6 6 H 1.48503 * 109.47074 * 154.91003 * 3 2 1 7 7 C 1.38807 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99817 * 154.29296 * 7 2 1 9 9 N 1.36940 * 120.00345 * 334.29168 * 7 2 1 10 10 C 1.46922 * 120.64133 * 150.31333 * 9 7 2 11 11 C 1.53192 * 108.77242 * 126.35283 * 10 9 7 12 12 C 1.52993 * 109.34795 * 54.57412 * 11 10 9 13 13 C 1.52974 * 109.63741 * 298.78925 * 12 11 10 14 14 C 1.46931 * 120.64177 * 330.34047 * 9 7 2 15 15 C 1.52809 * 109.43554 * 178.99442 * 12 11 10 16 16 N 1.47154 * 108.65205 * 188.08201 * 15 12 11 17 17 C 1.34775 * 120.98512 * 230.40859 * 16 15 12 18 18 O 1.21601 * 120.00186 * 5.80070 * 17 16 15 19 19 C 1.47412 * 119.99621 * 185.52163 * 17 16 15 20 20 N 1.31612 * 125.86586 * 6.69713 * 19 17 16 21 21 C 1.33099 * 109.09422 * 179.82851 * 20 19 17 22 22 C 1.35556 * 108.35321 * 0.43958 * 21 20 19 23 23 N 1.35401 * 107.15816 * 359.73163 * 22 21 20 24 24 H 0.97003 * 126.43865 * 180.02562 * 23 22 21 25 25 C 1.47154 * 118.02469 * 50.14469 * 16 15 12 26 26 C 1.53301 * 108.36961 * 309.67413 * 25 16 15 27 27 O 1.42898 * 109.54550 * 59.05370 * 12 11 10 28 28 H 0.97002 * 119.99872 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.59204 * 6.56496 * 10 9 7 30 30 H 1.09000 * 109.70786 * 246.20919 * 10 9 7 31 31 H 1.09005 * 109.49024 * 294.61508 * 11 10 9 32 32 H 1.09002 * 109.51261 * 174.55549 * 11 10 9 33 33 H 1.08997 * 109.49635 * 181.16924 * 13 12 11 34 34 H 1.08999 * 109.49480 * 301.24815 * 13 12 11 35 35 H 1.09003 * 109.58264 * 353.43442 * 14 9 7 36 36 H 1.09002 * 109.58593 * 113.71183 * 14 9 7 37 37 H 1.09001 * 109.60856 * 68.24612 * 15 12 11 38 38 H 1.09001 * 109.50427 * 307.85870 * 15 12 11 39 39 H 1.08005 * 125.82282 * 180.17510 * 21 20 19 40 40 H 1.07993 * 126.42337 * 179.71839 * 22 21 20 41 41 H 1.09000 * 109.68860 * 69.39116 * 25 16 15 42 42 H 1.09004 * 109.68161 * 189.95659 * 25 16 15 43 43 H 1.09001 * 109.51001 * 172.28105 * 26 25 16 44 44 H 1.09003 * 109.51307 * 292.37708 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3940 2.1062 -1.3950 5 1 1.5034 2.6205 0.8012 6 1 3.5958 1.4124 0.5937 7 6 2.0103 -1.2021 0.0005 8 1 3.0101 -1.2486 -0.4052 9 7 1.4272 -2.3292 0.5155 10 6 1.7772 -3.6578 -0.0049 11 6 2.2054 -4.5486 1.1655 12 6 1.1018 -4.5586 2.2250 13 6 0.8818 -3.1393 2.7517 14 6 0.4392 -2.2330 1.5987 15 6 1.5161 -5.4666 3.3822 16 7 0.3712 -5.6190 4.2940 17 6 0.5077 -5.4153 5.6193 18 8 1.5596 -4.9990 6.0653 19 6 -0.6202 -5.6914 6.5274 20 7 -1.7622 -6.2521 6.1903 21 6 -2.5370 -6.3443 7.2686 22 6 -1.8673 -5.8156 8.3219 23 7 -0.6620 -5.4036 7.8628 24 1 0.0401 -4.9834 8.3838 25 6 -0.9285 -5.9945 3.7151 26 6 -1.2256 -5.0525 2.5427 27 8 -0.1104 -5.0482 1.6480 28 1 -0.4850 0.8401 -0.0004 29 1 2.5993 -3.5673 -0.7150 30 1 0.9123 -4.0976 -0.5015 31 1 3.1250 -4.1586 1.6019 32 1 2.3750 -5.5640 0.8072 33 1 0.1098 -3.1524 3.5210 34 1 1.8118 -2.7605 3.1756 35 1 0.3781 -1.2020 1.9470 36 1 -0.5364 -2.5535 1.2329 37 1 2.3539 -5.0187 3.9167 38 1 1.8077 -6.4420 2.9930 39 1 -3.5316 -6.7643 7.2983 40 1 -2.2275 -5.7375 9.3370 41 1 -0.8879 -7.0236 3.3580 42 1 -1.7085 -5.8980 4.4704 43 1 -2.1146 -5.3975 2.0147 44 1 -1.3946 -4.0439 2.9199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949089201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:59 Heat of formation + Delta-G solvation = 28.970732 kcal Electronic energy + Delta-G solvation = -28454.645128 eV Core-core repulsion = 24602.703940 eV Total energy + Delta-G solvation = -3851.941188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59103 -40.40562 -38.59123 -36.19237 -34.67969 -33.12164 -32.86622 -31.04608 -30.13302 -30.00600 -28.63097 -26.96775 -24.45349 -23.59117 -22.91496 -22.17206 -21.85535 -21.00297 -19.98160 -18.87486 -18.11711 -16.97250 -16.73321 -16.16543 -15.94901 -15.29576 -14.99694 -14.65350 -14.53969 -14.47119 -14.32123 -14.09421 -13.73684 -13.51578 -13.34006 -13.25323 -12.95099 -12.38760 -11.96017 -11.61451 -11.50476 -11.40280 -11.10210 -10.70474 -10.64124 -10.62823 -10.48283 -10.37416 -10.28328 -10.18436 -9.83601 -9.64243 -9.45810 -9.29499 -8.97300 -8.36791 -8.33692 -6.59824 -5.76044 -3.13147 1.08818 2.26533 2.31024 3.15175 3.18251 3.40445 3.48579 3.52560 3.93666 4.14274 4.54089 4.56240 4.84865 4.95778 5.02184 5.14812 5.26894 5.29623 5.38669 5.45888 5.50945 5.56794 5.71266 5.74680 5.87552 5.93165 6.04217 6.11714 6.22968 6.35825 6.39267 6.47035 6.52227 6.60724 6.68184 6.80060 6.88006 7.12319 7.18974 7.32665 7.44080 7.57584 7.68518 7.88261 7.93531 8.50033 9.25309 9.91298 10.51596 11.32026 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.003608 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.743649 B = 7757.886139 C = 8181.493851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.008 3.992 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.118 3.882 13 C -0.160 4.160 14 C 0.183 3.817 15 C 0.089 3.911 16 N -0.580 5.580 17 C 0.602 3.398 18 O -0.544 6.544 19 C 0.156 3.844 20 N -0.441 5.441 21 C -0.030 4.030 22 C -0.025 4.025 23 N -0.524 5.524 24 H 0.431 0.569 25 C 0.046 3.954 26 C 0.044 3.956 27 O -0.361 6.361 28 H 0.252 0.748 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.180 0.820 40 H 0.187 0.813 41 H 0.073 0.927 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 -14.560 15.693 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.192 4.192 3 Si 0.720 3.280 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.025 3.975 11 C -0.157 4.157 12 C 0.078 3.922 13 C -0.199 4.199 14 C 0.057 3.943 15 C -0.033 4.033 16 N -0.312 5.312 17 C 0.388 3.612 18 O -0.421 6.421 19 C -0.105 4.105 20 N -0.164 5.164 21 C -0.182 4.182 22 C -0.164 4.164 23 N -0.125 5.125 24 H 0.271 0.729 25 C -0.077 4.077 26 C -0.033 4.033 27 O -0.279 6.279 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.197 0.803 40 H 0.204 0.796 41 H 0.091 0.909 42 H 0.161 0.839 43 H 0.119 0.881 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.528 -14.511 14.884 21.275 hybrid contribution 0.681 1.368 1.509 2.147 sum -3.847 -13.144 16.392 21.360 Atomic orbital electron populations 1.70173 1.05438 1.25499 1.52244 1.24985 0.94932 0.98557 1.00693 0.86477 0.79697 0.84224 0.77622 1.21458 1.21627 1.20364 1.19090 0.96102 0.86535 1.37098 0.91835 1.44018 1.48720 1.00834 1.37591 1.20788 0.97815 0.86322 0.92572 1.22000 0.95856 1.00394 0.97457 1.21608 0.86084 0.92477 0.92001 1.22682 1.01490 0.95619 1.00136 1.20522 0.91067 0.97195 0.85526 1.22498 0.88850 1.00905 0.91039 1.47718 1.12029 1.66488 1.04933 1.16522 0.84761 0.78270 0.81683 1.90836 1.28251 1.46821 1.76159 1.22705 0.96874 1.07277 0.83676 1.70009 1.01147 1.16328 1.28888 1.22629 1.01483 1.05901 0.88186 1.22995 0.86731 1.04934 1.01768 1.42956 1.15610 1.44609 1.09344 0.72928 1.23445 0.86089 0.99113 0.99030 1.22961 0.90249 0.99070 0.91048 1.88007 1.17582 1.84866 1.37453 0.93801 0.92835 0.95443 0.90836 0.92125 0.93247 0.91656 0.91222 0.95763 0.88258 0.90696 0.80272 0.79596 0.90903 0.83864 0.88087 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 11.93 55.49 0.66 -25.81 16 2 C 0.01 0.23 4.65 -17.43 -0.08 0.15 16 3 Si 0.89 21.96 29.62 -169.99 -5.04 16.92 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -7.26 9.49 -15.06 -0.14 -7.41 16 8 H 0.06 1.75 7.95 -52.49 -0.42 1.34 16 9 N -0.59 -15.13 2.97 -172.31 -0.51 -15.64 16 10 C 0.15 3.29 6.28 -3.71 -0.02 3.27 16 11 C -0.12 -2.09 5.10 -26.64 -0.14 -2.22 16 12 C 0.12 2.08 0.68 -90.73 -0.06 2.02 16 13 C -0.16 -3.21 4.31 -26.64 -0.11 -3.33 16 14 C 0.18 4.48 5.15 -3.71 -0.02 4.46 16 15 C 0.09 1.37 5.27 -3.78 -0.02 1.35 16 16 N -0.58 -8.55 2.53 -173.84 -0.44 -8.99 16 17 C 0.60 9.05 7.70 -12.53 -0.10 8.96 16 18 O -0.54 -9.34 16.57 5.28 0.09 -9.26 16 19 C 0.16 1.94 7.68 -154.52 -1.19 0.75 16 20 N -0.44 -5.09 7.67 -11.26 -0.09 -5.18 16 21 C -0.03 -0.25 11.85 -17.96 -0.21 -0.46 16 22 C -0.03 -0.17 12.00 -16.93 -0.20 -0.37 16 23 N -0.52 -4.75 6.15 -10.78 -0.07 -4.82 16 24 H 0.43 3.12 8.96 -40.82 -0.37 2.75 16 25 C 0.05 0.60 6.27 -3.53 -0.02 0.58 16 26 C 0.04 0.66 6.60 37.31 0.25 0.91 16 27 O -0.36 -6.44 9.01 -35.23 -0.32 -6.76 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 30 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.95 6.16 -51.93 -0.32 0.63 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.90 6.47 -51.93 -0.34 1.57 16 36 H 0.02 0.63 7.83 -51.93 -0.41 0.23 16 37 H 0.10 1.60 7.05 -51.93 -0.37 1.23 16 38 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 39 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.14 1.82 4.29 -57.40 -0.25 1.57 16 43 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 0.96 6.29 -51.93 -0.33 0.63 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -34.13 344.83 -8.71 -42.84 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.12 Total: 2.84 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -2.07 Total: 8.65 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.44 Total: -60.43 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.23 Total: -16.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.04 Total: 16.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.13 -8.71 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949089201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.810 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds