Wall clock time and date at job start Tue Mar 31 2020 12:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99972 * 2 1 4 4 H 1.48497 * 109.47294 * 239.99378 * 3 2 1 5 5 H 1.48504 * 109.46969 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47273 * 119.99282 * 3 2 1 7 7 C 1.38814 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00007 * 180.49389 * 7 2 1 9 9 N 1.36939 * 119.99925 * 0.49083 * 7 2 1 10 10 C 1.46926 * 120.64306 * 37.01792 * 9 7 2 11 11 C 1.53183 * 108.77235 * 126.38127 * 10 9 7 12 12 C 1.53043 * 109.33604 * 54.63453 * 11 10 9 13 13 C 1.53020 * 109.55023 * 298.68893 * 12 11 10 14 14 C 1.46929 * 120.63992 * 217.04509 * 9 7 2 15 15 C 1.53026 * 109.44010 * 58.70653 * 12 11 10 16 16 C 1.53197 * 109.33664 * 181.22995 * 15 12 11 17 17 N 1.46934 * 108.77762 * 305.37418 * 16 15 12 18 18 C 1.34774 * 120.64510 * 233.61448 * 17 16 15 19 19 O 1.21501 * 119.99498 * 355.81487 * 18 17 16 20 20 C 1.48273 * 119.99975 * 175.81539 * 18 17 16 21 21 C 1.47490 * 128.70962 * 186.70196 * 20 18 17 22 22 N 1.30648 * 102.72048 * 179.90695 * 21 20 18 23 23 O 1.20843 * 109.61243 * 0.36642 * 22 21 20 24 24 N 1.20903 * 115.90970 * 359.73560 * 23 22 21 25 25 C 1.46933 * 118.71119 * 53.89365 * 17 16 15 26 26 C 1.53052 * 109.38937 * 178.73228 * 12 11 10 27 27 H 0.97005 * 120.00025 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.58144 * 6.59477 * 10 9 7 29 29 H 1.08996 * 109.70374 * 246.23728 * 10 9 7 30 30 H 1.09003 * 109.49548 * 294.67515 * 11 10 9 31 31 H 1.09002 * 109.49323 * 174.59938 * 11 10 9 32 32 H 1.09000 * 109.49655 * 181.25922 * 13 12 11 33 33 H 1.09005 * 109.49675 * 301.34592 * 13 12 11 34 34 H 1.09001 * 109.59071 * 353.40222 * 14 9 7 35 35 H 1.08993 * 109.59244 * 113.68451 * 14 9 7 36 36 H 1.09001 * 109.49620 * 61.27488 * 15 12 11 37 37 H 1.08997 * 109.49221 * 301.18697 * 15 12 11 38 38 H 1.08996 * 109.58603 * 185.58913 * 16 15 12 39 39 H 1.08998 * 109.69916 * 65.23196 * 16 15 12 40 40 H 1.07999 * 128.64297 * 0.03216 * 21 20 18 41 41 H 1.09000 * 109.59048 * 65.87847 * 25 17 16 42 42 H 1.08996 * 109.58692 * 186.30729 * 25 17 16 43 43 H 1.09001 * 109.49187 * 298.68232 * 26 12 11 44 44 H 1.08998 * 109.49408 * 58.77085 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0086 9 7 1.3256 -2.3881 -0.0091 10 6 0.0828 -2.5290 -0.7799 11 6 0.2127 -3.7413 -1.7073 12 6 0.5823 -4.9747 -0.8802 13 6 1.9299 -4.7452 -0.1926 14 6 1.8194 -3.5440 0.7517 15 6 -0.4951 -5.2195 0.1786 16 6 -0.1075 -6.4363 1.0249 17 7 0.1303 -7.5779 0.1309 18 6 -0.5122 -8.7468 0.3236 19 8 -1.2385 -8.8891 1.2872 20 6 -0.3326 -9.8592 -0.6402 21 6 -1.0341 -11.1555 -0.6937 22 7 -0.4888 -11.7351 -1.7299 23 8 0.3478 -11.0063 -2.2087 24 7 0.4965 -9.9398 -1.6589 25 6 1.0867 -7.4222 -0.9737 26 6 0.6814 -6.1931 -1.8012 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0824 -1.6303 -1.3742 29 1 -0.7564 -2.6771 -0.1003 30 1 0.9913 -3.5522 -2.4463 31 1 -0.7364 -3.9145 -2.2147 32 1 2.2029 -5.6327 0.3782 33 1 2.6932 -4.5472 -0.9452 34 1 2.8003 -3.3153 1.1684 35 1 1.1242 -3.7741 1.5591 36 1 -1.4507 -5.4068 -0.3113 37 1 -0.5805 -4.3425 0.8202 38 1 -0.9172 -6.6747 1.7144 39 1 0.7998 -6.2181 1.5881 40 1 -1.8076 -11.5313 -0.0404 41 1 2.0898 -7.2807 -0.5713 42 1 1.0655 -8.3116 -1.6034 43 1 -0.2847 -6.3718 -2.2733 44 1 1.4332 -6.0087 -2.5686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957623157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:29 Heat of formation + Delta-G solvation = 116.671040 kcal Electronic energy + Delta-G solvation = -28116.845652 eV Core-core repulsion = 24268.707435 eV Total energy + Delta-G solvation = -3848.138217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.25096 -40.70184 -38.88072 -36.15396 -35.12570 -34.84470 -33.54466 -31.40463 -30.97281 -30.05940 -28.22800 -26.42170 -25.17896 -24.33028 -23.27544 -23.21417 -21.93656 -21.03549 -19.99356 -19.37709 -18.47140 -18.01494 -17.46667 -16.57911 -16.22847 -15.42461 -15.21226 -14.89167 -14.42498 -14.27855 -14.08020 -13.82618 -13.65948 -13.42272 -13.13387 -12.95874 -12.77741 -12.69480 -11.78579 -11.73636 -11.61890 -11.42590 -11.31226 -11.13570 -11.06937 -11.02133 -10.80593 -10.67704 -10.50175 -10.38719 -10.15153 -10.03597 -9.70307 -9.52304 -9.42072 -8.71448 -8.45167 -6.50351 -5.80029 -3.33642 0.40384 0.98356 2.28830 2.66193 3.07129 3.12614 3.36330 3.41727 3.42418 3.55709 4.20379 4.42298 4.46902 4.90637 4.95799 4.98292 5.00190 5.17960 5.32416 5.39155 5.42132 5.52794 5.68469 5.75325 5.80186 5.89376 5.99348 6.04964 6.06472 6.20386 6.29046 6.35684 6.47973 6.54702 6.66354 6.69784 6.83614 6.91293 6.99837 7.06390 7.41428 7.65752 7.74655 7.78704 8.08176 8.52223 9.24502 9.83212 10.44659 11.27218 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.002911 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.403036 B = 9617.787368 C = 9862.709145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.060 0.940 9 N -0.591 5.591 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.048 4.048 13 C -0.126 4.126 14 C 0.145 3.855 15 C -0.124 4.124 16 C 0.112 3.888 17 N -0.582 5.582 18 C 0.598 3.402 19 O -0.521 6.521 20 C -0.030 4.030 21 C 0.035 3.965 22 N -0.352 5.352 23 O 0.333 5.667 24 N -0.318 5.318 25 C 0.077 3.923 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.086 0.914 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.018 0.982 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.227 0.773 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -19.669 -2.838 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.048 4.048 13 C -0.165 4.165 14 C 0.019 3.981 15 C -0.162 4.162 16 C -0.009 4.009 17 N -0.314 5.314 18 C 0.382 3.618 19 O -0.396 6.396 20 C -0.195 4.195 21 C -0.150 4.150 22 N -0.075 5.075 23 O 0.111 5.889 24 N -0.042 5.042 25 C -0.045 4.045 26 C -0.159 4.159 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.244 0.756 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.567 -19.841 -3.260 20.115 hybrid contribution -0.078 1.146 0.661 1.326 sum -0.645 -18.694 -2.598 18.885 Atomic orbital electron populations 1.69912 1.05326 1.25598 1.53896 1.25335 0.95486 0.98311 0.99713 0.86384 0.78922 0.83350 0.78127 1.20956 1.21602 1.20839 1.19068 0.90043 0.83237 1.46249 0.92230 1.43914 1.26446 1.08443 1.52588 1.20809 0.87581 0.94729 0.92209 1.22259 0.99462 0.96477 0.98796 1.20408 0.95445 0.94200 0.94751 1.22158 0.95887 0.98775 0.99671 1.20940 0.97429 0.87537 0.92224 1.22058 0.98342 0.97414 0.98410 1.21899 1.02669 0.84159 0.92164 1.48047 1.41385 1.11143 1.30825 1.16608 0.80995 0.80706 0.83488 1.90829 1.38870 1.80946 1.29002 1.26364 0.97115 0.98701 0.97325 1.27727 1.01686 0.89638 0.95990 1.75076 1.03389 1.18325 1.10721 1.85113 1.41677 1.17332 1.44809 1.75252 1.18944 1.02454 1.07522 1.22698 0.92123 1.01257 0.88423 1.22078 1.01751 0.94101 0.98003 0.93512 0.89579 0.96296 0.92728 0.93630 0.93212 0.92333 0.93168 0.96390 0.92162 0.88673 0.89052 0.90292 0.75648 0.90371 0.86943 0.92077 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 10.95 55.49 0.61 -25.00 16 2 C 0.01 0.29 5.23 -17.43 -0.09 0.20 16 3 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.86 9.53 -15.06 -0.14 -7.00 16 8 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 9 N -0.59 -14.16 2.98 -172.33 -0.51 -14.67 16 10 C 0.17 3.91 4.75 -3.72 -0.02 3.89 16 11 C -0.13 -2.35 4.90 -26.61 -0.13 -2.48 16 12 C -0.05 -0.72 0.51 -154.43 -0.08 -0.80 16 13 C -0.13 -2.00 4.15 -26.62 -0.11 -2.11 16 14 C 0.15 2.86 6.04 -3.71 -0.02 2.84 16 15 C -0.12 -1.84 4.15 -26.62 -0.11 -1.95 16 16 C 0.11 1.48 5.95 -3.70 -0.02 1.45 16 17 N -0.58 -7.26 2.97 -173.45 -0.51 -7.78 16 18 C 0.60 7.61 7.72 -12.13 -0.09 7.51 16 19 O -0.52 -7.78 16.48 5.36 0.09 -7.69 16 20 C -0.03 -0.31 7.26 -80.07 -0.58 -0.90 16 21 C 0.04 0.29 12.63 -14.29 -0.18 0.11 16 22 N -0.35 -3.19 12.22 30.71 0.38 -2.81 16 23 O 0.33 3.09 11.65 27.26 0.32 3.41 16 24 N -0.32 -3.19 8.88 33.49 0.30 -2.89 16 25 C 0.08 0.88 5.89 -3.48 -0.02 0.86 16 26 C -0.12 -1.52 4.92 -26.38 -0.13 -1.65 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.09 2.25 6.22 -51.93 -0.32 1.93 16 29 H 0.02 0.45 6.67 -51.93 -0.35 0.10 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.69 4.98 -51.93 -0.26 0.43 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 35 H 0.02 0.36 6.73 -51.93 -0.35 0.01 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 1.62 4.99 -51.93 -0.26 1.37 16 38 H 0.09 1.23 7.03 -51.93 -0.37 0.87 16 39 H 0.08 1.02 6.74 -51.93 -0.35 0.67 16 40 H 0.23 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.08 0.87 6.66 -51.93 -0.35 0.52 16 42 H 0.11 1.21 3.88 -65.55 -0.25 0.95 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -29.38 335.49 -6.81 -36.19 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.77 Total: -0.14 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.73 Total: 0.00 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.25 Total: -53.15 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.41 Total: -4.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.38 -6.81 -36.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957623157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.866 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds