Wall clock time and date at job start Tue Mar 31 2020 12:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31781 * 119.09286 * 2 1 4 4 C 1.32498 * 120.96096 * 179.75276 * 3 2 1 5 5 C 1.50698 * 120.41488 * 180.26093 * 4 3 2 6 6 C 1.38234 * 119.17598 * 0.51785 * 4 3 2 7 7 C 1.50693 * 120.82586 * 179.76865 * 6 4 3 8 8 C 1.50703 * 109.47115 * 269.72152 * 7 6 4 9 9 O 1.21279 * 120.00143 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99763 * 179.97438 * 8 7 6 11 11 C 1.46965 * 120.59323 * 179.97438 * 10 8 7 12 12 C 1.53374 * 108.63702 * 235.25034 * 11 10 8 13 13 N 1.46968 * 108.63080 * 310.57409 * 12 11 10 14 14 C 1.36934 * 120.58904 * 235.19759 * 13 12 11 15 15 H 1.08009 * 119.99376 * 151.84519 * 14 13 12 16 16 C 1.38804 * 120.00824 * 331.57781 * 14 13 12 17 17 N 1.31627 * 119.99593 * 342.82852 * 16 14 13 18 18 Si 1.86794 * 120.00637 * 162.82757 * 16 14 13 19 19 H 1.48504 * 109.47167 * 59.99793 * 18 16 14 20 20 H 1.48497 * 109.47420 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47203 * 300.00107 * 18 16 14 22 22 C 1.46960 * 118.80978 * 55.48071 * 13 12 11 23 23 C 1.46963 * 120.59877 * 0.02562 * 10 8 7 24 24 C 1.39385 * 118.34794 * 359.49549 * 6 4 3 25 25 O 1.35515 * 120.50944 * 180.27370 * 24 6 4 26 26 N 1.31772 * 119.09016 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47561 * 269.98226 * 1 2 3 28 28 H 1.09006 * 109.46738 * 29.98167 * 1 2 3 29 29 H 1.09007 * 109.47159 * 149.97721 * 1 2 3 30 30 H 1.09000 * 109.47324 * 270.26250 * 5 4 3 31 31 H 1.09005 * 109.46746 * 30.25793 * 5 4 3 32 32 H 1.08996 * 109.47128 * 150.25665 * 5 4 3 33 33 H 1.09001 * 109.47403 * 149.71966 * 7 6 4 34 34 H 1.09007 * 109.47129 * 29.72029 * 7 6 4 35 35 H 1.08996 * 109.61476 * 115.50253 * 11 10 8 36 36 H 1.09010 * 109.61052 * 354.99038 * 11 10 8 37 37 H 1.09003 * 109.60871 * 190.82753 * 12 11 10 38 38 H 1.08999 * 109.74926 * 70.40483 * 12 11 10 39 39 H 0.97003 * 120.00012 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.61464 * 64.26783 * 22 13 12 41 41 H 1.09004 * 109.60410 * 184.77119 * 22 13 12 42 42 H 1.08997 * 109.60925 * 244.49552 * 23 10 8 43 43 H 1.09004 * 109.60691 * 4.83230 * 23 10 8 44 44 H 0.96701 * 114.00021 * 89.99397 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1515 0.0000 4 6 3.4721 1.1947 0.0049 5 6 4.1922 2.5185 0.0108 6 6 4.1850 0.0104 -0.0008 7 6 5.6919 0.0162 -0.0008 8 6 6.1943 0.0181 -1.4216 9 8 5.4062 0.0146 -2.3435 10 7 7.5193 0.0237 -1.6678 11 6 8.0236 0.0251 -3.0482 12 6 8.9751 -1.1650 -3.2236 13 7 9.9416 -1.1606 -2.1164 14 6 11.2878 -1.1560 -2.3667 15 1 11.9678 -0.7115 -1.6549 16 6 11.7792 -1.7272 -3.5324 17 7 11.0286 -2.5570 -4.2257 18 14 13.5055 -1.3186 -4.1173 19 1 14.4881 -1.7206 -3.0790 20 1 13.7884 -2.0530 -5.3766 21 1 13.6127 0.1424 -4.3610 22 6 9.4373 -1.1677 -0.7361 23 6 8.4859 0.0274 -0.5607 24 6 3.4753 -1.1892 -0.0008 25 8 4.1299 -2.3758 -0.0007 26 7 2.1477 -1.1515 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 4.3654 2.8425 -1.0155 31 1 3.5841 3.2606 0.5283 32 1 5.1477 2.4100 0.5238 33 1 6.0587 -0.8724 0.5131 34 1 6.0518 0.9076 0.5131 35 1 8.5604 0.9540 -3.2407 36 1 7.1888 -0.0686 -3.7428 37 1 9.5046 -1.0733 -4.1719 38 1 8.4075 -2.0955 -3.2101 39 1 11.3721 -2.9566 -5.0402 40 1 8.8998 -2.0970 -0.5477 41 1 10.2723 -1.0778 -0.0412 42 1 9.0556 0.9565 -0.5757 43 1 7.9560 -0.0615 0.3877 44 1 4.3199 -2.7201 0.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957639674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:20 Heat of formation + Delta-G solvation = 3.418277 kcal Electronic energy + Delta-G solvation = -27499.933965 eV Core-core repulsion = 23646.884740 eV Total energy + Delta-G solvation = -3853.049225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.53913 -39.57141 -37.87514 -36.87778 -35.07514 -33.94106 -32.93254 -31.25627 -31.03916 -29.97804 -29.19949 -27.25988 -26.08651 -23.71610 -23.26637 -22.79957 -21.95271 -20.48202 -18.91342 -18.63544 -18.21357 -17.29579 -16.31774 -16.01312 -15.58160 -15.16859 -15.02122 -14.78658 -14.38999 -14.00280 -13.73498 -13.66373 -13.53823 -13.41710 -13.31256 -13.05987 -12.97889 -12.63767 -12.58962 -12.31840 -12.08267 -11.80097 -11.73121 -11.26700 -10.86094 -10.77568 -10.72646 -10.62259 -10.39301 -10.28255 -10.00092 -9.89824 -9.62523 -9.40573 -9.07668 -8.61738 -8.28088 -6.74898 -5.87512 -3.33524 0.67883 0.86505 2.91671 3.17305 3.28885 3.32887 3.39677 3.40143 3.58567 3.74478 4.14135 4.41350 4.49283 4.62276 4.80583 4.86164 5.03858 5.15409 5.22515 5.29360 5.29682 5.31927 5.39545 5.43564 5.58827 5.67314 5.71119 5.74663 5.79939 5.82052 6.10053 6.20485 6.29805 6.34098 6.46570 6.64952 6.80717 6.83615 7.23177 7.23937 7.52453 7.68955 7.85666 7.95681 8.33252 8.51777 9.08765 9.71613 10.28271 11.19816 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029801 B = 0.002885 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.334647 B = 9704.613881 C = 9933.678085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.338 3.662 3 N -0.526 5.526 4 C 0.203 3.797 5 C -0.110 4.110 6 C -0.187 4.187 7 C -0.089 4.089 8 C 0.515 3.485 9 O -0.549 6.549 10 N -0.595 5.595 11 C 0.088 3.912 12 C 0.159 3.841 13 N -0.591 5.591 14 C -0.260 4.260 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.900 5.900 18 Si 0.905 3.095 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.130 3.870 23 C 0.088 3.912 24 C 0.379 3.621 25 O -0.467 6.467 26 N -0.543 5.543 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.023 0.977 39 H 0.257 0.743 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 7.563 13.293 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 N -0.243 5.243 4 C 0.058 3.942 5 C -0.167 4.167 6 C -0.193 4.193 7 C -0.130 4.130 8 C 0.302 3.698 9 O -0.427 6.427 10 N -0.328 5.328 11 C -0.035 4.035 12 C 0.032 3.968 13 N -0.313 5.313 14 C -0.389 4.389 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.544 5.544 18 Si 0.735 3.265 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.003 3.997 23 C -0.037 4.037 24 C 0.192 3.808 25 O -0.274 6.274 26 N -0.269 5.269 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -15.922 7.450 12.028 21.300 hybrid contribution 2.016 -0.251 0.085 2.033 sum -13.906 7.199 12.113 19.797 Atomic orbital electron populations 1.20569 0.85433 1.04323 1.03812 1.22982 0.97858 0.82224 0.89884 1.68097 1.09207 1.30197 1.16770 1.21429 0.89086 0.95283 0.88399 1.20852 0.99632 0.91922 1.04266 1.20998 0.97286 0.93879 1.07138 1.20464 0.90395 1.05335 0.96793 1.20183 0.82322 0.76965 0.90356 1.90678 1.54970 1.50886 1.46151 1.48043 1.04607 1.71552 1.08591 1.22504 0.98335 1.01411 0.81267 1.21185 0.89273 0.92212 0.94105 1.44000 1.02587 1.85846 0.98908 1.19134 0.82497 1.31598 1.05712 0.91491 1.25102 0.97906 0.96415 1.00054 1.70017 1.37190 1.29392 1.17760 0.86335 0.84106 0.78035 0.78055 1.20816 1.21581 1.20918 1.21350 0.95346 0.93806 0.89198 1.22481 0.91710 1.01494 0.88046 1.19191 0.86613 0.85308 0.89700 1.84827 1.74643 1.34273 1.33641 1.67769 1.09577 1.31834 1.17718 0.89577 0.89449 0.89564 0.89125 0.89700 0.89960 0.87653 0.87579 0.92139 0.90228 0.88283 0.95842 0.93338 0.95835 0.91451 0.91411 0.91074 0.73700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.32 36.01 0.37 -0.35 16 2 C 0.34 4.42 7.64 -157.22 -1.20 3.22 16 3 N -0.53 -7.06 10.27 -7.05 -0.07 -7.14 16 4 C 0.20 2.61 6.82 -82.31 -0.56 2.05 16 5 C -0.11 -1.05 9.84 36.00 0.35 -0.70 16 6 C -0.19 -2.51 4.42 -104.20 -0.46 -2.97 16 7 C -0.09 -1.07 3.64 -29.04 -0.11 -1.17 16 8 C 0.51 8.73 7.69 -10.98 -0.08 8.64 16 9 O -0.55 -11.54 15.44 5.56 0.09 -11.45 16 10 N -0.60 -10.37 2.95 -172.24 -0.51 -10.88 16 11 C 0.09 1.76 6.59 -3.60 -0.02 1.74 16 12 C 0.16 3.76 5.51 -3.59 -0.02 3.74 16 13 N -0.59 -14.09 2.96 -171.80 -0.51 -14.60 16 14 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 15 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 16 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 17 N -0.90 -25.62 11.20 55.49 0.62 -25.00 16 18 Si 0.91 21.01 29.59 -169.99 -5.03 15.98 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.13 2.46 6.70 -3.40 -0.02 2.43 16 23 C 0.09 1.30 6.52 -3.39 -0.02 1.28 16 24 C 0.38 5.43 7.81 -16.70 -0.13 5.30 16 25 O -0.47 -6.07 12.75 -18.24 -0.23 -6.30 16 26 N -0.54 -7.90 10.36 -10.78 -0.11 -8.01 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.62 6.07 -51.93 -0.32 0.31 16 33 H 0.11 1.08 7.21 -51.93 -0.37 0.71 16 34 H 0.11 0.95 5.84 -51.92 -0.30 0.64 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.64 6.99 -51.92 -0.36 1.28 16 37 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.77 5.91 -51.93 -0.31 0.47 16 44 H 0.40 2.77 9.06 45.56 0.41 3.18 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -35.74 359.30 -7.80 -43.54 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.33 Total: 2.13 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: -2.14 Total: 16.32 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.58 Total: -65.63 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.15 Total: -17.75 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.74 -7.80 -43.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957639674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds