Wall clock time and date at job start Tue Mar 31 2020 12:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00176 * 2 1 4 4 H 1.48491 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47083 * 299.99834 * 3 2 1 6 6 H 1.48503 * 109.47183 * 59.99477 * 3 2 1 7 7 C 1.38813 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 197.58668 * 7 2 1 9 9 N 1.36937 * 120.00359 * 17.59868 * 7 2 1 10 10 C 1.46955 * 120.59646 * 208.19386 * 9 7 2 11 11 C 1.53367 * 108.63932 * 235.25115 * 10 9 7 12 12 N 1.46970 * 108.63307 * 310.57158 * 11 10 9 13 13 C 1.34777 * 120.59820 * 235.20418 * 12 11 10 14 14 O 1.21277 * 119.99623 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00102 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47009 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47009 * 179.97438 * 16 15 13 18 18 N 1.31135 * 126.55486 * 89.70332 * 17 16 15 19 19 C 1.34494 * 105.61727 * 180.26285 * 18 17 16 20 20 C 1.50701 * 126.28378 * 179.97438 * 19 18 17 21 21 C 1.53006 * 117.49510 * 188.64983 * 20 19 18 22 22 C 1.53003 * 117.49214 * 120.02956 * 20 19 18 23 23 N 1.29946 * 107.42578 * 0.02562 * 19 18 17 24 24 O 1.21305 * 110.25038 * 359.97438 * 23 19 18 25 25 C 1.46966 * 118.80542 * 55.48153 * 12 11 10 26 26 C 1.46967 * 120.59253 * 28.22115 * 9 7 2 27 27 H 0.97004 * 119.99743 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.61216 * 115.49914 * 10 9 7 29 29 H 1.08998 * 109.74943 * 355.08010 * 10 9 7 30 30 H 1.09006 * 109.61405 * 190.83506 * 11 10 9 31 31 H 1.08997 * 109.75177 * 70.40242 * 11 10 9 32 32 H 1.09001 * 109.47126 * 59.99973 * 15 13 12 33 33 H 1.08999 * 109.47022 * 300.00146 * 15 13 12 34 34 H 1.08995 * 109.47529 * 59.99410 * 16 15 13 35 35 H 1.09008 * 109.46835 * 299.99693 * 16 15 13 36 36 H 1.08997 * 115.55420 * 334.36037 * 20 19 18 37 37 H 1.09001 * 117.49838 * 0.02562 * 21 20 19 38 38 H 1.08999 * 117.49468 * 145.02566 * 21 20 19 39 39 H 1.08999 * 117.49552 * 214.97671 * 22 20 19 40 40 H 1.08998 * 117.50177 * 359.97438 * 22 20 19 41 41 H 1.08992 * 109.61185 * 64.26667 * 25 12 11 42 42 H 1.09005 * 109.60603 * 184.77853 * 25 12 11 43 43 H 1.09002 * 109.60852 * 244.49570 * 26 9 7 44 44 H 1.09008 * 109.61242 * 4.83149 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0524 -1.2240 0.2832 9 7 1.3736 -2.3605 -0.3575 10 6 1.8122 -3.6537 0.1855 11 6 2.1177 -4.5981 -0.9838 12 7 0.9837 -4.5703 -1.9183 13 6 0.3576 -5.7104 -2.2714 14 8 0.7287 -6.7717 -1.8167 15 6 -0.8033 -5.6664 -3.2312 16 6 -1.3287 -7.0848 -3.4614 17 6 -2.4901 -7.0407 -4.4207 18 7 -2.4272 -7.1271 -5.7277 19 6 -3.6980 -7.0346 -6.1582 20 6 -4.1594 -7.0792 -7.5922 21 6 -5.6279 -6.7536 -7.8723 22 6 -5.1283 -8.1952 -7.9881 23 7 -4.4549 -6.8986 -5.1107 24 8 -3.7804 -6.8999 -4.1024 25 6 0.5487 -3.2776 -2.4657 26 6 0.2397 -2.3327 -1.2921 27 1 -0.4850 0.8401 -0.0004 28 1 1.0205 -4.0791 0.8022 29 1 2.7101 -3.5149 0.7877 30 1 2.2575 -5.6119 -0.6084 31 1 3.0220 -4.2696 -1.4960 32 1 -0.4746 -5.2418 -4.1798 33 1 -1.5977 -5.0486 -2.8125 34 1 -1.6574 -7.5090 -2.5128 35 1 -0.5344 -7.7029 -3.8801 36 1 -3.4238 -6.7651 -8.3327 37 1 -6.2602 -6.5068 -7.0194 38 1 -5.8587 -6.2251 -8.7972 39 1 -5.0304 -8.6150 -8.9892 40 1 -5.4317 -8.8973 -7.2115 41 1 1.3433 -2.8545 -3.0802 42 1 -0.3479 -3.4191 -3.0693 43 1 -0.6641 -2.6640 -0.7807 44 1 0.0979 -1.3183 -1.6652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951385284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:21 Heat of formation + Delta-G solvation = 67.612588 kcal Electronic energy + Delta-G solvation = -26429.884817 eV Core-core repulsion = 22579.619266 eV Total energy + Delta-G solvation = -3850.265551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.69164 -41.10976 -38.68616 -38.51784 -36.70656 -35.59450 -35.15099 -33.30772 -32.25214 -31.60225 -28.87277 -26.93168 -26.34726 -25.30370 -24.47151 -23.89120 -23.36604 -22.09159 -21.28071 -20.10729 -19.21903 -18.89722 -18.58631 -17.74756 -17.03863 -16.82103 -16.67148 -16.56698 -15.94664 -15.46677 -15.44488 -15.27272 -14.93990 -14.88450 -14.41612 -13.97253 -13.64668 -13.54998 -13.35601 -13.27224 -13.14097 -13.07032 -12.69519 -12.52173 -12.46790 -12.28200 -12.19166 -12.16777 -12.00239 -11.90645 -11.70260 -11.63877 -11.54302 -10.87517 -10.69097 -10.58393 -9.81072 -8.64710 -7.88681 -5.36068 0.01255 1.03872 1.47489 1.51051 1.60482 1.62206 1.66593 2.10418 2.44889 2.52075 2.73975 3.05295 3.26130 3.45916 3.60982 3.72397 3.76445 3.81614 3.93902 4.00766 4.22190 4.26758 4.30309 4.41411 4.46813 4.58259 4.61561 4.65980 4.66684 4.71524 4.78845 4.83596 4.84469 4.91215 4.97700 5.02372 5.10147 5.13205 5.25642 5.54689 5.62107 5.67323 6.36360 6.50103 7.07194 7.11643 7.15074 7.79936 8.32513 9.16399 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002504 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.326581 B =11177.415729 C =12237.880970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.131 3.869 11 C 0.106 3.894 12 N -0.602 5.602 13 C 0.517 3.483 14 O -0.580 6.580 15 C -0.130 4.130 16 C -0.003 4.003 17 C 0.199 3.801 18 N -0.495 5.495 19 C 0.195 3.805 20 C -0.101 4.101 21 C -0.152 4.152 22 C -0.145 4.145 23 N -0.405 5.405 24 O 0.069 5.931 25 C 0.095 3.905 26 C 0.160 3.840 27 H 0.251 0.749 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.149 0.851 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.002 0.998 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 -14.101 -15.430 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.018 4.018 12 N -0.334 5.334 13 C 0.307 3.693 14 O -0.461 6.461 15 C -0.171 4.171 16 C -0.042 4.042 17 C -0.021 4.021 18 N -0.229 5.229 19 C -0.076 4.076 20 C -0.120 4.120 21 C -0.190 4.190 22 C -0.184 4.184 23 N -0.115 5.115 24 O 0.014 5.986 25 C -0.029 4.029 26 C 0.034 3.966 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.107 0.893 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.020 0.980 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.376 -14.466 -15.587 22.509 hybrid contribution 0.369 1.238 0.746 1.492 sum -7.007 -13.228 -14.842 21.080 Atomic orbital electron populations 1.70165 1.06578 1.25959 1.55157 1.25767 0.96006 1.01397 1.01070 0.85231 0.78659 0.79924 0.76732 1.19183 1.21429 1.22321 1.19535 0.93108 0.85743 1.40789 0.91369 1.44271 1.36931 1.02132 1.49989 1.21368 0.98073 0.86174 0.93915 1.22012 0.88249 1.00540 0.91008 1.48114 1.32958 1.07209 1.45083 1.20723 0.83883 0.82844 0.81850 1.90655 1.67742 1.30122 1.57592 1.21605 0.96912 0.97868 1.00690 1.19977 0.89466 0.98218 0.96559 1.29048 0.87361 0.93918 0.91769 1.71885 1.21439 1.21460 1.08076 1.25381 0.85072 0.99184 0.98012 1.20352 0.95720 1.09381 0.86594 1.23154 0.92379 0.98886 1.04532 1.23169 0.99453 0.91493 1.04256 1.74582 1.19953 1.22835 0.94121 1.85298 1.17895 1.65481 1.29955 1.22563 1.00892 0.82761 0.96661 1.21128 0.88132 0.98461 0.88929 0.93949 0.97141 0.91059 0.89149 0.91183 0.86463 0.86961 0.86252 0.85870 0.83380 0.89309 0.84992 0.84779 0.89565 0.91112 0.87530 0.97982 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.49 11.20 21.65 0.24 -52.25 16 2 C -0.05 -2.48 4.90 84.86 0.42 -2.07 16 3 Si 0.97 42.91 29.59 68.60 2.03 44.94 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.26 -13.64 9.58 84.03 0.80 -12.83 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 9 N -0.61 -28.88 2.97 -697.36 -2.07 -30.95 16 10 C 0.13 5.24 6.67 86.42 0.58 5.82 16 11 C 0.11 3.55 6.59 86.41 0.57 4.12 16 12 N -0.60 -19.10 2.94 -817.16 -2.40 -21.50 16 13 C 0.52 14.78 7.70 87.66 0.67 15.45 16 14 O -0.58 -19.35 15.39 -3.02 -0.05 -19.40 16 15 C -0.13 -2.66 4.02 29.85 0.12 -2.54 16 16 C 0.00 -0.06 5.13 29.85 0.15 0.10 16 17 C 0.20 4.35 7.77 88.38 0.69 5.04 16 18 N -0.49 -11.93 11.55 -303.17 -3.50 -15.44 16 19 C 0.20 4.56 7.74 138.46 1.07 5.63 16 20 C -0.10 -1.65 6.33 -11.54 -0.07 -1.72 16 21 C -0.15 -1.95 10.14 30.60 0.31 -1.64 16 22 C -0.15 -1.76 10.23 30.60 0.31 -1.45 16 23 N -0.40 -10.31 11.77 -60.29 -0.71 -11.02 16 24 O 0.07 1.69 11.31 74.80 0.85 2.53 16 25 C 0.10 3.03 6.54 86.56 0.57 3.59 16 26 C 0.16 6.98 5.54 86.56 0.48 7.46 16 27 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 2.73 7.94 -2.39 -0.02 2.71 16 30 H 0.09 2.92 6.99 -2.38 -0.02 2.90 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.12 2.08 7.90 -2.39 -0.02 2.07 16 33 H 0.11 2.15 7.73 -2.39 -0.02 2.13 16 34 H 0.12 2.08 8.10 -2.39 -0.02 2.06 16 35 H 0.12 2.25 8.10 -2.38 -0.02 2.23 16 36 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.44 7.91 -2.39 -0.02 1.42 16 38 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.11 2.64 5.91 -2.38 -0.01 2.62 16 43 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.07 3.62 5.98 -2.38 -0.01 3.60 16 Total: -1.00 -67.19 364.82 2.07 -65.12 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.01 Total: 13.00 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 6.67 Total: 24.96 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -8.44 Total: -131.15 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.80 Total: -16.86 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.19 2.07 -65.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951385284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.736 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds