Wall clock time and date at job start Tue Mar 31 2020 12:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46809 * 269.99582 * 3 2 1 5 5 H 1.48499 * 109.47212 * 29.99876 * 3 2 1 6 6 H 1.48499 * 109.47038 * 150.00156 * 3 2 1 7 7 C 1.38817 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99835 * 159.84874 * 7 2 1 9 9 N 1.36935 * 119.99950 * 339.84743 * 7 2 1 10 10 C 1.47158 * 120.98499 * 149.64938 * 9 7 2 11 11 C 1.53298 * 108.37136 * 129.38409 * 10 9 7 12 12 O 1.42966 * 109.22861 * 52.35473 * 11 10 9 13 13 C 1.42907 * 114.20314 * 297.49874 * 12 11 10 14 14 C 1.52981 * 109.56223 * 302.52927 * 13 12 11 15 15 C 1.53192 * 109.34766 * 300.95326 * 14 13 12 16 16 N 1.46927 * 108.78083 * 305.43225 * 15 14 13 17 17 C 1.34771 * 120.64331 * 233.64725 * 16 15 14 18 18 O 1.21569 * 120.00082 * 6.37810 * 17 16 15 19 19 C 1.47714 * 119.99861 * 186.36837 * 17 16 15 20 20 C 1.41504 * 126.51846 * 186.99857 * 19 17 16 21 21 C 1.35363 * 105.50444 * 180.02562 * 20 19 17 22 22 N 1.35040 * 107.22743 * 0.02562 * 21 20 19 23 23 H 0.96999 * 124.88247 * 180.02562 * 22 21 20 24 24 N 1.28471 * 110.22962 * 359.97438 * 22 21 20 25 25 C 1.46934 * 118.71184 * 53.92631 * 16 15 14 26 26 C 1.52992 * 109.54339 * 182.22523 * 13 12 11 27 27 C 1.47156 * 120.98769 * 329.62587 * 9 7 2 28 28 H 0.96991 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.68543 * 249.10473 * 10 9 7 30 30 H 1.09000 * 109.68521 * 9.66847 * 10 9 7 31 31 H 1.09004 * 109.51380 * 172.27596 * 11 10 9 32 32 H 1.09005 * 109.51162 * 292.42492 * 11 10 9 33 33 H 1.09000 * 109.48845 * 180.99720 * 14 13 12 34 34 H 1.08998 * 109.51435 * 60.93521 * 14 13 12 35 35 H 1.09004 * 109.58645 * 185.63837 * 15 14 13 36 36 H 1.09008 * 109.70127 * 65.29143 * 15 14 13 37 37 H 1.08005 * 127.24538 * 0.02562 * 20 19 17 38 38 H 1.07998 * 126.38312 * 179.73502 * 21 20 19 39 39 H 1.09000 * 109.59241 * 65.85109 * 25 16 15 40 40 H 1.08996 * 109.58842 * 186.28018 * 25 16 15 41 41 H 1.09008 * 109.48964 * 179.00348 * 26 13 12 42 42 H 1.09006 * 109.49584 * 299.05496 * 26 13 12 43 43 H 1.09000 * 109.67590 * 110.76975 * 27 9 7 44 44 H 1.08999 * 109.70519 * 350.24255 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0406 -1.2309 -0.3217 9 7 1.3884 -2.3516 0.4096 10 6 1.7682 -3.6587 -0.1497 11 6 2.0274 -4.6245 1.0121 12 8 0.9012 -4.6147 1.8928 13 6 0.6481 -3.3491 2.5062 14 6 1.8881 -2.8979 3.2802 15 6 2.2305 -3.9446 4.3450 16 7 1.0451 -4.1724 5.1827 17 6 1.1197 -4.0598 6.5237 18 8 2.1414 -3.6553 7.0438 19 6 -0.0400 -4.4277 7.3613 20 6 -0.1645 -4.2362 8.7578 21 6 -1.3854 -4.7227 9.0822 22 7 -1.9507 -5.1766 7.9430 23 1 -2.8312 -5.5792 7.8827 24 7 -1.1551 -4.9975 6.9503 25 6 -0.2217 -4.5313 4.5306 26 6 -0.5388 -3.4726 3.4636 27 6 0.3210 -2.3165 1.4220 28 1 -0.4850 0.8399 -0.0004 29 1 0.9588 -4.0411 -0.7715 30 1 2.6731 -3.5530 -0.7481 31 1 2.1759 -5.6316 0.6223 32 1 2.9178 -4.3090 1.5561 33 1 1.6878 -1.9409 3.7621 34 1 2.7272 -2.7903 2.5928 35 1 3.0511 -3.5814 4.9639 36 1 2.5219 -4.8778 3.8627 37 1 0.5616 -3.7949 9.4245 38 1 -1.8234 -4.7478 10.0691 39 1 -0.1265 -5.5103 4.0610 40 1 -1.0203 -4.5556 5.2720 41 1 -0.7199 -2.5111 3.9442 42 1 -1.4260 -3.7735 2.9062 43 1 -0.6338 -2.5622 0.9572 44 1 0.2681 -1.3224 1.8659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949307107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:22 Heat of formation + Delta-G solvation = 18.805945 kcal Electronic energy + Delta-G solvation = -28427.808238 eV Core-core repulsion = 24575.426272 eV Total energy + Delta-G solvation = -3852.381966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60662 -41.48525 -40.06677 -37.45459 -36.14941 -33.90283 -33.25387 -33.03973 -32.14051 -31.37379 -29.83040 -28.35737 -25.98479 -24.93275 -24.70754 -23.64847 -22.59939 -22.25387 -20.75631 -19.98481 -19.23969 -18.75725 -18.09760 -17.19881 -17.01991 -16.88767 -16.35215 -16.15481 -15.83546 -15.71065 -15.37510 -15.31347 -14.87804 -14.67596 -14.61860 -14.38925 -14.03863 -13.86682 -13.40688 -13.25279 -13.17713 -12.78781 -12.71539 -12.46257 -12.41519 -12.21693 -12.18678 -11.95809 -11.72010 -11.45146 -11.22106 -10.80050 -10.68888 -10.45534 -10.39753 -10.10242 -9.64091 -8.66589 -7.91792 -5.39460 0.50177 1.27202 1.42253 1.45292 1.54397 1.80527 2.24327 2.34010 2.46197 2.89582 3.21154 3.34771 3.54691 3.76192 3.94802 3.97678 4.02471 4.14989 4.21894 4.32567 4.37720 4.44911 4.55552 4.56999 4.68879 4.77217 4.80067 4.81742 4.87006 4.92903 5.00137 5.01474 5.06218 5.12736 5.23904 5.31965 5.37016 5.48719 5.60831 5.62730 6.21248 6.31432 6.38129 6.43305 6.86828 7.06958 7.11697 7.75870 8.32774 9.13152 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.003713 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.857252 B = 7539.636182 C = 7952.061183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.959 3.041 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.105 3.895 11 C 0.051 3.949 12 O -0.379 6.379 13 C 0.108 3.892 14 C -0.135 4.135 15 C 0.126 3.874 16 N -0.594 5.594 17 C 0.592 3.408 18 O -0.577 6.577 19 C -0.037 4.037 20 C -0.209 4.209 21 C 0.021 3.979 22 N -0.367 5.367 23 H 0.465 0.535 24 N -0.271 5.271 25 C 0.105 3.895 26 C -0.112 4.112 27 C 0.173 3.827 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.162 0.838 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.067 0.933 42 H 0.086 0.914 43 H -0.002 1.002 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 -13.557 17.529 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.238 4.238 3 Si 0.787 3.213 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.332 5.332 10 C -0.020 4.020 11 C -0.026 4.026 12 O -0.298 6.298 13 C 0.067 3.933 14 C -0.173 4.173 15 C 0.004 3.996 16 N -0.325 5.325 17 C 0.380 3.620 18 O -0.456 6.456 19 C -0.196 4.196 20 C -0.237 4.237 21 C -0.124 4.124 22 N -0.083 5.083 23 H 0.313 0.687 24 N -0.109 5.109 25 C -0.017 4.017 26 C -0.151 4.151 27 C 0.046 3.954 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.179 0.821 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.016 0.984 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.533 -13.769 16.852 22.454 hybrid contribution 0.450 1.752 -0.166 1.817 sum -5.083 -12.017 16.686 21.181 Atomic orbital electron populations 1.70201 1.06771 1.26001 1.54472 1.25794 0.95829 1.01492 1.00690 0.85416 0.78318 0.79863 0.77726 1.20857 1.21934 1.19529 1.19398 0.93781 0.86226 1.40198 0.91552 1.44262 1.42671 1.02365 1.43930 1.21786 0.98432 0.86550 0.95269 1.23078 0.88594 1.00386 0.90566 1.87790 1.49798 1.31003 1.61192 1.21891 0.94746 0.84622 0.92038 1.22152 0.99588 0.98198 0.97396 1.21488 0.87593 0.98998 0.91552 1.48046 1.12172 1.67257 1.05046 1.17468 0.85989 0.76975 0.81517 1.90728 1.32505 1.48837 1.73545 1.21780 0.94388 1.08254 0.95162 1.22034 0.99978 1.08242 0.93447 1.23565 0.93983 1.00308 0.94521 1.43678 1.17073 1.43463 1.04108 0.68662 1.73244 1.02164 1.19143 1.16303 1.22499 0.85855 0.97251 0.96123 1.21908 0.97104 1.00096 0.95988 1.21043 0.89342 0.96543 0.88434 0.94063 0.96805 0.91375 0.86528 0.92899 0.92993 0.90528 0.90046 0.90127 0.82082 0.74846 0.90545 0.84558 0.91401 0.89563 0.98382 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 11.68 21.65 0.25 -55.36 16 2 C -0.04 -2.34 4.82 84.86 0.41 -1.93 16 3 Si 0.96 45.33 29.60 68.60 2.03 47.36 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.27 -14.70 9.58 84.03 0.80 -13.89 16 8 H 0.07 3.57 7.91 -2.91 -0.02 3.55 16 9 N -0.61 -30.79 2.53 -697.58 -1.76 -32.55 16 10 C 0.10 4.38 6.73 86.35 0.58 4.96 16 11 C 0.05 1.73 6.60 72.08 0.48 2.21 16 12 O -0.38 -13.81 9.00 -148.98 -1.34 -15.15 16 13 C 0.11 4.16 0.68 -10.72 -0.01 4.15 16 14 C -0.13 -5.08 4.33 30.65 0.13 -4.95 16 15 C 0.13 4.15 6.20 86.36 0.54 4.69 16 16 N -0.59 -18.90 2.97 -821.59 -2.44 -21.34 16 17 C 0.59 19.58 7.69 86.75 0.67 20.25 16 18 O -0.58 -22.40 16.35 -3.93 -0.06 -22.46 16 19 C -0.04 -0.97 6.83 42.46 0.29 -0.68 16 20 C -0.21 -4.08 10.81 22.41 0.24 -3.83 16 21 C 0.02 0.21 12.02 83.54 1.00 1.21 16 22 N -0.37 -4.05 6.83 -57.51 -0.39 -4.44 16 23 H 0.46 1.15 8.96 -219.99 -1.97 -0.82 16 24 N -0.27 -5.59 8.70 -48.17 -0.42 -6.01 16 25 C 0.11 3.00 5.92 86.51 0.51 3.51 16 26 C -0.11 -3.71 5.12 30.80 0.16 -3.55 16 27 C 0.17 8.44 4.10 86.34 0.35 8.79 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 31 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.05 1.75 6.29 -2.38 -0.01 1.74 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 3.08 6.16 -2.39 -0.01 3.07 16 35 H 0.08 2.79 7.00 -2.39 -0.02 2.77 16 36 H 0.08 2.47 7.83 -2.38 -0.02 2.45 16 37 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.24 -0.20 8.06 -2.91 -0.02 -0.22 16 39 H 0.08 2.15 7.82 -2.39 -0.02 2.13 16 40 H 0.14 3.50 4.13 -31.26 -0.13 3.37 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.05 2.57 6.57 -2.39 -0.02 2.56 16 Total: -1.00 -76.48 344.32 0.97 -75.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -1.06 Total: 13.50 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.16 Total: 20.94 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -4.76 Total: -119.70 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.41 Total: -37.61 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.48 0.97 -75.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949307107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.315 kcal (2) G-P(sol) polarization free energy of solvation -76.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds