Wall clock time and date at job start Tue Mar 31 2020 12:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46809 * 269.99582 * 3 2 1 5 5 H 1.48499 * 109.47212 * 29.99876 * 3 2 1 6 6 H 1.48499 * 109.47038 * 150.00156 * 3 2 1 7 7 C 1.38817 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99835 * 159.84874 * 7 2 1 9 9 N 1.36935 * 119.99950 * 339.84743 * 7 2 1 10 10 C 1.47158 * 120.98499 * 149.64938 * 9 7 2 11 11 C 1.53298 * 108.37136 * 129.38409 * 10 9 7 12 12 O 1.42966 * 109.22861 * 52.35473 * 11 10 9 13 13 C 1.42907 * 114.20314 * 297.49874 * 12 11 10 14 14 C 1.52981 * 109.56223 * 302.52927 * 13 12 11 15 15 C 1.53192 * 109.34766 * 300.95326 * 14 13 12 16 16 N 1.46927 * 108.78083 * 305.43225 * 15 14 13 17 17 C 1.34771 * 120.64331 * 233.64725 * 16 15 14 18 18 O 1.21569 * 120.00082 * 6.37810 * 17 16 15 19 19 C 1.47714 * 119.99861 * 186.36837 * 17 16 15 20 20 C 1.41504 * 126.51846 * 186.99857 * 19 17 16 21 21 C 1.35363 * 105.50444 * 180.02562 * 20 19 17 22 22 N 1.35040 * 107.22743 * 0.02562 * 21 20 19 23 23 H 0.96999 * 124.88247 * 180.02562 * 22 21 20 24 24 N 1.28471 * 110.22962 * 359.97438 * 22 21 20 25 25 C 1.46934 * 118.71184 * 53.92631 * 16 15 14 26 26 C 1.52992 * 109.54339 * 182.22523 * 13 12 11 27 27 C 1.47156 * 120.98769 * 329.62587 * 9 7 2 28 28 H 0.96991 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.68543 * 249.10473 * 10 9 7 30 30 H 1.09000 * 109.68521 * 9.66847 * 10 9 7 31 31 H 1.09004 * 109.51380 * 172.27596 * 11 10 9 32 32 H 1.09005 * 109.51162 * 292.42492 * 11 10 9 33 33 H 1.09000 * 109.48845 * 180.99720 * 14 13 12 34 34 H 1.08998 * 109.51435 * 60.93521 * 14 13 12 35 35 H 1.09004 * 109.58645 * 185.63837 * 15 14 13 36 36 H 1.09008 * 109.70127 * 65.29143 * 15 14 13 37 37 H 1.08005 * 127.24538 * 0.02562 * 20 19 17 38 38 H 1.07998 * 126.38312 * 179.73502 * 21 20 19 39 39 H 1.09000 * 109.59241 * 65.85109 * 25 16 15 40 40 H 1.08996 * 109.58842 * 186.28018 * 25 16 15 41 41 H 1.09008 * 109.48964 * 179.00348 * 26 13 12 42 42 H 1.09006 * 109.49584 * 299.05496 * 26 13 12 43 43 H 1.09000 * 109.67590 * 110.76975 * 27 9 7 44 44 H 1.08999 * 109.70519 * 350.24255 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0406 -1.2309 -0.3217 9 7 1.3884 -2.3516 0.4096 10 6 1.7682 -3.6587 -0.1497 11 6 2.0274 -4.6245 1.0121 12 8 0.9012 -4.6147 1.8928 13 6 0.6481 -3.3491 2.5062 14 6 1.8881 -2.8979 3.2802 15 6 2.2305 -3.9446 4.3450 16 7 1.0451 -4.1724 5.1827 17 6 1.1197 -4.0598 6.5237 18 8 2.1414 -3.6553 7.0438 19 6 -0.0400 -4.4277 7.3613 20 6 -0.1645 -4.2362 8.7578 21 6 -1.3854 -4.7227 9.0822 22 7 -1.9507 -5.1766 7.9430 23 1 -2.8312 -5.5792 7.8827 24 7 -1.1551 -4.9975 6.9503 25 6 -0.2217 -4.5313 4.5306 26 6 -0.5388 -3.4726 3.4636 27 6 0.3210 -2.3165 1.4220 28 1 -0.4850 0.8399 -0.0004 29 1 0.9588 -4.0411 -0.7715 30 1 2.6731 -3.5530 -0.7481 31 1 2.1759 -5.6316 0.6223 32 1 2.9178 -4.3090 1.5561 33 1 1.6878 -1.9409 3.7621 34 1 2.7272 -2.7903 2.5928 35 1 3.0511 -3.5814 4.9639 36 1 2.5219 -4.8778 3.8627 37 1 0.5616 -3.7949 9.4245 38 1 -1.8234 -4.7478 10.0691 39 1 -0.1265 -5.5103 4.0610 40 1 -1.0203 -4.5556 5.2720 41 1 -0.7199 -2.5111 3.9442 42 1 -1.4260 -3.7735 2.9062 43 1 -0.6338 -2.5622 0.9572 44 1 0.2681 -1.3224 1.8659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949307107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:23 Heat of formation + Delta-G solvation = 42.239223 kcal Electronic energy + Delta-G solvation = -28426.792095 eV Core-core repulsion = 24575.426272 eV Total energy + Delta-G solvation = -3851.365823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.84262 -40.06078 -38.64087 -36.00580 -34.31350 -32.58529 -31.96213 -31.26778 -31.14848 -30.32447 -28.23953 -26.56414 -24.59888 -23.28691 -23.22791 -22.36772 -21.81273 -20.72019 -19.53105 -18.66273 -18.27429 -16.97878 -16.77413 -15.95499 -15.74295 -15.43602 -14.88271 -14.52844 -14.36021 -14.29784 -13.92188 -13.73633 -13.58348 -13.52428 -13.21038 -13.01991 -12.74137 -12.55570 -11.89705 -11.74486 -11.49911 -11.19522 -11.00265 -10.78766 -10.75703 -10.58189 -10.41989 -10.27077 -10.13803 -9.97630 -9.80360 -9.58443 -9.42628 -9.23683 -8.94260 -8.47876 -8.30428 -6.64540 -5.82712 -3.26742 1.45448 1.96765 2.61195 3.21832 3.35704 3.43612 3.44920 3.46451 4.28049 4.38905 4.49262 4.61132 4.89742 5.19462 5.25390 5.37029 5.41238 5.48401 5.51405 5.56061 5.58941 5.72325 5.85614 5.90406 5.96536 6.02377 6.06726 6.17332 6.26938 6.30665 6.37016 6.44670 6.58473 6.62572 6.76290 6.76652 6.85829 6.98163 7.07880 7.45071 7.53745 7.71995 7.77076 8.00216 8.30469 8.38552 9.14022 9.77670 10.38124 11.24875 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.003713 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.857252 B = 7539.636182 C = 7952.061183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.009 3.991 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.381 6.381 13 C 0.096 3.904 14 C -0.145 4.145 15 C 0.117 3.883 16 N -0.590 5.590 17 C 0.597 3.403 18 O -0.542 6.542 19 C -0.002 4.002 20 C -0.181 4.181 21 C -0.014 4.014 22 N -0.389 5.389 23 H 0.445 0.555 24 N -0.256 5.256 25 C 0.093 3.907 26 C -0.115 4.115 27 C 0.162 3.838 28 H 0.254 0.746 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.028 0.972 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -11.799 15.630 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.190 4.190 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.314 5.314 10 C -0.016 4.016 11 C -0.033 4.033 12 O -0.300 6.300 13 C 0.055 3.945 14 C -0.184 4.184 15 C -0.005 4.005 16 N -0.321 5.321 17 C 0.383 3.617 18 O -0.418 6.418 19 C -0.163 4.163 20 C -0.209 4.209 21 C -0.159 4.159 22 N -0.102 5.102 23 H 0.289 0.711 24 N -0.092 5.092 25 C -0.030 4.030 26 C -0.154 4.154 27 C 0.036 3.964 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.180 0.820 38 H 0.201 0.799 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.046 0.954 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.881 -11.969 14.969 19.778 hybrid contribution 0.320 1.263 0.424 1.370 sum -4.561 -10.706 15.393 19.297 Atomic orbital electron populations 1.70068 1.05382 1.25678 1.52775 1.25076 0.95132 0.98536 1.00297 0.86395 0.79452 0.83761 0.77785 1.21316 1.21503 1.20301 1.19075 0.93534 0.85085 1.41102 0.91753 1.44003 1.42745 1.01473 1.43217 1.21596 0.98588 0.87576 0.93844 1.23021 0.88866 0.99334 0.92055 1.87779 1.49224 1.31822 1.61182 1.22127 0.93487 0.85717 0.93131 1.22313 1.00476 0.98299 0.97280 1.21652 0.87241 0.99409 0.92196 1.47971 1.12088 1.67238 1.04852 1.17001 0.85375 0.77871 0.81443 1.90766 1.30862 1.47223 1.72962 1.22080 0.94302 1.05628 0.94284 1.21810 0.97988 1.06579 0.94522 1.22936 0.95862 1.03896 0.93208 1.43583 1.16884 1.45057 1.04629 0.71071 1.73480 1.02259 1.18762 1.14712 1.22496 0.85805 0.98200 0.96486 1.21918 0.97972 0.99534 0.95930 1.21250 0.90664 0.96845 0.87678 0.93601 0.95834 0.92177 0.90349 0.93532 0.91137 0.89164 0.89521 0.91307 0.81997 0.79885 0.90967 0.86281 0.90712 0.90277 0.95430 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.68 55.49 0.65 -25.24 16 2 C 0.01 0.26 4.82 -17.43 -0.08 0.17 16 3 Si 0.90 21.59 29.60 -169.99 -5.03 16.55 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.72 7.91 -52.49 -0.42 1.30 16 9 N -0.59 -14.63 2.53 -171.84 -0.43 -15.06 16 10 C 0.11 2.32 6.73 -3.53 -0.02 2.29 16 11 C 0.05 0.81 6.60 37.31 0.25 1.05 16 12 O -0.38 -7.17 9.00 -35.23 -0.32 -7.48 16 13 C 0.10 1.83 0.68 -90.50 -0.06 1.77 16 14 C -0.15 -2.69 4.33 -26.64 -0.12 -2.81 16 15 C 0.12 1.93 6.20 -3.71 -0.02 1.91 16 16 N -0.59 -9.48 2.97 -173.65 -0.51 -10.00 16 17 C 0.60 9.87 7.69 -12.39 -0.10 9.77 16 18 O -0.54 -10.30 16.35 5.31 0.09 -10.21 16 19 C 0.00 -0.03 6.83 -82.76 -0.57 -0.60 16 20 C -0.18 -1.94 10.81 -39.36 -0.43 -2.37 16 21 C -0.01 -0.10 12.02 -17.17 -0.21 -0.31 16 22 N -0.39 -2.87 6.83 30.47 0.21 -2.67 16 23 H 0.45 1.52 8.96 -190.44 -1.71 -0.19 16 24 N -0.26 -2.94 8.70 33.42 0.29 -2.65 16 25 C 0.09 1.38 5.92 -3.48 -0.02 1.36 16 26 C -0.11 -1.90 5.12 -26.41 -0.14 -2.03 16 27 C 0.16 3.81 4.10 -3.55 -0.01 3.79 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.81 6.29 -51.93 -0.33 0.49 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.79 6.16 -51.93 -0.32 1.47 16 35 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 36 H 0.07 1.10 7.83 -51.92 -0.41 0.69 16 37 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 40 H 0.12 1.62 4.13 -74.25 -0.31 1.32 16 41 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 2.08 6.57 -51.93 -0.34 1.74 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -33.74 344.32 -9.07 -42.81 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.52 Total: 1.89 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.67 Total: 6.86 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.20 Total: -55.61 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.23 Total: -17.70 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.74 -9.07 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949307107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.050 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds