Wall clock time and date at job start Tue Mar 31 2020 12:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99607 * 2 1 4 4 H 1.48502 * 109.46810 * 269.99738 * 3 2 1 5 5 H 1.48496 * 109.47119 * 29.99642 * 3 2 1 6 6 H 1.48500 * 109.47222 * 150.00167 * 3 2 1 7 7 C 1.38815 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99744 * 164.30298 * 7 2 1 9 9 N 1.36931 * 120.00077 * 344.30344 * 7 2 1 10 10 C 1.47146 * 120.98864 * 151.64623 * 9 7 2 11 11 C 1.53303 * 108.37394 * 129.38776 * 10 9 7 12 12 O 1.42961 * 109.22672 * 52.35342 * 11 10 9 13 13 C 1.42896 * 114.20451 * 297.50358 * 12 11 10 14 14 C 1.53003 * 109.54700 * 182.23224 * 13 12 11 15 15 C 1.53185 * 109.34768 * 59.03712 * 14 13 12 16 16 N 1.46924 * 108.77201 * 54.58425 * 15 14 13 17 17 C 1.34776 * 120.64678 * 126.30502 * 16 15 14 18 18 O 1.21602 * 120.00516 * 174.68288 * 17 16 15 19 19 C 1.47438 * 119.99437 * 354.68596 * 17 16 15 20 20 C 1.41286 * 126.41262 * 331.71437 * 19 17 16 21 21 N 1.30454 * 108.01827 * 179.97438 * 20 19 17 22 22 N 1.39933 * 108.89848 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.74973 * 179.97438 * 22 21 20 24 24 C 1.34255 * 108.48968 * 359.74456 * 22 21 20 25 25 C 1.46935 * 118.71655 * 306.32562 * 16 15 14 26 26 C 1.52988 * 109.56119 * 302.52800 * 13 12 11 27 27 C 1.47157 * 120.98703 * 331.62829 * 9 7 2 28 28 H 0.96998 * 120.00416 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.68664 * 249.10760 * 10 9 7 30 30 H 1.09000 * 109.68574 * 9.66843 * 10 9 7 31 31 H 1.09002 * 109.51239 * 172.28016 * 11 10 9 32 32 H 1.09003 * 109.50940 * 292.37306 * 11 10 9 33 33 H 1.09004 * 109.48699 * 299.07975 * 14 13 12 34 34 H 1.08998 * 109.49563 * 179.00602 * 14 13 12 35 35 H 1.08998 * 109.59077 * 294.79674 * 15 14 13 36 36 H 1.09004 * 109.58430 * 174.36478 * 15 14 13 37 37 H 1.08000 * 125.99269 * 0.02562 * 20 19 17 38 38 H 1.08004 * 126.29267 * 180.24142 * 24 22 21 39 39 H 1.09001 * 109.58912 * 173.46047 * 25 16 15 40 40 H 1.09001 * 109.58632 * 293.73941 * 25 16 15 41 41 H 1.08999 * 109.48935 * 181.00201 * 26 13 12 42 42 H 1.08996 * 109.50713 * 60.94028 * 26 13 12 43 43 H 1.08999 * 109.68039 * 110.76362 * 27 9 7 44 44 H 1.09000 * 109.67458 * 350.22290 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0601 -1.2196 -0.2525 9 7 1.3640 -2.3658 0.3219 10 6 1.8096 -3.6563 -0.2269 11 6 1.9655 -4.6467 0.9328 12 8 0.7595 -4.6665 1.7003 13 6 0.4352 -3.4176 2.3142 14 6 -0.8373 -3.5729 3.1495 15 6 -0.6150 -4.6479 4.2179 16 7 0.5805 -4.2993 4.9976 17 6 0.5241 -4.2164 6.3417 18 8 1.5395 -4.0227 6.9821 19 6 -0.7688 -4.3607 7.0354 20 6 -2.0415 -4.0387 6.5129 21 7 -2.9326 -4.3067 7.4272 22 7 -2.2823 -4.8050 8.5616 23 1 -2.7126 -5.0815 9.3859 24 6 -0.9631 -4.8407 8.3150 25 6 1.8389 -4.0424 4.2838 26 6 1.5899 -2.9741 3.2144 27 6 0.2035 -2.3629 1.2267 28 1 -0.4851 0.8400 -0.0004 29 1 1.0681 -4.0310 -0.9325 30 1 2.7669 -3.5294 -0.7325 31 1 2.1615 -5.6431 0.5368 32 1 2.7964 -4.3371 1.5668 33 1 -1.6632 -3.8686 2.5024 34 1 -1.0741 -2.6244 3.6315 35 1 -0.4689 -5.6155 3.7380 36 1 -1.4815 -4.6919 4.8777 37 1 -2.2415 -3.6412 5.5289 38 1 -0.1948 -5.1803 8.9939 39 1 2.5920 -3.6869 4.9870 40 1 2.1852 -4.9616 3.8113 41 1 1.3340 -2.0303 3.6959 42 1 2.4902 -2.8438 2.6140 43 1 -0.6994 -2.6056 0.6663 44 1 0.0982 -1.3797 1.6853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949308094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:12 Heat of formation + Delta-G solvation = 43.367296 kcal Electronic energy + Delta-G solvation = -28468.010867 eV Core-core repulsion = 24616.693961 eV Total energy + Delta-G solvation = -3851.316906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65342 -39.99394 -38.56762 -36.07175 -34.36201 -32.62454 -32.06087 -31.25016 -31.03189 -30.02926 -28.23913 -26.55004 -24.18563 -23.58722 -23.12216 -22.22534 -21.87645 -20.68451 -19.55752 -18.77002 -18.09118 -16.85070 -16.42429 -15.69092 -15.53483 -15.39718 -15.11130 -14.68326 -14.47216 -14.36773 -14.16280 -13.61103 -13.57975 -13.49230 -13.23804 -12.85856 -12.74301 -12.16157 -11.93452 -11.78458 -11.54716 -11.32024 -10.99692 -10.92795 -10.82676 -10.66066 -10.56405 -10.26674 -10.16980 -10.04318 -9.89583 -9.72170 -9.35914 -9.03273 -8.94333 -8.52004 -8.31653 -6.67945 -5.83361 -3.28079 1.39003 1.99235 2.47265 3.16588 3.34590 3.37103 3.42281 3.44050 4.34472 4.43063 4.46230 4.58883 4.87135 5.00850 5.12937 5.17166 5.35292 5.36191 5.43609 5.47370 5.54816 5.67171 5.71651 5.85918 5.89474 5.98986 6.02535 6.08917 6.20268 6.23962 6.28450 6.41422 6.54658 6.61038 6.73044 6.81691 6.82519 6.91529 7.10572 7.23625 7.49515 7.62364 7.73040 7.97497 8.34943 8.36307 9.13402 9.75998 10.34399 11.24417 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.003785 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.197040 B = 7396.175330 C = 7834.403633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.110 3.890 11 C 0.046 3.954 12 O -0.382 6.382 13 C 0.097 3.903 14 C -0.119 4.119 15 C 0.092 3.908 16 N -0.597 5.597 17 C 0.593 3.407 18 O -0.556 6.556 19 C -0.284 4.284 20 C 0.077 3.923 21 N -0.295 5.295 22 N -0.467 5.467 23 H 0.443 0.557 24 C 0.124 3.876 25 C 0.119 3.881 26 C -0.146 4.146 27 C 0.160 3.840 28 H 0.254 0.746 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.203 0.797 38 H 0.189 0.811 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.027 0.973 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 -11.679 13.529 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C -0.016 4.016 11 C -0.032 4.032 12 O -0.301 6.301 13 C 0.056 3.944 14 C -0.158 4.158 15 C -0.031 4.031 16 N -0.329 5.329 17 C 0.381 3.619 18 O -0.435 6.435 19 C -0.299 4.299 20 C -0.110 4.110 21 N -0.116 5.116 22 N -0.172 5.172 23 H 0.288 0.712 24 C -0.028 4.028 25 C -0.002 4.002 26 C -0.185 4.185 27 C 0.034 3.966 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.219 0.781 38 H 0.206 0.794 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.332 -11.560 14.127 18.760 hybrid contribution 1.185 1.031 -0.094 1.574 sum -3.147 -10.528 14.033 17.823 Atomic orbital electron populations 1.70006 1.05248 1.25597 1.53744 1.25060 0.95296 0.98370 1.00580 0.86328 0.79234 0.83655 0.77757 1.21360 1.21506 1.20398 1.19134 0.92079 0.84345 1.42790 0.91635 1.44019 1.34730 1.01729 1.51121 1.21590 0.98490 0.87713 0.93851 1.23009 0.87188 0.99308 0.93701 1.87766 1.42596 1.32681 1.67058 1.22124 0.92910 0.86177 0.93207 1.21877 0.97898 0.99293 0.96732 1.22271 0.87854 0.99104 0.93859 1.47878 1.11652 1.68308 1.05086 1.17255 0.86993 0.76111 0.81520 1.90747 1.35984 1.50997 1.65773 1.20351 0.94654 1.18297 0.96603 1.24462 0.89658 0.97870 0.98999 1.77205 1.21200 1.19480 0.93727 1.46214 1.05049 1.50770 1.15179 0.71231 1.22976 0.86909 0.96487 0.96418 1.21593 0.85367 0.99023 0.94266 1.22329 1.01270 0.98157 0.96696 1.21333 0.89284 0.97018 0.88986 0.93557 0.95806 0.92210 0.90361 0.93528 0.89942 0.90308 0.90618 0.88632 0.78063 0.79390 0.89648 0.91510 0.91116 0.89224 0.95526 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 11.23 55.49 0.62 -24.80 16 2 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 3 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.73 9.63 -15.06 -0.15 -6.88 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.26 2.54 -171.85 -0.44 -14.70 16 10 C 0.11 2.24 6.73 -3.53 -0.02 2.21 16 11 C 0.05 0.79 6.60 37.31 0.25 1.03 16 12 O -0.38 -6.82 9.00 -35.23 -0.32 -7.14 16 13 C 0.10 1.73 0.68 -90.49 -0.06 1.67 16 14 C -0.12 -1.74 4.95 -26.63 -0.13 -1.87 16 15 C 0.09 1.16 5.62 -3.71 -0.02 1.14 16 16 N -0.60 -8.65 2.97 -174.03 -0.52 -9.17 16 17 C 0.59 8.88 7.63 -12.51 -0.10 8.78 16 18 O -0.56 -9.96 16.45 5.28 0.09 -9.87 16 19 C -0.28 -3.42 5.67 -105.07 -0.60 -4.02 16 20 C 0.08 0.86 9.73 -16.98 -0.17 0.70 16 21 N -0.29 -3.24 12.63 30.86 0.39 -2.85 16 22 N -0.47 -3.73 7.29 30.85 0.22 -3.50 16 23 H 0.44 1.86 8.96 -182.72 -1.64 0.22 16 24 C 0.12 1.13 11.93 -16.56 -0.20 0.93 16 25 C 0.12 1.86 6.18 -3.71 -0.02 1.84 16 26 C -0.15 -2.56 4.33 -26.64 -0.12 -2.68 16 27 C 0.16 3.62 4.07 -3.55 -0.01 3.61 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.79 6.29 -51.93 -0.33 0.46 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.99 7.82 -51.93 -0.41 0.59 16 36 H 0.10 1.02 3.11 -51.93 -0.16 0.86 16 37 H 0.20 1.96 6.03 -52.49 -0.32 1.65 16 38 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 40 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.72 6.16 -51.93 -0.32 1.40 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 2.27 6.27 -51.93 -0.33 1.94 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -33.07 342.30 -8.43 -41.50 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.19 Total: 2.58 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.43 Total: 6.53 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.28 Total: -55.02 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.23 Total: -17.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.07 -8.43 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949308094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.870 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds