Wall clock time and date at job start Tue Mar 31 2020 12:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00176 * 2 1 4 4 H 1.48491 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47083 * 299.99834 * 3 2 1 6 6 H 1.48503 * 109.47183 * 59.99477 * 3 2 1 7 7 C 1.38813 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 197.58668 * 7 2 1 9 9 N 1.36937 * 120.00359 * 17.59868 * 7 2 1 10 10 C 1.46955 * 120.59646 * 208.19386 * 9 7 2 11 11 C 1.53367 * 108.63932 * 235.25115 * 10 9 7 12 12 N 1.46970 * 108.63307 * 310.57158 * 11 10 9 13 13 C 1.34777 * 120.59820 * 235.20418 * 12 11 10 14 14 O 1.21277 * 119.99623 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00102 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47009 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47009 * 179.97438 * 16 15 13 18 18 N 1.31135 * 126.55486 * 89.70332 * 17 16 15 19 19 C 1.34494 * 105.61727 * 180.26285 * 18 17 16 20 20 C 1.50701 * 126.28378 * 179.97438 * 19 18 17 21 21 C 1.53006 * 117.49510 * 188.64983 * 20 19 18 22 22 C 1.53003 * 117.49214 * 120.02956 * 20 19 18 23 23 N 1.29946 * 107.42578 * 0.02562 * 19 18 17 24 24 O 1.21305 * 110.25038 * 359.97438 * 23 19 18 25 25 C 1.46966 * 118.80542 * 55.48153 * 12 11 10 26 26 C 1.46967 * 120.59253 * 28.22115 * 9 7 2 27 27 H 0.97004 * 119.99743 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.61216 * 115.49914 * 10 9 7 29 29 H 1.08998 * 109.74943 * 355.08010 * 10 9 7 30 30 H 1.09006 * 109.61405 * 190.83506 * 11 10 9 31 31 H 1.08997 * 109.75177 * 70.40242 * 11 10 9 32 32 H 1.09001 * 109.47126 * 59.99973 * 15 13 12 33 33 H 1.08999 * 109.47022 * 300.00146 * 15 13 12 34 34 H 1.08995 * 109.47529 * 59.99410 * 16 15 13 35 35 H 1.09008 * 109.46835 * 299.99693 * 16 15 13 36 36 H 1.08997 * 115.55420 * 334.36037 * 20 19 18 37 37 H 1.09001 * 117.49838 * 0.02562 * 21 20 19 38 38 H 1.08999 * 117.49468 * 145.02566 * 21 20 19 39 39 H 1.08999 * 117.49552 * 214.97671 * 22 20 19 40 40 H 1.08998 * 117.50177 * 359.97438 * 22 20 19 41 41 H 1.08992 * 109.61185 * 64.26667 * 25 12 11 42 42 H 1.09005 * 109.60603 * 184.77853 * 25 12 11 43 43 H 1.09002 * 109.60852 * 244.49570 * 26 9 7 44 44 H 1.09008 * 109.61242 * 4.83149 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0524 -1.2240 0.2832 9 7 1.3736 -2.3605 -0.3575 10 6 1.8122 -3.6537 0.1855 11 6 2.1177 -4.5981 -0.9838 12 7 0.9837 -4.5703 -1.9183 13 6 0.3576 -5.7104 -2.2714 14 8 0.7287 -6.7717 -1.8167 15 6 -0.8033 -5.6664 -3.2312 16 6 -1.3287 -7.0848 -3.4614 17 6 -2.4901 -7.0407 -4.4207 18 7 -2.4272 -7.1271 -5.7277 19 6 -3.6980 -7.0346 -6.1582 20 6 -4.1594 -7.0792 -7.5922 21 6 -5.6279 -6.7536 -7.8723 22 6 -5.1283 -8.1952 -7.9881 23 7 -4.4549 -6.8986 -5.1107 24 8 -3.7804 -6.8999 -4.1024 25 6 0.5487 -3.2776 -2.4657 26 6 0.2397 -2.3327 -1.2921 27 1 -0.4850 0.8401 -0.0004 28 1 1.0205 -4.0791 0.8022 29 1 2.7101 -3.5149 0.7877 30 1 2.2575 -5.6119 -0.6084 31 1 3.0220 -4.2696 -1.4960 32 1 -0.4746 -5.2418 -4.1798 33 1 -1.5977 -5.0486 -2.8125 34 1 -1.6574 -7.5090 -2.5128 35 1 -0.5344 -7.7029 -3.8801 36 1 -3.4238 -6.7651 -8.3327 37 1 -6.2602 -6.5068 -7.0194 38 1 -5.8587 -6.2251 -8.7972 39 1 -5.0304 -8.6150 -8.9892 40 1 -5.4317 -8.8973 -7.2115 41 1 1.3433 -2.8545 -3.0802 42 1 -0.3479 -3.4191 -3.0693 43 1 -0.6641 -2.6640 -0.7807 44 1 0.0979 -1.3183 -1.6652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951385284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:21 Heat of formation + Delta-G solvation = 86.859596 kcal Electronic energy + Delta-G solvation = -26429.050204 eV Core-core repulsion = 22579.619266 eV Total energy + Delta-G solvation = -3849.430938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.77343 -39.80142 -38.03265 -36.99086 -35.79139 -34.22315 -33.93421 -31.74003 -30.95184 -30.13714 -27.30162 -25.72696 -25.52010 -23.70360 -23.24772 -22.82908 -22.61369 -20.71049 -20.33546 -18.70860 -18.16363 -17.95236 -17.25887 -16.19902 -15.98849 -15.73958 -15.57269 -15.17445 -14.79173 -14.38342 -13.96661 -13.72765 -13.48706 -13.33176 -13.17841 -12.99687 -12.57959 -12.51297 -12.38862 -12.23144 -11.98263 -11.67160 -11.40955 -11.37691 -11.28689 -10.97928 -10.92891 -10.88629 -10.79144 -10.53278 -10.29604 -10.10385 -9.91581 -9.88718 -9.48867 -8.65763 -8.32824 -6.77415 -5.91125 -3.35297 0.92025 1.91482 2.57920 2.84761 3.18122 3.30180 3.36829 3.39010 3.40411 3.42927 3.85095 4.33529 4.39083 4.40858 4.50433 4.60783 4.74395 4.88710 5.05462 5.17239 5.19685 5.26813 5.30348 5.36724 5.51060 5.53020 5.61821 5.66406 5.71647 5.75194 5.81067 5.82427 5.88459 6.06159 6.14056 6.27216 6.36642 6.72510 6.85573 7.12727 7.39286 7.67795 7.81039 7.97607 8.30400 8.41578 9.06602 9.69195 10.25753 11.16734 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002504 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.326581 B =11177.415729 C =12237.880970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.594 5.594 13 C 0.515 3.485 14 O -0.559 6.559 15 C -0.138 4.138 16 C -0.011 4.011 17 C 0.192 3.808 18 N -0.478 5.478 19 C 0.199 3.801 20 C -0.079 4.079 21 C -0.158 4.158 22 C -0.157 4.157 23 N -0.385 5.385 24 O 0.079 5.921 25 C 0.078 3.922 26 C 0.156 3.844 27 H 0.255 0.745 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 -13.414 -13.554 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.325 5.325 13 C 0.303 3.697 14 O -0.439 6.439 15 C -0.179 4.179 16 C -0.051 4.051 17 C -0.028 4.028 18 N -0.212 5.212 19 C -0.073 4.073 20 C -0.099 4.099 21 C -0.196 4.196 22 C -0.196 4.196 23 N -0.093 5.093 24 O 0.021 5.979 25 C -0.047 4.047 26 C 0.030 3.970 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.656 -13.748 -13.715 20.874 hybrid contribution 0.462 1.103 0.112 1.202 sum -7.194 -12.645 -13.603 19.917 Atomic orbital electron populations 1.70025 1.05307 1.25664 1.53622 1.25075 0.95312 0.98588 1.00617 0.86204 0.79408 0.83697 0.77351 1.20178 1.21463 1.21657 1.19245 0.92902 0.84647 1.41641 0.91383 1.43994 1.36697 1.01619 1.49107 1.21295 0.98505 0.86996 0.92764 1.22232 0.87608 1.01182 0.91830 1.48056 1.32826 1.06779 1.44857 1.20186 0.83730 0.83807 0.82023 1.90660 1.67062 1.29468 1.56732 1.21633 0.98338 0.96844 1.01069 1.19998 0.89843 0.98795 0.96415 1.28890 0.87416 0.94721 0.91797 1.71868 1.20972 1.20709 1.07610 1.24779 0.85299 1.00344 0.96864 1.20070 0.94546 1.07282 0.87972 1.23089 0.94011 0.98382 1.04144 1.23078 1.01167 0.91930 1.03384 1.74581 1.19411 1.21557 0.93761 1.85323 1.17573 1.65122 1.29872 1.22818 0.99188 0.83876 0.98779 1.21272 0.89322 0.98675 0.87767 0.93500 0.95799 0.91472 0.89857 0.91873 0.88104 0.87933 0.87006 0.86332 0.84620 0.87758 0.87374 0.87341 0.88452 0.91563 0.91008 0.95722 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 11.20 55.49 0.62 -24.28 16 2 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 3 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.62 9.58 -15.06 -0.14 -6.76 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -13.94 2.97 -171.77 -0.51 -14.45 16 10 C 0.13 2.64 6.67 -3.60 -0.02 2.62 16 11 C 0.10 1.66 6.59 -3.60 -0.02 1.64 16 12 N -0.59 -9.94 2.94 -172.21 -0.51 -10.45 16 13 C 0.51 7.90 7.70 -10.99 -0.08 7.82 16 14 O -0.56 -9.85 15.39 5.56 0.09 -9.77 16 15 C -0.14 -1.58 4.02 -27.89 -0.11 -1.69 16 16 C -0.01 -0.12 5.13 -27.89 -0.14 -0.26 16 17 C 0.19 2.23 7.77 -13.05 -0.10 2.13 16 18 N -0.48 -6.09 11.55 -9.86 -0.11 -6.21 16 19 C 0.20 2.42 7.74 -156.37 -1.21 1.21 16 20 C -0.08 -0.71 6.33 -91.77 -0.58 -1.29 16 21 C -0.16 -1.16 10.14 -26.72 -0.27 -1.43 16 22 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16 23 N -0.39 -5.01 11.77 30.90 0.36 -4.65 16 24 O 0.08 0.99 11.31 18.09 0.20 1.20 16 25 C 0.08 1.30 6.54 -3.37 -0.02 1.28 16 26 C 0.16 3.39 5.54 -3.37 -0.02 3.38 16 27 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 30 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.07 7.90 -51.93 -0.41 0.66 16 33 H 0.10 1.12 7.73 -51.93 -0.40 0.72 16 34 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.12 1.21 8.10 -51.92 -0.42 0.79 16 36 H 0.14 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.88 7.91 -51.93 -0.41 0.47 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 0.98 5.91 -51.93 -0.31 0.68 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 2.43 5.98 -51.92 -0.31 2.12 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -31.09 364.82 -8.87 -39.96 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.39 Total: 0.19 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -3.10 Total: 7.24 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.14 Total: -60.04 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.29 Total: -8.57 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.09 -8.87 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951385284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.815 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds