Wall clock time and date at job start Tue Mar 31 2020 12:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47148 * 269.99518 * 3 2 1 5 5 H 1.48498 * 109.47599 * 30.00028 * 3 2 1 6 6 H 1.48502 * 109.47141 * 150.00086 * 3 2 1 7 7 C 1.38812 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99650 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64738 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.26931 * 178.96175 * 10 9 7 12 12 C 1.55155 * 102.94242 * 337.80281 * 11 10 9 13 13 H 1.09006 * 111.00515 * 277.39042 * 12 11 10 14 14 C 1.52998 * 111.00564 * 153.57852 * 12 11 10 15 15 H 1.09002 * 109.49771 * 299.94147 * 14 12 11 16 16 C 1.53040 * 109.50136 * 179.83903 * 14 12 11 17 17 C 1.53031 * 109.54024 * 178.68205 * 16 14 12 18 18 C 1.52768 * 109.38159 * 61.24076 * 17 16 14 19 19 N 1.46927 * 109.00824 * 305.58725 * 18 17 16 20 20 C 1.34777 * 120.62790 * 233.58616 * 19 18 17 21 21 O 1.21500 * 119.99679 * 173.32682 * 20 19 18 22 22 C 1.48281 * 120.00199 * 353.60064 * 20 19 18 23 23 C 1.47486 * 128.71133 * 173.09718 * 22 20 19 24 24 N 1.30647 * 102.71478 * 179.85636 * 23 22 20 25 25 O 1.20832 * 109.61844 * 0.42560 * 24 23 22 26 26 N 1.20905 * 115.91235 * 359.69342 * 25 24 23 27 27 C 1.46920 * 118.73704 * 53.30900 * 19 18 17 28 28 C 1.47421 * 125.64694 * 179.97438 * 9 7 2 29 29 H 0.97004 * 120.00062 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.88695 * 59.54177 * 10 9 7 31 31 H 1.09003 * 109.88213 * 298.37580 * 10 9 7 32 32 H 1.09000 * 110.71761 * 219.43985 * 11 10 9 33 33 H 1.08996 * 110.87546 * 96.24180 * 11 10 9 34 34 H 1.09008 * 109.45657 * 298.70559 * 16 14 12 35 35 H 1.09000 * 109.45808 * 58.67468 * 16 14 12 36 36 H 1.09004 * 109.49926 * 181.31276 * 17 16 14 37 37 H 1.08996 * 109.50367 * 301.41705 * 17 16 14 38 38 H 1.09005 * 109.50930 * 185.70543 * 18 17 16 39 39 H 1.08997 * 109.43047 * 65.42374 * 18 17 16 40 40 H 1.08005 * 128.64300 * 359.97438 * 23 22 20 41 41 H 1.08999 * 109.58797 * 66.43444 * 27 19 18 42 42 H 1.09004 * 109.58695 * 186.85489 * 27 19 18 43 43 H 1.09004 * 110.36843 * 85.26902 * 28 9 7 44 44 H 1.08997 * 110.37020 * 322.94904 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0262 12 6 0.8519 -4.6561 -0.6109 13 1 0.8566 -4.5970 -1.6993 14 6 1.0370 -6.1008 -0.1424 15 1 1.0990 -6.1254 0.9455 16 6 2.3248 -6.6710 -0.7412 17 6 2.5279 -8.1050 -0.2470 18 6 1.3560 -8.9705 -0.7067 19 7 0.1002 -8.3508 -0.2621 20 6 -0.7987 -9.0568 0.4521 21 8 -1.7750 -8.5029 0.9172 22 6 -0.5930 -10.5082 0.6754 23 6 -1.3662 -11.4286 1.5300 24 7 -0.7569 -12.5699 1.3483 25 8 0.1689 -12.4188 0.5866 26 7 0.3287 -11.2969 0.1653 27 6 -0.1543 -6.9452 -0.6057 28 6 1.9335 -3.7311 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5576 -2.0522 -0.8830 31 1 -0.5543 -2.0845 0.9024 32 1 -1.2985 -4.2515 -0.6762 33 1 -0.6333 -4.4205 0.9799 34 1 2.2517 -6.6686 -1.8288 35 1 3.1714 -6.0576 -0.4328 36 1 3.4572 -8.5024 -0.6553 37 1 2.5763 -8.1113 0.8419 38 1 1.4461 -9.9660 -0.2721 39 1 1.3630 -9.0424 -1.7943 40 1 -2.2239 -11.2131 2.1501 41 1 -0.2730 -6.8485 -1.6849 42 1 -1.0604 -6.6047 -0.1045 43 1 2.1667 -4.0420 1.0189 44 1 2.8329 -3.7405 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961261904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:02 Heat of formation + Delta-G solvation = 94.764672 kcal Electronic energy + Delta-G solvation = -27263.767509 eV Core-core repulsion = 23414.679361 eV Total energy + Delta-G solvation = -3849.088148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.99009 -41.50908 -39.74007 -38.14323 -36.07797 -35.61059 -35.01465 -33.66742 -32.59876 -30.68876 -29.15278 -27.60983 -26.65469 -25.81187 -24.82677 -24.00468 -22.47772 -21.66053 -20.99574 -20.69462 -20.11831 -19.19139 -18.86237 -18.45639 -17.30524 -16.95367 -16.61228 -16.11367 -15.89078 -15.62883 -15.55257 -15.23348 -14.71325 -14.35857 -14.18704 -14.00022 -13.86063 -13.78688 -13.62425 -13.44409 -12.99467 -12.78791 -12.72757 -12.47658 -12.32517 -12.13212 -12.00087 -11.94809 -11.84881 -11.74640 -11.72491 -11.62633 -11.39149 -11.19978 -11.01045 -10.70672 -9.83202 -8.88949 -7.84616 -5.20272 -0.41170 0.29907 1.37022 1.44898 1.47259 1.55853 1.71539 2.26843 2.44153 2.49745 2.79103 3.33272 3.37755 3.59110 3.67953 3.70276 3.82994 3.90678 4.03365 4.18200 4.22231 4.34291 4.41386 4.42976 4.52843 4.61711 4.70630 4.74584 4.84507 4.87702 4.92552 4.94245 5.06664 5.12112 5.14950 5.32834 5.35680 5.42710 5.45837 5.54688 5.68557 5.78479 6.06360 6.20704 6.68791 7.10718 7.34159 7.79221 8.44126 9.26001 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034367 B = 0.002539 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.532920 B =11023.217519 C =11579.781002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.185 3.815 11 C -0.127 4.127 12 C -0.075 4.075 13 H 0.083 0.917 14 C -0.075 4.075 15 H 0.062 0.938 16 C -0.115 4.115 17 C -0.126 4.126 18 C 0.086 3.914 19 N -0.588 5.588 20 C 0.598 3.402 21 O -0.547 6.547 22 C -0.048 4.048 23 C 0.049 3.951 24 N -0.358 5.358 25 O 0.342 5.658 26 N -0.315 5.315 27 C 0.120 3.880 28 C 0.141 3.859 29 H 0.246 0.754 30 H 0.010 0.990 31 H -0.002 1.002 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.252 0.748 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.017 0.983 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 -26.645 -1.550 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.357 5.357 10 C 0.060 3.940 11 C -0.165 4.165 12 C -0.095 4.095 13 H 0.101 0.899 14 C -0.094 4.094 15 H 0.080 0.920 16 C -0.152 4.152 17 C -0.164 4.164 18 C -0.036 4.036 19 N -0.320 5.320 20 C 0.383 3.617 21 O -0.424 6.424 22 C -0.212 4.212 23 C -0.136 4.136 24 N -0.082 5.082 25 O 0.117 5.883 26 N -0.036 5.036 27 C -0.001 4.001 28 C 0.016 3.984 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.017 0.983 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.268 0.732 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.035 0.965 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.155 -27.003 -1.658 27.139 hybrid contribution -0.511 2.247 0.504 2.359 sum 1.644 -24.755 -1.154 24.837 Atomic orbital electron populations 1.70216 1.06400 1.25188 1.58503 1.25700 0.96634 1.01193 1.02814 0.85058 0.77609 0.79002 0.77553 1.21087 1.22250 1.19281 1.19489 0.91036 0.83816 1.42679 0.89872 1.44845 1.02497 1.01398 1.86936 1.20881 0.83876 0.92025 0.97258 1.22781 0.98015 0.95070 1.00640 1.22176 0.94529 0.92842 0.99982 0.89909 1.21312 0.95597 0.92340 1.00201 0.91953 1.21607 0.96403 0.95910 1.01304 1.21816 0.98547 0.94821 1.01263 1.22456 0.81405 0.98111 1.01606 1.48074 1.19429 1.12516 1.51953 1.16808 0.83156 0.82909 0.78786 1.90845 1.31026 1.69882 1.50599 1.26070 0.95958 0.97723 1.01425 1.28171 1.02071 0.84402 0.98969 1.75112 1.00611 1.23960 1.08536 1.85100 1.37028 1.24134 1.42041 1.75303 1.19056 0.92588 1.16653 1.21781 0.98891 0.77996 1.01456 1.21706 0.95449 0.84270 0.96983 0.94507 0.97155 0.98335 0.90283 0.92074 0.90317 0.91364 0.87891 0.92410 0.87026 0.89091 0.73214 0.89133 0.89926 0.96545 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 10.31 21.65 0.22 -58.78 16 2 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 3 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.24 -13.76 10.28 84.03 0.86 -12.90 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 9 N -0.63 -33.02 3.39 -692.02 -2.35 -35.37 16 10 C 0.18 9.42 5.37 86.73 0.47 9.89 16 11 C -0.13 -4.68 5.40 31.78 0.17 -4.51 16 12 C -0.08 -2.37 2.56 -9.41 -0.02 -2.40 16 13 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 14 C -0.07 -1.78 1.86 -10.72 -0.02 -1.80 16 15 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 16 C -0.11 -2.12 5.05 30.62 0.15 -1.97 16 17 C -0.13 -1.83 6.06 30.53 0.19 -1.65 16 18 C 0.09 1.26 6.15 86.22 0.53 1.79 16 19 N -0.59 -11.81 2.98 -822.64 -2.45 -14.26 16 20 C 0.60 13.42 7.71 86.92 0.67 14.09 16 21 O -0.55 -15.72 16.47 -3.72 -0.06 -15.78 16 22 C -0.05 -0.82 7.19 44.29 0.32 -0.51 16 23 C 0.05 0.66 12.63 87.31 1.10 1.76 16 24 N -0.36 -5.19 12.22 -61.45 -0.75 -5.95 16 25 O 0.34 4.90 11.65 140.86 1.64 6.54 16 26 N -0.31 -4.82 9.02 -52.08 -0.47 -5.29 16 27 C 0.12 2.67 5.40 86.36 0.47 3.13 16 28 C 0.14 5.60 5.95 86.85 0.52 6.12 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.01 0.58 7.38 -2.39 -0.02 0.56 16 31 H 0.00 -0.09 7.51 -2.39 -0.02 -0.11 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.20 8.04 -2.39 -0.02 2.19 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 1.37 7.46 -2.39 -0.02 1.36 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 1.58 4.25 -4.00 -0.02 1.56 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.25 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 2.17 6.37 -2.38 -0.02 2.16 16 43 H 0.02 0.67 7.98 -2.38 -0.02 0.65 16 44 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 Total: -1.00 -71.64 350.33 4.68 -66.96 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.01 Total: 6.01 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.87 Total: 7.40 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -5.80 Total: -119.64 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 1.58 Total: -9.24 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -71.64 4.68 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.724 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds