Wall clock time and date at job start Tue Mar 31 2020 12:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99607 * 2 1 4 4 H 1.48502 * 109.46810 * 269.99738 * 3 2 1 5 5 H 1.48496 * 109.47119 * 29.99642 * 3 2 1 6 6 H 1.48500 * 109.47222 * 150.00167 * 3 2 1 7 7 C 1.38815 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99744 * 164.30298 * 7 2 1 9 9 N 1.36931 * 120.00077 * 344.30344 * 7 2 1 10 10 C 1.47146 * 120.98864 * 151.64623 * 9 7 2 11 11 C 1.53303 * 108.37394 * 129.38776 * 10 9 7 12 12 O 1.42961 * 109.22672 * 52.35342 * 11 10 9 13 13 C 1.42896 * 114.20451 * 297.50358 * 12 11 10 14 14 C 1.53003 * 109.54700 * 182.23224 * 13 12 11 15 15 C 1.53185 * 109.34768 * 59.03712 * 14 13 12 16 16 N 1.46924 * 108.77201 * 54.58425 * 15 14 13 17 17 C 1.34776 * 120.64678 * 126.30502 * 16 15 14 18 18 O 1.21602 * 120.00516 * 174.68288 * 17 16 15 19 19 C 1.47438 * 119.99437 * 354.68596 * 17 16 15 20 20 C 1.41286 * 126.41262 * 331.71437 * 19 17 16 21 21 N 1.30454 * 108.01827 * 179.97438 * 20 19 17 22 22 N 1.39933 * 108.89848 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.74973 * 179.97438 * 22 21 20 24 24 C 1.34255 * 108.48968 * 359.74456 * 22 21 20 25 25 C 1.46935 * 118.71655 * 306.32562 * 16 15 14 26 26 C 1.52988 * 109.56119 * 302.52800 * 13 12 11 27 27 C 1.47157 * 120.98703 * 331.62829 * 9 7 2 28 28 H 0.96998 * 120.00416 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.68664 * 249.10760 * 10 9 7 30 30 H 1.09000 * 109.68574 * 9.66843 * 10 9 7 31 31 H 1.09002 * 109.51239 * 172.28016 * 11 10 9 32 32 H 1.09003 * 109.50940 * 292.37306 * 11 10 9 33 33 H 1.09004 * 109.48699 * 299.07975 * 14 13 12 34 34 H 1.08998 * 109.49563 * 179.00602 * 14 13 12 35 35 H 1.08998 * 109.59077 * 294.79674 * 15 14 13 36 36 H 1.09004 * 109.58430 * 174.36478 * 15 14 13 37 37 H 1.08000 * 125.99269 * 0.02562 * 20 19 17 38 38 H 1.08004 * 126.29267 * 180.24142 * 24 22 21 39 39 H 1.09001 * 109.58912 * 173.46047 * 25 16 15 40 40 H 1.09001 * 109.58632 * 293.73941 * 25 16 15 41 41 H 1.08999 * 109.48935 * 181.00201 * 26 13 12 42 42 H 1.08996 * 109.50713 * 60.94028 * 26 13 12 43 43 H 1.08999 * 109.68039 * 110.76362 * 27 9 7 44 44 H 1.09000 * 109.67458 * 350.22290 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0601 -1.2196 -0.2525 9 7 1.3640 -2.3658 0.3219 10 6 1.8096 -3.6563 -0.2269 11 6 1.9655 -4.6467 0.9328 12 8 0.7595 -4.6665 1.7003 13 6 0.4352 -3.4176 2.3142 14 6 -0.8373 -3.5729 3.1495 15 6 -0.6150 -4.6479 4.2179 16 7 0.5805 -4.2993 4.9976 17 6 0.5241 -4.2164 6.3417 18 8 1.5395 -4.0227 6.9821 19 6 -0.7688 -4.3607 7.0354 20 6 -2.0415 -4.0387 6.5129 21 7 -2.9326 -4.3067 7.4272 22 7 -2.2823 -4.8050 8.5616 23 1 -2.7126 -5.0815 9.3859 24 6 -0.9631 -4.8407 8.3150 25 6 1.8389 -4.0424 4.2838 26 6 1.5899 -2.9741 3.2144 27 6 0.2035 -2.3629 1.2267 28 1 -0.4851 0.8400 -0.0004 29 1 1.0681 -4.0310 -0.9325 30 1 2.7669 -3.5294 -0.7325 31 1 2.1615 -5.6431 0.5368 32 1 2.7964 -4.3371 1.5668 33 1 -1.6632 -3.8686 2.5024 34 1 -1.0741 -2.6244 3.6315 35 1 -0.4689 -5.6155 3.7380 36 1 -1.4815 -4.6919 4.8777 37 1 -2.2415 -3.6412 5.5289 38 1 -0.1948 -5.1803 8.9939 39 1 2.5920 -3.6869 4.9870 40 1 2.1852 -4.9616 3.8113 41 1 1.3340 -2.0303 3.6959 42 1 2.4902 -2.8438 2.6140 43 1 -0.6994 -2.6056 0.6663 44 1 0.0982 -1.3797 1.6853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949308094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:12 Heat of formation + Delta-G solvation = 20.353736 kcal Electronic energy + Delta-G solvation = -28469.008809 eV Core-core repulsion = 24616.693961 eV Total energy + Delta-G solvation = -3852.314849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49735 -41.29559 -39.87126 -37.41480 -36.13130 -33.83117 -33.24380 -33.08498 -32.06278 -31.00983 -29.74764 -28.28671 -25.61362 -24.83736 -24.69938 -23.29258 -22.94177 -22.04994 -20.66552 -20.06813 -19.15992 -18.75790 -17.52439 -17.14037 -16.76143 -16.54262 -16.34743 -16.02755 -15.82182 -15.72121 -15.40303 -15.26574 -15.17134 -14.67399 -14.57007 -14.30226 -13.95067 -13.43851 -13.32763 -13.17818 -13.06702 -12.74928 -12.67991 -12.37790 -12.26783 -12.17478 -12.14952 -12.07459 -11.66925 -11.64047 -11.03521 -10.89760 -10.71124 -10.60508 -10.40822 -9.91258 -9.49402 -8.63584 -7.87573 -5.35351 0.61182 1.09830 1.44672 1.47189 1.55677 1.81106 2.09935 2.32660 2.48355 2.94697 3.26515 3.52622 3.59049 3.81426 3.90865 3.98433 4.05663 4.06843 4.18072 4.35901 4.37144 4.41428 4.48145 4.55020 4.59978 4.66737 4.74886 4.81077 4.87524 4.97141 4.99773 5.05076 5.12403 5.20345 5.26594 5.33539 5.38421 5.57274 5.62015 5.66736 6.24697 6.34054 6.45755 6.48432 6.54552 7.11416 7.21801 7.80159 8.34555 9.17264 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.003785 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.197040 B = 7396.175330 C = 7834.403633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.105 3.895 11 C 0.052 3.948 12 O -0.379 6.379 13 C 0.107 3.893 14 C -0.117 4.117 15 C 0.103 3.897 16 N -0.600 5.600 17 C 0.593 3.407 18 O -0.591 6.591 19 C -0.316 4.316 20 C 0.076 3.924 21 N -0.314 5.314 22 N -0.448 5.448 23 H 0.461 0.539 24 C 0.147 3.853 25 C 0.130 3.870 26 C -0.135 4.135 27 C 0.169 3.831 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.210 0.790 38 H 0.218 0.782 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.072 0.928 43 H -0.003 1.003 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -13.358 15.226 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.789 3.211 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.335 5.335 10 C -0.021 4.021 11 C -0.025 4.025 12 O -0.298 6.298 13 C 0.066 3.934 14 C -0.156 4.156 15 C -0.019 4.019 16 N -0.331 5.331 17 C 0.383 3.617 18 O -0.473 6.473 19 C -0.331 4.331 20 C -0.111 4.111 21 N -0.136 5.136 22 N -0.155 5.155 23 H 0.309 0.691 24 C -0.007 4.007 25 C 0.007 3.993 26 C -0.174 4.174 27 C 0.043 3.957 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.226 0.774 38 H 0.234 0.766 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.015 0.985 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.387 -13.277 15.833 21.124 hybrid contribution 1.190 1.519 -0.630 2.030 sum -3.197 -11.758 15.203 19.483 Atomic orbital electron populations 1.70153 1.06526 1.25811 1.55315 1.25743 0.95992 1.01205 1.01078 0.85381 0.78205 0.79959 0.77558 1.21170 1.21953 1.19584 1.19443 0.92356 0.85531 1.41773 0.91532 1.44282 1.34781 1.02491 1.51898 1.21777 0.98283 0.86851 0.95175 1.23041 0.87010 1.00142 0.92334 1.87781 1.43056 1.32002 1.66963 1.21919 0.94688 0.84845 0.91943 1.21883 0.96336 1.00335 0.97043 1.22296 0.88139 0.98081 0.93412 1.47930 1.11620 1.68190 1.05347 1.17633 0.87619 0.75060 0.81352 1.90721 1.37491 1.52715 1.66403 1.20235 0.93523 1.21319 0.98061 1.24542 0.89293 0.97784 0.99514 1.77171 1.21723 1.20140 0.94531 1.46235 1.04753 1.49291 1.15188 0.69067 1.23375 0.87613 0.94130 0.95561 1.21381 0.86021 0.98418 0.93434 1.22161 1.00165 0.98211 0.96860 1.21137 0.87919 0.96983 0.89612 0.94093 0.96757 0.91562 0.86705 0.93023 0.89089 0.90287 0.90188 0.86113 0.77415 0.76560 0.90398 0.90595 0.92815 0.90997 0.98472 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.37 11.23 21.65 0.24 -54.13 16 2 C -0.04 -2.45 4.96 84.86 0.42 -2.03 16 3 Si 0.96 44.61 29.58 68.60 2.03 46.64 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.26 -14.09 9.63 84.04 0.81 -13.29 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -30.01 2.54 -697.61 -1.77 -31.78 16 10 C 0.10 4.23 6.73 86.36 0.58 4.81 16 11 C 0.05 1.70 6.60 72.08 0.48 2.17 16 12 O -0.38 -13.00 9.00 -148.98 -1.34 -14.34 16 13 C 0.11 3.83 0.68 -10.71 -0.01 3.82 16 14 C -0.12 -3.35 4.95 30.66 0.15 -3.20 16 15 C 0.10 2.41 5.62 86.36 0.48 2.90 16 16 N -0.60 -16.59 2.97 -822.77 -2.44 -19.04 16 17 C 0.59 16.95 7.63 86.67 0.66 17.61 16 18 O -0.59 -20.68 16.45 -4.04 -0.07 -20.75 16 19 C -0.32 -6.95 5.67 -20.15 -0.11 -7.06 16 20 C 0.08 1.53 9.73 85.65 0.83 2.36 16 21 N -0.31 -6.12 12.63 -56.27 -0.71 -6.83 16 22 N -0.45 -5.73 7.29 -56.32 -0.41 -6.14 16 23 H 0.46 2.27 8.96 -213.43 -1.91 0.36 16 24 C 0.15 2.21 11.93 84.28 1.01 3.22 16 25 C 0.13 3.95 6.18 86.36 0.53 4.48 16 26 C -0.14 -4.78 4.33 30.65 0.13 -4.65 16 27 C 0.17 7.94 4.07 86.34 0.35 8.29 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 31 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.05 1.65 6.29 -2.39 -0.02 1.64 16 33 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 1.88 7.82 -2.39 -0.02 1.86 16 36 H 0.12 2.30 3.11 -2.38 -0.01 2.29 16 37 H 0.21 3.68 6.03 -2.91 -0.02 3.66 16 38 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.08 2.51 7.04 -2.39 -0.02 2.49 16 40 H 0.08 2.18 7.83 -2.39 -0.02 2.16 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 2.78 6.16 -2.39 -0.01 2.77 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.06 3.05 6.27 -2.39 -0.01 3.04 16 Total: -1.00 -72.99 342.30 0.98 -72.01 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.87 Total: 14.90 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 6.32 Total: 19.45 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -5.10 Total: -117.92 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.41 Total: -35.09 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.99 0.98 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949308094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.363 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds