Wall clock time and date at job start Tue Mar 31 2020 12:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31781 * 119.09286 * 2 1 4 4 C 1.32498 * 120.96096 * 179.75276 * 3 2 1 5 5 C 1.50698 * 120.41488 * 180.26093 * 4 3 2 6 6 C 1.38234 * 119.17598 * 0.51785 * 4 3 2 7 7 C 1.50693 * 120.82586 * 179.76865 * 6 4 3 8 8 C 1.50703 * 109.47115 * 269.72152 * 7 6 4 9 9 O 1.21279 * 120.00143 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99763 * 179.97438 * 8 7 6 11 11 C 1.46965 * 120.59323 * 179.97438 * 10 8 7 12 12 C 1.53374 * 108.63702 * 235.25034 * 11 10 8 13 13 N 1.46968 * 108.63080 * 310.57409 * 12 11 10 14 14 C 1.36934 * 120.58904 * 235.19759 * 13 12 11 15 15 H 1.08009 * 119.99376 * 151.84519 * 14 13 12 16 16 C 1.38804 * 120.00824 * 331.57781 * 14 13 12 17 17 N 1.31627 * 119.99593 * 342.82852 * 16 14 13 18 18 Si 1.86794 * 120.00637 * 162.82757 * 16 14 13 19 19 H 1.48504 * 109.47167 * 59.99793 * 18 16 14 20 20 H 1.48497 * 109.47420 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47203 * 300.00107 * 18 16 14 22 22 C 1.46960 * 118.80978 * 55.48071 * 13 12 11 23 23 C 1.46963 * 120.59877 * 0.02562 * 10 8 7 24 24 C 1.39385 * 118.34794 * 359.49549 * 6 4 3 25 25 O 1.35515 * 120.50944 * 180.27370 * 24 6 4 26 26 N 1.31772 * 119.09016 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47561 * 269.98226 * 1 2 3 28 28 H 1.09006 * 109.46738 * 29.98167 * 1 2 3 29 29 H 1.09007 * 109.47159 * 149.97721 * 1 2 3 30 30 H 1.09000 * 109.47324 * 270.26250 * 5 4 3 31 31 H 1.09005 * 109.46746 * 30.25793 * 5 4 3 32 32 H 1.08996 * 109.47128 * 150.25665 * 5 4 3 33 33 H 1.09001 * 109.47403 * 149.71966 * 7 6 4 34 34 H 1.09007 * 109.47129 * 29.72029 * 7 6 4 35 35 H 1.08996 * 109.61476 * 115.50253 * 11 10 8 36 36 H 1.09010 * 109.61052 * 354.99038 * 11 10 8 37 37 H 1.09003 * 109.60871 * 190.82753 * 12 11 10 38 38 H 1.08999 * 109.74926 * 70.40483 * 12 11 10 39 39 H 0.97003 * 120.00012 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.61464 * 64.26783 * 22 13 12 41 41 H 1.09004 * 109.60410 * 184.77119 * 22 13 12 42 42 H 1.08997 * 109.60925 * 244.49552 * 23 10 8 43 43 H 1.09004 * 109.60691 * 4.83230 * 23 10 8 44 44 H 0.96701 * 114.00021 * 89.99397 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1515 0.0000 4 6 3.4721 1.1947 0.0049 5 6 4.1922 2.5185 0.0108 6 6 4.1850 0.0104 -0.0008 7 6 5.6919 0.0162 -0.0008 8 6 6.1943 0.0181 -1.4216 9 8 5.4062 0.0146 -2.3435 10 7 7.5193 0.0237 -1.6678 11 6 8.0236 0.0251 -3.0482 12 6 8.9751 -1.1650 -3.2236 13 7 9.9416 -1.1606 -2.1164 14 6 11.2878 -1.1560 -2.3667 15 1 11.9678 -0.7115 -1.6549 16 6 11.7792 -1.7272 -3.5324 17 7 11.0286 -2.5570 -4.2257 18 14 13.5055 -1.3186 -4.1173 19 1 14.4881 -1.7206 -3.0790 20 1 13.7884 -2.0530 -5.3766 21 1 13.6127 0.1424 -4.3610 22 6 9.4373 -1.1677 -0.7361 23 6 8.4859 0.0274 -0.5607 24 6 3.4753 -1.1892 -0.0008 25 8 4.1299 -2.3758 -0.0007 26 7 2.1477 -1.1515 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 4.3654 2.8425 -1.0155 31 1 3.5841 3.2606 0.5283 32 1 5.1477 2.4100 0.5238 33 1 6.0587 -0.8724 0.5131 34 1 6.0518 0.9076 0.5131 35 1 8.5604 0.9540 -3.2407 36 1 7.1888 -0.0686 -3.7428 37 1 9.5046 -1.0733 -4.1719 38 1 8.4075 -2.0955 -3.2101 39 1 11.3721 -2.9566 -5.0402 40 1 8.8998 -2.0970 -0.5477 41 1 10.2723 -1.0778 -0.0412 42 1 9.0556 0.9565 -0.5757 43 1 7.9560 -0.0615 0.3877 44 1 4.3199 -2.7201 0.8827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957639674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:18 Heat of formation + Delta-G solvation = -24.704995 kcal Electronic energy + Delta-G solvation = -27501.153481 eV Core-core repulsion = 23646.884740 eV Total energy + Delta-G solvation = -3854.268742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.49843 -40.93391 -38.83616 -38.45238 -36.02921 -35.64123 -33.92312 -33.06706 -32.33626 -31.17201 -30.00755 -28.79886 -27.28448 -25.39766 -24.48740 -24.07423 -23.00360 -22.00709 -20.11789 -19.86179 -19.16558 -18.78805 -17.87290 -17.19415 -16.85222 -16.65697 -16.36854 -15.97406 -15.50819 -15.45652 -15.16359 -15.00099 -14.99307 -14.60498 -14.33664 -14.16302 -14.11772 -13.62832 -13.38830 -13.34761 -13.15036 -13.08140 -12.98624 -12.64572 -12.61416 -12.47867 -12.30431 -12.01136 -11.88024 -11.68637 -11.66173 -11.34927 -10.95743 -10.59768 -10.38309 -10.09924 -9.81310 -8.65736 -7.88113 -5.37144 -0.27805 -0.08189 1.48418 1.51168 1.57633 1.63319 2.04100 2.30446 2.50601 2.56184 2.91866 3.26768 3.26974 3.52249 3.60586 3.69505 3.74058 4.04341 4.22477 4.26525 4.29468 4.41189 4.42478 4.52614 4.57406 4.66077 4.67074 4.69514 4.72660 4.81310 4.85484 4.91393 4.94775 5.07553 5.12851 5.27678 5.40964 5.45780 5.61360 5.68023 5.88154 6.35487 6.49250 6.53429 7.01117 7.09308 7.19220 7.79979 8.33080 9.16966 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029801 B = 0.002885 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.334647 B = 9704.613881 C = 9933.678085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.326 3.674 3 N -0.539 5.539 4 C 0.195 3.805 5 C -0.108 4.108 6 C -0.201 4.201 7 C -0.078 4.078 8 C 0.512 3.488 9 O -0.595 6.595 10 N -0.599 5.599 11 C 0.104 3.896 12 C 0.171 3.829 13 N -0.609 5.609 14 C -0.261 4.261 15 H 0.079 0.921 16 C -0.054 4.054 17 N -0.939 5.939 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.301 1.301 21 H -0.276 1.276 22 C 0.122 3.878 23 C 0.096 3.904 24 C 0.365 3.635 25 O -0.483 6.483 26 N -0.569 5.569 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.066 0.934 38 H -0.013 1.013 39 H 0.249 0.751 40 H 0.015 0.985 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 9.456 16.139 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.059 3.941 3 N -0.257 5.257 4 C 0.050 3.950 5 C -0.165 4.165 6 C -0.207 4.207 7 C -0.118 4.118 8 C 0.302 3.698 9 O -0.477 6.477 10 N -0.331 5.331 11 C -0.021 4.021 12 C 0.044 3.956 13 N -0.332 5.332 14 C -0.391 4.391 15 H 0.097 0.903 16 C -0.249 4.249 17 N -0.585 5.585 18 Si 0.797 3.203 19 H -0.198 1.198 20 H -0.227 1.227 21 H -0.202 1.202 22 C -0.003 4.003 23 C -0.027 4.027 24 C 0.179 3.821 25 O -0.294 6.294 26 N -0.295 5.295 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.005 0.995 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.143 0.857 44 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -15.752 9.355 14.957 23.651 hybrid contribution 1.897 -0.889 -0.747 2.224 sum -13.855 8.466 14.210 21.577 Atomic orbital electron populations 1.20706 0.82941 1.04873 1.05344 1.23762 0.99511 0.81949 0.88884 1.68206 1.09730 1.30257 1.17488 1.22023 0.89208 0.96530 0.87230 1.20965 1.00830 0.90569 1.04119 1.21128 0.97985 0.93672 1.07901 1.20518 0.89498 1.08425 0.93348 1.21051 0.81418 0.75218 0.92095 1.90665 1.56034 1.52720 1.48244 1.48116 1.05563 1.71598 1.07850 1.22038 0.96940 0.99682 0.83411 1.20832 0.89300 0.92176 0.93257 1.44264 1.02051 1.86030 1.00893 1.19558 0.83779 1.30165 1.05564 0.90346 1.25887 1.01519 0.96804 1.00673 1.70192 1.39002 1.31228 1.18104 0.85312 0.80114 0.77740 0.77094 1.19765 1.22728 1.20190 1.21615 0.96760 0.95374 0.86594 1.22560 0.90981 0.99900 0.89227 1.19505 0.86944 0.85994 0.89698 1.84772 1.74534 1.34190 1.35909 1.67829 1.10038 1.32648 1.18991 0.87414 0.88483 0.89330 0.90124 0.88216 0.87345 0.85275 0.83422 0.91331 0.91559 0.91549 0.99538 0.94176 0.96670 0.89864 0.90027 0.85728 0.71077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.32 71.24 0.74 -0.57 16 2 C 0.33 8.23 7.64 138.76 1.06 9.29 16 3 N -0.54 -13.76 10.27 -176.21 -1.81 -15.57 16 4 C 0.19 4.62 6.82 42.46 0.29 4.91 16 5 C -0.11 -1.74 9.84 71.24 0.70 -1.04 16 6 C -0.20 -4.95 4.42 -19.59 -0.09 -5.04 16 7 C -0.08 -1.57 3.64 29.10 0.11 -1.46 16 8 C 0.51 16.32 7.69 87.66 0.67 17.00 16 9 O -0.60 -24.91 15.44 -3.02 -0.05 -24.96 16 10 N -0.60 -19.64 2.95 -817.24 -2.41 -22.05 16 11 C 0.10 4.18 6.59 86.42 0.57 4.75 16 12 C 0.17 8.40 5.51 86.42 0.48 8.88 16 13 N -0.61 -28.90 2.96 -697.44 -2.06 -30.96 16 14 C -0.26 -13.50 9.57 84.03 0.80 -12.69 16 15 H 0.08 3.81 7.89 -2.91 -0.02 3.79 16 16 C -0.05 -2.91 4.91 84.86 0.42 -2.50 16 17 N -0.94 -55.45 11.20 21.65 0.24 -55.21 16 18 Si 0.97 43.54 29.59 68.60 2.03 45.57 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 C 0.12 4.33 6.70 86.55 0.58 4.91 16 23 C 0.10 2.48 6.52 86.55 0.56 3.04 16 24 C 0.37 10.09 7.81 84.82 0.66 10.75 16 25 O -0.48 -12.08 12.75 -88.17 -1.12 -13.20 16 26 N -0.57 -16.23 10.36 -300.70 -3.12 -19.34 16 27 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.11 1.12 6.07 -2.39 -0.01 1.10 16 33 H 0.13 2.04 7.21 -2.39 -0.02 2.02 16 34 H 0.15 1.73 5.84 -2.38 -0.01 1.72 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 2.83 6.99 -2.38 -0.02 2.81 16 37 H 0.07 3.67 6.00 -2.39 -0.01 3.66 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.12 1.92 5.91 -2.39 -0.01 1.90 16 44 H 0.43 5.20 9.06 -74.06 -0.67 4.53 16 Total: -1.00 -81.67 359.30 -0.37 -82.04 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.37 Total: 13.46 kcal Atomic # 6 Polarization: 32.67 SS G_CDS: 7.55 Total: 40.23 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -9.16 Total: -143.13 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.17 Total: -38.16 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -81.67 -0.37 -82.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957639674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.334 kcal (2) G-P(sol) polarization free energy of solvation -81.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds