Wall clock time and date at job start Tue Mar 31 2020 12:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48502 * 109.46757 * 274.90494 * 3 2 1 5 5 H 1.48498 * 109.47386 * 34.90811 * 3 2 1 6 6 H 1.48503 * 109.47074 * 154.91003 * 3 2 1 7 7 C 1.38807 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99817 * 154.29296 * 7 2 1 9 9 N 1.36940 * 120.00345 * 334.29168 * 7 2 1 10 10 C 1.46922 * 120.64133 * 150.31333 * 9 7 2 11 11 C 1.53192 * 108.77242 * 126.35283 * 10 9 7 12 12 C 1.52993 * 109.34795 * 54.57412 * 11 10 9 13 13 C 1.52974 * 109.63741 * 298.78925 * 12 11 10 14 14 C 1.46931 * 120.64177 * 330.34047 * 9 7 2 15 15 C 1.52809 * 109.43554 * 178.99442 * 12 11 10 16 16 N 1.47154 * 108.65205 * 188.08201 * 15 12 11 17 17 C 1.34775 * 120.98512 * 230.40859 * 16 15 12 18 18 O 1.21601 * 120.00186 * 5.80070 * 17 16 15 19 19 C 1.47412 * 119.99621 * 185.52163 * 17 16 15 20 20 N 1.31612 * 125.86586 * 6.69713 * 19 17 16 21 21 C 1.33099 * 109.09422 * 179.82851 * 20 19 17 22 22 C 1.35556 * 108.35321 * 0.43958 * 21 20 19 23 23 N 1.35401 * 107.15816 * 359.73163 * 22 21 20 24 24 H 0.97003 * 126.43865 * 180.02562 * 23 22 21 25 25 C 1.47154 * 118.02469 * 50.14469 * 16 15 12 26 26 C 1.53301 * 108.36961 * 309.67413 * 25 16 15 27 27 O 1.42898 * 109.54550 * 59.05370 * 12 11 10 28 28 H 0.97002 * 119.99872 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.59204 * 6.56496 * 10 9 7 30 30 H 1.09000 * 109.70786 * 246.20919 * 10 9 7 31 31 H 1.09005 * 109.49024 * 294.61508 * 11 10 9 32 32 H 1.09002 * 109.51261 * 174.55549 * 11 10 9 33 33 H 1.08997 * 109.49635 * 181.16924 * 13 12 11 34 34 H 1.08999 * 109.49480 * 301.24815 * 13 12 11 35 35 H 1.09003 * 109.58264 * 353.43442 * 14 9 7 36 36 H 1.09002 * 109.58593 * 113.71183 * 14 9 7 37 37 H 1.09001 * 109.60856 * 68.24612 * 15 12 11 38 38 H 1.09001 * 109.50427 * 307.85870 * 15 12 11 39 39 H 1.08005 * 125.82282 * 180.17510 * 21 20 19 40 40 H 1.07993 * 126.42337 * 179.71839 * 22 21 20 41 41 H 1.09000 * 109.68860 * 69.39116 * 25 16 15 42 42 H 1.09004 * 109.68161 * 189.95659 * 25 16 15 43 43 H 1.09001 * 109.51001 * 172.28105 * 26 25 16 44 44 H 1.09003 * 109.51307 * 292.37708 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3940 2.1062 -1.3950 5 1 1.5034 2.6205 0.8012 6 1 3.5958 1.4124 0.5937 7 6 2.0103 -1.2021 0.0005 8 1 3.0101 -1.2486 -0.4052 9 7 1.4272 -2.3292 0.5155 10 6 1.7772 -3.6578 -0.0049 11 6 2.2054 -4.5486 1.1655 12 6 1.1018 -4.5586 2.2250 13 6 0.8818 -3.1393 2.7517 14 6 0.4392 -2.2330 1.5987 15 6 1.5161 -5.4666 3.3822 16 7 0.3712 -5.6190 4.2940 17 6 0.5077 -5.4153 5.6193 18 8 1.5596 -4.9990 6.0653 19 6 -0.6202 -5.6914 6.5274 20 7 -1.7622 -6.2521 6.1903 21 6 -2.5370 -6.3443 7.2686 22 6 -1.8673 -5.8156 8.3219 23 7 -0.6620 -5.4036 7.8628 24 1 0.0401 -4.9834 8.3838 25 6 -0.9285 -5.9945 3.7151 26 6 -1.2256 -5.0525 2.5427 27 8 -0.1104 -5.0482 1.6480 28 1 -0.4850 0.8401 -0.0004 29 1 2.5993 -3.5673 -0.7150 30 1 0.9123 -4.0976 -0.5015 31 1 3.1250 -4.1586 1.6019 32 1 2.3750 -5.5640 0.8072 33 1 0.1098 -3.1524 3.5210 34 1 1.8118 -2.7605 3.1756 35 1 0.3781 -1.2020 1.9470 36 1 -0.5364 -2.5535 1.2329 37 1 2.3539 -5.0187 3.9167 38 1 1.8077 -6.4420 2.9930 39 1 -3.5316 -6.7643 7.2983 40 1 -2.2275 -5.7375 9.3370 41 1 -0.8879 -7.0236 3.3580 42 1 -1.7085 -5.8980 4.4704 43 1 -2.1146 -5.3975 2.0147 44 1 -1.3946 -4.0439 2.9199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949089201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:58 Heat of formation + Delta-G solvation = 5.780585 kcal Electronic energy + Delta-G solvation = -28455.650728 eV Core-core repulsion = 24602.703940 eV Total energy + Delta-G solvation = -3852.946788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.32320 -41.67484 -39.86515 -37.82913 -35.95124 -34.75961 -33.73846 -32.76071 -31.83003 -30.95799 -30.02851 -28.36025 -26.17045 -24.77280 -24.24773 -23.83413 -22.54487 -22.31166 -21.09209 -20.41120 -19.09690 -18.83012 -17.87397 -17.28611 -17.04771 -16.75217 -16.54183 -16.20505 -15.99984 -15.50036 -15.30327 -15.27194 -15.06358 -14.89901 -14.79079 -14.59859 -14.33443 -13.83569 -13.31003 -13.23103 -13.15347 -13.04365 -12.83730 -12.55770 -12.31750 -12.05769 -12.02333 -11.78330 -11.64148 -11.52251 -11.37533 -11.28480 -10.85260 -10.59029 -10.50486 -9.77440 -9.44897 -8.69358 -7.91350 -5.32313 0.25164 1.37835 1.43243 1.45913 1.56772 1.60111 2.24971 2.33149 2.50103 2.81000 3.09144 3.20881 3.56647 3.71739 3.82125 3.89819 3.92711 4.04643 4.27136 4.34695 4.35668 4.42515 4.46331 4.52848 4.63793 4.65235 4.67869 4.81035 4.88417 4.91908 4.97149 5.05884 5.10144 5.15193 5.27263 5.31582 5.38910 5.61716 5.66732 5.73262 6.09619 6.15245 6.31146 6.37199 6.63988 6.93095 7.11824 7.84263 8.40380 9.14905 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.003608 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.743649 B = 7757.886139 C = 8181.493851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.044 4.044 3 Si 0.958 3.042 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.271 4.271 8 H 0.066 0.934 9 N -0.606 5.606 10 C 0.148 3.852 11 C -0.109 4.109 12 C 0.123 3.877 13 C -0.143 4.143 14 C 0.197 3.803 15 C 0.097 3.903 16 N -0.587 5.587 17 C 0.598 3.402 18 O -0.576 6.576 19 C 0.110 3.890 20 N -0.452 5.452 21 C -0.048 4.048 22 C 0.007 3.993 23 N -0.518 5.518 24 H 0.438 0.562 25 C 0.057 3.943 26 C 0.041 3.959 27 O -0.377 6.377 28 H 0.250 0.750 29 H 0.057 0.943 30 H 0.014 0.986 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.000 1.000 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.209 0.791 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.153 0.847 43 H 0.123 0.877 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 -16.202 17.589 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.786 3.214 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.401 4.401 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.148 4.148 12 C 0.083 3.917 13 C -0.183 4.183 14 C 0.071 3.929 15 C -0.025 4.025 16 N -0.317 5.317 17 C 0.386 3.614 18 O -0.456 6.456 19 C -0.149 4.149 20 N -0.176 5.176 21 C -0.201 4.201 22 C -0.133 4.133 23 N -0.121 5.121 24 H 0.279 0.721 25 C -0.065 4.065 26 C -0.036 4.036 27 O -0.296 6.296 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.018 0.982 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.225 0.775 40 H 0.251 0.749 41 H 0.105 0.895 42 H 0.169 0.831 43 H 0.141 0.859 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.736 -16.178 16.767 23.776 hybrid contribution 0.608 1.830 0.980 2.163 sum -4.128 -14.348 17.747 23.192 Atomic orbital electron populations 1.70297 1.06964 1.25985 1.53907 1.25767 0.95670 1.01693 1.00926 0.85421 0.78520 0.79917 0.77585 1.20900 1.21915 1.19455 1.19447 0.96318 0.87727 1.36649 0.91595 1.44289 1.48717 1.01873 1.38109 1.20904 0.97356 0.85113 0.94309 1.21898 0.95875 1.01187 0.95832 1.21499 0.86319 0.91104 0.92789 1.22441 1.00781 0.96782 0.98278 1.20218 0.90108 0.95909 0.86669 1.22304 0.88905 1.01198 0.90116 1.47793 1.12227 1.66636 1.05092 1.16871 0.85204 0.77391 0.81924 1.90799 1.29710 1.48388 1.76708 1.22165 0.96961 1.10973 0.84767 1.69843 1.01163 1.15989 1.30558 1.23265 1.02570 1.06453 0.87768 1.23833 0.84884 1.01265 1.03282 1.43062 1.16593 1.44016 1.08395 0.72117 1.23439 0.85748 0.99035 0.98228 1.23131 0.90166 0.98578 0.91716 1.87979 1.18190 1.84684 1.38722 0.94148 0.92461 0.96762 0.90370 0.88777 0.92939 0.92577 0.94929 0.98236 0.89098 0.88450 0.77473 0.74930 0.89508 0.83069 0.85949 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 11.93 21.65 0.26 -56.79 16 2 C -0.04 -2.55 4.65 84.86 0.39 -2.16 16 3 Si 0.96 46.11 29.62 68.60 2.03 48.14 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.27 -15.55 9.49 84.03 0.80 -14.75 16 8 H 0.07 3.67 7.95 -2.91 -0.02 3.65 16 9 N -0.61 -32.00 2.97 -699.08 -2.08 -34.08 16 10 C 0.15 6.49 6.28 86.36 0.54 7.03 16 11 C -0.11 -3.75 5.10 30.66 0.16 -3.59 16 12 C 0.12 4.28 0.68 -10.87 -0.01 4.27 16 13 C -0.14 -5.93 4.31 30.65 0.13 -5.80 16 14 C 0.20 10.09 5.15 86.36 0.44 10.54 16 15 C 0.10 2.88 5.27 86.19 0.45 3.34 16 16 N -0.59 -16.87 2.53 -822.15 -2.08 -18.95 16 17 C 0.60 17.82 7.70 86.66 0.67 18.49 16 18 O -0.58 -19.96 16.57 -4.03 -0.07 -20.03 16 19 C 0.11 2.60 7.68 136.28 1.05 3.65 16 20 N -0.45 -9.58 7.67 -189.53 -1.45 -11.04 16 21 C -0.05 -0.65 11.85 83.88 0.99 0.34 16 22 C 0.01 0.07 12.00 83.52 1.00 1.07 16 23 N -0.52 -8.30 6.15 -188.03 -1.16 -9.46 16 24 H 0.44 5.59 8.96 -92.71 -0.83 4.76 16 25 C 0.06 1.44 6.27 86.36 0.54 1.98 16 26 C 0.04 1.21 6.60 72.08 0.48 1.69 16 27 O -0.38 -13.30 9.01 -148.98 -1.34 -14.64 16 28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.06 2.41 7.93 -2.38 -0.02 2.39 16 30 H 0.01 0.66 7.83 -2.39 -0.02 0.64 16 31 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.05 2.11 6.16 -2.39 -0.01 2.09 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.03 1.87 6.47 -2.39 -0.02 1.86 16 36 H 0.00 -0.02 7.83 -2.39 -0.02 -0.04 16 37 H 0.09 2.88 7.05 -2.39 -0.02 2.86 16 38 H 0.10 2.47 8.13 -2.39 -0.02 2.45 16 39 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.23 -0.11 8.06 -2.91 -0.02 -0.14 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.15 3.65 4.29 -13.20 -0.06 3.60 16 43 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.04 1.24 6.29 -2.39 -0.02 1.22 16 Total: -1.00 -77.06 344.83 1.91 -75.16 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.16 Total: 15.58 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 7.64 Total: 26.11 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -6.51 Total: -130.31 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.41 Total: -34.68 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.06 1.91 -75.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949089201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.936 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds