Wall clock time and date at job start Tue Mar 31 2020 12:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99972 * 2 1 4 4 H 1.48497 * 109.47294 * 239.99378 * 3 2 1 5 5 H 1.48504 * 109.46969 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47273 * 119.99282 * 3 2 1 7 7 C 1.38814 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00007 * 180.49389 * 7 2 1 9 9 N 1.36939 * 119.99925 * 0.49083 * 7 2 1 10 10 C 1.46926 * 120.64306 * 37.01792 * 9 7 2 11 11 C 1.53183 * 108.77235 * 126.38127 * 10 9 7 12 12 C 1.53043 * 109.33604 * 54.63453 * 11 10 9 13 13 C 1.53020 * 109.55023 * 298.68893 * 12 11 10 14 14 C 1.46929 * 120.63992 * 217.04509 * 9 7 2 15 15 C 1.53026 * 109.44010 * 58.70653 * 12 11 10 16 16 C 1.53197 * 109.33664 * 181.22995 * 15 12 11 17 17 N 1.46934 * 108.77762 * 305.37418 * 16 15 12 18 18 C 1.34774 * 120.64510 * 233.61448 * 17 16 15 19 19 O 1.21501 * 119.99498 * 355.81487 * 18 17 16 20 20 C 1.48273 * 119.99975 * 175.81539 * 18 17 16 21 21 C 1.47490 * 128.70962 * 186.70196 * 20 18 17 22 22 N 1.30648 * 102.72048 * 179.90695 * 21 20 18 23 23 O 1.20843 * 109.61243 * 0.36642 * 22 21 20 24 24 N 1.20903 * 115.90970 * 359.73560 * 23 22 21 25 25 C 1.46933 * 118.71119 * 53.89365 * 17 16 15 26 26 C 1.53052 * 109.38937 * 178.73228 * 12 11 10 27 27 H 0.97005 * 120.00025 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.58144 * 6.59477 * 10 9 7 29 29 H 1.08996 * 109.70374 * 246.23728 * 10 9 7 30 30 H 1.09003 * 109.49548 * 294.67515 * 11 10 9 31 31 H 1.09002 * 109.49323 * 174.59938 * 11 10 9 32 32 H 1.09000 * 109.49655 * 181.25922 * 13 12 11 33 33 H 1.09005 * 109.49675 * 301.34592 * 13 12 11 34 34 H 1.09001 * 109.59071 * 353.40222 * 14 9 7 35 35 H 1.08993 * 109.59244 * 113.68451 * 14 9 7 36 36 H 1.09001 * 109.49620 * 61.27488 * 15 12 11 37 37 H 1.08997 * 109.49221 * 301.18697 * 15 12 11 38 38 H 1.08996 * 109.58603 * 185.58913 * 16 15 12 39 39 H 1.08998 * 109.69916 * 65.23196 * 16 15 12 40 40 H 1.07999 * 128.64297 * 0.03216 * 21 20 18 41 41 H 1.09000 * 109.59048 * 65.87847 * 25 17 16 42 42 H 1.08996 * 109.58692 * 186.30729 * 25 17 16 43 43 H 1.09001 * 109.49187 * 298.68232 * 26 12 11 44 44 H 1.08998 * 109.49408 * 58.77085 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0086 9 7 1.3256 -2.3881 -0.0091 10 6 0.0828 -2.5290 -0.7799 11 6 0.2127 -3.7413 -1.7073 12 6 0.5823 -4.9747 -0.8802 13 6 1.9299 -4.7452 -0.1926 14 6 1.8194 -3.5440 0.7517 15 6 -0.4951 -5.2195 0.1786 16 6 -0.1075 -6.4363 1.0249 17 7 0.1303 -7.5779 0.1309 18 6 -0.5122 -8.7468 0.3236 19 8 -1.2385 -8.8891 1.2872 20 6 -0.3326 -9.8592 -0.6402 21 6 -1.0341 -11.1555 -0.6937 22 7 -0.4888 -11.7351 -1.7299 23 8 0.3478 -11.0063 -2.2087 24 7 0.4965 -9.9398 -1.6589 25 6 1.0867 -7.4222 -0.9737 26 6 0.6814 -6.1931 -1.8012 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0824 -1.6303 -1.3742 29 1 -0.7564 -2.6771 -0.1003 30 1 0.9913 -3.5522 -2.4463 31 1 -0.7364 -3.9145 -2.2147 32 1 2.2029 -5.6327 0.3782 33 1 2.6932 -4.5472 -0.9452 34 1 2.8003 -3.3153 1.1684 35 1 1.1242 -3.7741 1.5591 36 1 -1.4507 -5.4068 -0.3113 37 1 -0.5805 -4.3425 0.8202 38 1 -0.9172 -6.6747 1.7144 39 1 0.7998 -6.2181 1.5881 40 1 -1.8076 -11.5313 -0.0404 41 1 2.0898 -7.2807 -0.5713 42 1 1.0655 -8.3116 -1.6034 43 1 -0.2847 -6.3718 -2.2733 44 1 1.4332 -6.0087 -2.5686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957623157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:28 Heat of formation + Delta-G solvation = 99.592198 kcal Electronic energy + Delta-G solvation = -28117.586246 eV Core-core repulsion = 24268.707435 eV Total energy + Delta-G solvation = -3848.878811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.97314 -41.80752 -40.10868 -37.50407 -36.01358 -35.58307 -35.02213 -33.04834 -32.16682 -31.62766 -29.66923 -27.44788 -26.60715 -25.31406 -24.59472 -24.29641 -23.45372 -22.29664 -21.23273 -20.10027 -19.46276 -19.14064 -18.72569 -18.05335 -17.29879 -16.88251 -16.44150 -15.94756 -15.81093 -15.53390 -15.30892 -15.15390 -14.95306 -14.82564 -14.60013 -14.19114 -13.93543 -13.71581 -13.17348 -13.02214 -12.84980 -12.81020 -12.64394 -12.53241 -12.43729 -12.28521 -12.16485 -12.05903 -11.85625 -11.79584 -11.71995 -11.48707 -11.08642 -11.04879 -10.87928 -10.48303 -9.79229 -8.45987 -7.84499 -5.41252 -0.39695 0.31710 1.38100 1.46670 1.47963 1.54528 1.73953 2.26855 2.43879 2.50680 2.80014 3.30854 3.36813 3.70787 3.75068 3.79384 3.82838 3.85583 4.08104 4.25482 4.31093 4.43866 4.44585 4.57988 4.61551 4.72278 4.73380 4.79963 4.81336 4.94329 5.01552 5.03930 5.07553 5.17033 5.26359 5.30870 5.41689 5.49867 5.55510 5.62069 5.69258 5.88531 6.08595 6.47967 6.68769 7.21757 7.36110 7.90774 8.45079 9.19326 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.002911 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.403036 B = 9617.787368 C = 9862.709145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.266 4.266 8 H 0.060 0.940 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.119 4.119 12 C -0.043 4.043 13 C -0.112 4.112 14 C 0.141 3.859 15 C -0.116 4.116 16 C 0.120 3.880 17 N -0.584 5.584 18 C 0.600 3.400 19 O -0.547 6.547 20 C -0.046 4.046 21 C 0.052 3.948 22 N -0.359 5.359 23 O 0.339 5.661 24 N -0.317 5.317 25 C 0.082 3.918 26 C -0.113 4.113 27 H 0.249 0.751 28 H 0.045 0.955 29 H -0.001 1.001 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.255 0.745 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -21.944 -3.397 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.396 4.396 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.158 4.158 12 C -0.043 4.043 13 C -0.151 4.151 14 C 0.016 3.984 15 C -0.155 4.155 16 C -0.002 4.002 17 N -0.315 5.315 18 C 0.386 3.614 19 O -0.424 6.424 20 C -0.211 4.211 21 C -0.133 4.133 22 N -0.083 5.083 23 O 0.115 5.885 24 N -0.039 5.039 25 C -0.040 4.040 26 C -0.151 4.151 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.271 0.729 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.082 0.918 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.385 -22.128 -3.827 22.460 hybrid contribution -0.379 1.810 0.843 2.033 sum 0.006 -20.318 -2.984 20.536 Atomic orbital electron populations 1.70096 1.06630 1.25750 1.55355 1.26048 0.96244 1.01425 1.00178 0.85392 0.77610 0.79378 0.78318 1.20260 1.22076 1.20225 1.19390 0.90373 0.84579 1.45299 0.92227 1.44159 1.26475 1.08978 1.53714 1.20547 0.86784 0.95111 0.91956 1.22062 1.00053 0.95732 0.97944 1.20341 0.94983 0.94104 0.94868 1.22004 0.96220 0.97873 0.98978 1.21082 0.96833 0.87608 0.92870 1.21907 0.98350 0.97151 0.98045 1.21724 1.02813 0.83730 0.91896 1.48069 1.41607 1.10927 1.30933 1.16769 0.80265 0.80997 0.83404 1.90818 1.39885 1.81506 1.30183 1.26114 0.98401 0.99002 0.97542 1.28176 1.01258 0.88353 0.95532 1.75111 1.03647 1.18348 1.11151 1.85114 1.41698 1.17034 1.44605 1.75166 1.18695 1.02802 1.07258 1.22757 0.92142 1.01041 0.88068 1.21979 1.02464 0.92952 0.97681 0.94159 0.93630 0.98261 0.93223 0.92397 0.90323 0.92578 0.93591 0.96402 0.92221 0.91459 0.89442 0.89689 0.72942 0.89377 0.85821 0.91834 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 10.95 21.65 0.24 -54.56 16 2 C -0.04 -2.39 5.23 84.86 0.44 -1.95 16 3 Si 0.97 44.61 29.55 68.60 2.03 46.63 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.27 -14.49 9.53 84.03 0.80 -13.69 16 8 H 0.06 3.18 7.83 -2.91 -0.02 3.16 16 9 N -0.61 -29.79 2.98 -699.12 -2.08 -31.87 16 10 C 0.18 8.53 4.75 86.36 0.41 8.94 16 11 C -0.12 -4.24 4.90 30.67 0.15 -4.09 16 12 C -0.04 -1.22 0.51 -52.13 -0.03 -1.25 16 13 C -0.11 -3.35 4.15 30.67 0.13 -3.22 16 14 C 0.14 5.54 6.04 86.36 0.52 6.06 16 15 C -0.12 -3.36 4.15 30.67 0.13 -3.23 16 16 C 0.12 2.98 5.95 86.36 0.51 3.49 16 17 N -0.58 -13.20 2.97 -820.96 -2.43 -15.63 16 18 C 0.60 13.98 7.72 86.91 0.67 14.65 16 19 O -0.55 -15.44 16.48 -3.72 -0.06 -15.50 16 20 C -0.05 -0.85 7.26 44.29 0.32 -0.53 16 21 C 0.05 0.72 12.63 87.31 1.10 1.82 16 22 N -0.36 -5.51 12.22 -61.44 -0.75 -6.26 16 23 O 0.34 5.39 11.65 140.84 1.64 7.03 16 24 N -0.32 -5.48 8.88 -52.06 -0.46 -5.94 16 25 C 0.08 1.60 5.89 86.51 0.51 2.11 16 26 C -0.11 -2.50 4.92 30.82 0.15 -2.35 16 27 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 28 H 0.05 2.49 6.22 -2.39 -0.01 2.48 16 29 H 0.00 -0.03 6.67 -2.39 -0.02 -0.05 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.93 4.98 -2.39 -0.01 1.92 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 35 H 0.02 0.71 6.73 -2.39 -0.02 0.69 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.34 4.99 -2.39 -0.01 2.33 16 38 H 0.09 2.28 7.03 -2.39 -0.02 2.26 16 39 H 0.08 2.02 6.74 -2.39 -0.02 2.00 16 40 H 0.25 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.09 1.60 6.66 -2.39 -0.02 1.59 16 42 H 0.12 2.24 3.88 -27.75 -0.11 2.13 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.75 335.49 4.88 -59.86 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.94 Total: 9.47 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.83 Total: 6.77 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -5.49 Total: -114.26 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 1.58 Total: -8.47 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -64.75 4.88 -59.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957623157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.457 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds