Wall clock time and date at job start Tue Mar 31 2020 12:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47148 * 269.99518 * 3 2 1 5 5 H 1.48498 * 109.47599 * 30.00028 * 3 2 1 6 6 H 1.48502 * 109.47141 * 150.00086 * 3 2 1 7 7 C 1.38812 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99650 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64738 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.26931 * 178.96175 * 10 9 7 12 12 C 1.55155 * 102.94242 * 337.80281 * 11 10 9 13 13 H 1.09006 * 111.00515 * 277.39042 * 12 11 10 14 14 C 1.52998 * 111.00564 * 153.57852 * 12 11 10 15 15 H 1.09002 * 109.49771 * 299.94147 * 14 12 11 16 16 C 1.53040 * 109.50136 * 179.83903 * 14 12 11 17 17 C 1.53031 * 109.54024 * 178.68205 * 16 14 12 18 18 C 1.52768 * 109.38159 * 61.24076 * 17 16 14 19 19 N 1.46927 * 109.00824 * 305.58725 * 18 17 16 20 20 C 1.34777 * 120.62790 * 233.58616 * 19 18 17 21 21 O 1.21500 * 119.99679 * 173.32682 * 20 19 18 22 22 C 1.48281 * 120.00199 * 353.60064 * 20 19 18 23 23 C 1.47486 * 128.71133 * 173.09718 * 22 20 19 24 24 N 1.30647 * 102.71478 * 179.85636 * 23 22 20 25 25 O 1.20832 * 109.61844 * 0.42560 * 24 23 22 26 26 N 1.20905 * 115.91235 * 359.69342 * 25 24 23 27 27 C 1.46920 * 118.73704 * 53.30900 * 19 18 17 28 28 C 1.47421 * 125.64694 * 179.97438 * 9 7 2 29 29 H 0.97004 * 120.00062 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.88695 * 59.54177 * 10 9 7 31 31 H 1.09003 * 109.88213 * 298.37580 * 10 9 7 32 32 H 1.09000 * 110.71761 * 219.43985 * 11 10 9 33 33 H 1.08996 * 110.87546 * 96.24180 * 11 10 9 34 34 H 1.09008 * 109.45657 * 298.70559 * 16 14 12 35 35 H 1.09000 * 109.45808 * 58.67468 * 16 14 12 36 36 H 1.09004 * 109.49926 * 181.31276 * 17 16 14 37 37 H 1.08996 * 109.50367 * 301.41705 * 17 16 14 38 38 H 1.09005 * 109.50930 * 185.70543 * 18 17 16 39 39 H 1.08997 * 109.43047 * 65.42374 * 18 17 16 40 40 H 1.08005 * 128.64300 * 359.97438 * 23 22 20 41 41 H 1.08999 * 109.58797 * 66.43444 * 27 19 18 42 42 H 1.09004 * 109.58695 * 186.85489 * 27 19 18 43 43 H 1.09004 * 110.36843 * 85.26902 * 28 9 7 44 44 H 1.08997 * 110.37020 * 322.94904 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0262 12 6 0.8519 -4.6561 -0.6109 13 1 0.8566 -4.5970 -1.6993 14 6 1.0370 -6.1008 -0.1424 15 1 1.0990 -6.1254 0.9455 16 6 2.3248 -6.6710 -0.7412 17 6 2.5279 -8.1050 -0.2470 18 6 1.3560 -8.9705 -0.7067 19 7 0.1002 -8.3508 -0.2621 20 6 -0.7987 -9.0568 0.4521 21 8 -1.7750 -8.5029 0.9172 22 6 -0.5930 -10.5082 0.6754 23 6 -1.3662 -11.4286 1.5300 24 7 -0.7569 -12.5699 1.3483 25 8 0.1689 -12.4188 0.5866 26 7 0.3287 -11.2969 0.1653 27 6 -0.1543 -6.9452 -0.6057 28 6 1.9335 -3.7311 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5576 -2.0522 -0.8830 31 1 -0.5543 -2.0845 0.9024 32 1 -1.2985 -4.2515 -0.6762 33 1 -0.6333 -4.4205 0.9799 34 1 2.2517 -6.6686 -1.8288 35 1 3.1714 -6.0576 -0.4328 36 1 3.4572 -8.5024 -0.6553 37 1 2.5763 -8.1113 0.8419 38 1 1.4461 -9.9660 -0.2721 39 1 1.3630 -9.0424 -1.7943 40 1 -2.2239 -11.2131 2.1501 41 1 -0.2730 -6.8485 -1.6849 42 1 -1.0604 -6.6047 -0.1045 43 1 2.1667 -4.0420 1.0189 44 1 2.8329 -3.7405 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961261904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:03 Heat of formation + Delta-G solvation = 114.143038 kcal Electronic energy + Delta-G solvation = -27262.927200 eV Core-core repulsion = 23414.679361 eV Total energy + Delta-G solvation = -3848.247839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.33137 -40.58537 -38.45238 -36.85234 -35.28889 -34.92679 -33.58347 -32.45078 -31.18366 -28.95802 -27.80130 -26.56735 -25.41771 -24.49773 -23.99643 -22.93200 -21.41586 -19.94521 -19.85907 -19.56342 -19.44605 -18.50544 -17.68520 -16.78787 -16.38669 -15.76302 -15.27052 -14.97135 -14.63351 -14.56377 -14.20247 -13.91038 -13.69415 -13.32123 -13.29695 -13.11036 -12.56902 -12.33186 -12.16056 -11.86628 -11.80250 -11.73343 -11.26606 -11.20509 -11.07411 -10.90286 -10.86560 -10.80350 -10.66739 -10.54215 -10.09525 -10.00829 -9.79989 -9.68483 -9.59574 -8.92780 -8.57115 -6.79248 -5.68241 -3.01540 0.31647 0.91811 2.18419 2.56193 2.98855 3.06377 3.41066 3.45781 3.46550 3.48078 4.12545 4.34706 4.51030 4.61074 4.75787 4.77325 4.88422 4.93285 5.09735 5.29547 5.38734 5.48795 5.51883 5.57821 5.63904 5.67992 5.69603 5.89419 5.93366 5.96799 6.00692 6.17942 6.23778 6.34708 6.44274 6.58917 6.60516 6.75924 6.91944 6.99535 7.56342 7.59669 7.68580 7.86610 7.99649 8.29852 9.25488 9.86156 10.52782 11.43424 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034367 B = 0.002539 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.532920 B =11023.217519 C =11579.781002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.178 3.822 11 C -0.141 4.141 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.087 3.913 19 N -0.589 5.589 20 C 0.600 3.400 21 O -0.512 6.512 22 C -0.032 4.032 23 C 0.037 3.963 24 N -0.352 5.352 25 O 0.335 5.665 26 N -0.320 5.320 27 C 0.117 3.883 28 C 0.145 3.855 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.228 0.772 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.016 0.984 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -24.452 -0.858 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.179 4.179 12 C -0.115 4.115 13 H 0.093 0.907 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.155 4.155 17 C -0.172 4.172 18 C -0.036 4.036 19 N -0.321 5.321 20 C 0.383 3.617 21 O -0.386 6.386 22 C -0.197 4.197 23 C -0.149 4.149 24 N -0.075 5.075 25 O 0.111 5.889 26 N -0.044 5.044 27 C -0.004 4.004 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.244 0.756 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.034 0.966 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.704 -24.775 -0.948 24.803 hybrid contribution -0.109 1.616 0.266 1.642 sum 0.595 -23.158 -0.681 23.176 Atomic orbital electron populations 1.69978 1.04864 1.24944 1.57181 1.24807 0.95720 0.97652 1.02411 0.86128 0.78569 0.83593 0.77530 1.21644 1.21697 1.20743 1.19053 0.90389 0.82505 1.43616 0.90545 1.44492 1.01797 0.99917 1.87120 1.21123 0.84265 0.88406 1.00900 1.22942 0.95990 0.99484 0.99532 1.22319 0.97742 0.91477 0.99970 0.90652 1.21480 0.93668 0.94540 1.00954 0.90626 1.21626 0.98268 0.94928 1.00652 1.21851 0.97486 0.96136 1.01678 1.22288 0.82590 0.98107 1.00613 1.48009 1.18777 1.12978 1.52348 1.16593 0.83599 0.82108 0.79356 1.90864 1.29630 1.68936 1.49142 1.26336 0.94774 0.98565 1.00028 1.27763 1.02081 0.85279 0.99741 1.75083 1.00400 1.23766 1.08231 1.85100 1.37058 1.24504 1.42201 1.75336 1.19445 0.92527 1.17061 1.21929 1.00271 0.77386 1.00818 1.21511 0.94107 0.85989 0.96507 0.93806 0.93721 0.94145 0.92337 0.92489 0.91593 0.90773 0.90346 0.91602 0.87530 0.90716 0.75559 0.90683 0.88155 0.96636 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -15.59 3.39 -170.08 -0.58 -16.17 16 10 C 0.18 4.36 5.37 -3.07 -0.02 4.34 16 11 C -0.14 -2.60 5.40 -24.90 -0.13 -2.74 16 12 C -0.10 -1.55 2.56 -88.48 -0.23 -1.78 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.09 -1.11 1.86 -90.50 -0.17 -1.28 16 15 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 16 C -0.12 -1.25 5.05 -26.69 -0.13 -1.39 16 17 C -0.13 -1.18 6.06 -26.83 -0.16 -1.34 16 18 C 0.09 0.77 6.15 -3.93 -0.02 0.74 16 19 N -0.59 -6.50 2.98 -173.98 -0.52 -7.02 16 20 C 0.60 7.13 7.71 -12.13 -0.09 7.03 16 21 O -0.51 -7.49 16.47 5.37 0.09 -7.40 16 22 C -0.03 -0.31 7.19 -80.07 -0.58 -0.88 16 23 C 0.04 0.28 12.63 -14.29 -0.18 0.10 16 24 N -0.35 -2.92 12.22 30.71 0.38 -2.54 16 25 O 0.33 2.76 11.65 27.27 0.32 3.07 16 26 N -0.32 -2.81 9.02 33.49 0.30 -2.51 16 27 C 0.12 1.40 5.40 -3.71 -0.02 1.38 16 28 C 0.15 2.92 5.95 -2.54 -0.02 2.91 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 31 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 34 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 0.84 7.46 -51.93 -0.39 0.46 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.91 4.25 -52.80 -0.22 0.69 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.23 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.37 6.37 -51.93 -0.33 1.04 16 43 H 0.02 0.32 7.98 -51.93 -0.41 -0.09 16 44 H 0.04 0.70 8.06 -51.93 -0.42 0.29 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -31.96 350.33 -7.50 -39.46 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.31 Total: -2.73 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.00 Total: 0.19 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.15 Total: -55.11 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.41 Total: -4.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.96 -7.50 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.601 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds