Wall clock time and date at job start Tue Mar 31 2020 12:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00606 * 2 1 4 4 H 1.48491 * 109.47364 * 270.00799 * 3 2 1 5 5 H 1.48507 * 109.46461 * 30.00818 * 3 2 1 6 6 H 1.48496 * 109.47248 * 149.99911 * 3 2 1 7 7 C 1.38819 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99537 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64923 * 0.04766 * 9 7 2 11 11 C 1.55122 * 104.94077 * 203.96830 * 10 9 7 12 12 C 1.55157 * 101.48580 * 323.21873 * 11 10 9 13 13 H 1.09002 * 110.72335 * 276.83209 * 12 11 10 14 14 C 1.53003 * 110.71870 * 153.73690 * 12 11 10 15 15 H 1.09001 * 109.50000 * 302.43881 * 14 12 11 16 16 C 1.53043 * 109.49782 * 62.51057 * 14 12 11 17 17 C 1.53038 * 109.53521 * 181.34944 * 16 14 12 18 18 C 1.53193 * 109.31386 * 298.62962 * 17 16 14 19 19 N 1.46925 * 108.77292 * 54.63905 * 18 17 16 20 20 C 1.34774 * 120.63148 * 126.41366 * 19 18 17 21 21 O 1.21502 * 120.00159 * 174.88928 * 20 19 18 22 22 C 1.48280 * 120.00070 * 354.89643 * 20 19 18 23 23 C 1.47487 * 128.71080 * 185.87729 * 22 20 19 24 24 N 1.30648 * 102.71288 * 179.97438 * 23 22 20 25 25 O 1.20834 * 109.62017 * 0.02562 * 24 23 22 26 26 N 1.20900 * 115.91010 * 359.68949 * 25 24 23 27 27 C 1.46926 * 118.73874 * 306.38863 * 19 18 17 28 28 C 1.47026 * 125.64651 * 180.02562 * 9 7 2 29 29 H 0.97003 * 119.99428 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36583 * 322.92756 * 10 9 7 31 31 H 1.09001 * 110.36820 * 85.14293 * 10 9 7 32 32 H 1.09003 * 111.15893 * 205.13233 * 11 10 9 33 33 H 1.08996 * 110.93852 * 81.21538 * 11 10 9 34 34 H 1.09005 * 109.45526 * 301.36473 * 16 14 12 35 35 H 1.08991 * 109.46282 * 61.33982 * 16 14 12 36 36 H 1.08996 * 109.49926 * 58.58466 * 17 16 14 37 37 H 1.09000 * 109.49729 * 178.64758 * 17 16 14 38 38 H 1.08995 * 109.59077 * 174.42514 * 18 17 16 39 39 H 1.08998 * 109.58741 * 294.71269 * 18 17 16 40 40 H 1.07993 * 128.64556 * 0.02562 * 23 22 20 41 41 H 1.08999 * 109.59274 * 293.82449 * 27 19 18 42 42 H 1.08998 * 109.58851 * 173.39812 * 27 19 18 43 43 H 1.08996 * 109.88303 * 59.55845 * 28 9 7 44 44 H 1.09001 * 109.88235 * 298.39667 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6525 0.7003 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0010 11 6 -0.4051 -3.9352 0.6080 12 6 0.7782 -4.7524 0.0255 13 1 0.5480 -5.1001 -0.9816 14 6 1.1226 -5.9316 0.9376 15 1 1.3614 -5.5625 1.9350 16 6 -0.0742 -6.8821 1.0175 17 6 0.2573 -8.0445 1.9562 18 6 1.4545 -8.8206 1.3984 19 7 2.5657 -7.8841 1.1819 20 6 3.7787 -8.1218 1.7192 21 8 4.7130 -7.3904 1.4575 22 6 3.9731 -9.2760 2.6295 23 6 5.1695 -9.6446 3.4091 24 7 4.7881 -10.7322 4.0243 25 8 3.6482 -10.9924 3.7191 26 7 3.1194 -10.2253 2.9487 27 6 2.3297 -6.6837 0.3682 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 -0.5996 -1.7589 0.6147 31 1 -0.5274 -2.4845 -1.0193 32 1 -1.3608 -4.3372 0.2713 33 1 -0.3587 -3.9021 1.6965 34 1 -0.9412 -6.3429 1.3994 35 1 -0.2968 -7.2703 0.0237 36 1 0.5041 -7.6554 2.9440 37 1 -0.6040 -8.7083 2.0315 38 1 1.7569 -9.5878 2.1111 39 1 1.1786 -9.2882 0.4533 40 1 6.1232 -9.1404 3.4597 41 1 2.1259 -6.9750 -0.6622 42 1 3.2094 -6.0410 0.4012 43 1 2.5576 -3.8512 0.8832 44 1 2.5286 -3.8643 -0.9022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961261909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:09 Heat of formation + Delta-G solvation = 117.256345 kcal Electronic energy + Delta-G solvation = -27384.008766 eV Core-core repulsion = 23535.895930 eV Total energy + Delta-G solvation = -3848.112836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.30705 -40.55896 -38.45443 -36.82408 -35.28052 -34.90304 -33.60590 -32.36199 -31.16628 -29.14070 -27.34700 -26.92120 -25.15425 -24.64542 -24.07854 -22.80675 -21.41410 -20.00657 -19.90051 -19.46167 -19.39316 -18.52205 -17.67832 -16.87671 -16.27612 -15.64866 -15.28449 -15.02940 -14.65277 -14.61039 -14.18060 -13.88926 -13.62668 -13.35418 -13.21731 -13.09516 -12.72316 -12.41249 -12.12312 -11.77194 -11.63227 -11.59348 -11.24963 -11.16106 -11.08909 -10.97217 -10.82850 -10.75044 -10.71178 -10.53755 -10.09558 -10.03471 -9.78675 -9.74502 -9.45841 -8.89976 -8.61710 -6.79078 -5.62272 -3.03330 0.33877 0.94482 2.19963 2.61288 2.99717 3.07519 3.42038 3.47000 3.49002 3.49317 4.12541 4.36494 4.50681 4.64035 4.75952 4.79560 4.89438 4.96199 5.10245 5.32609 5.42028 5.48140 5.55309 5.59271 5.63530 5.69132 5.73783 5.83931 5.92650 5.99378 6.03411 6.20027 6.22609 6.38885 6.42451 6.62403 6.64129 6.78806 6.94754 7.00379 7.55186 7.59742 7.67025 7.88988 8.02580 8.40073 9.26055 9.87096 10.52342 11.41706 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002860 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.407075 B = 9788.032693 C =10710.835863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.136 4.136 12 C -0.092 4.092 13 H 0.071 0.929 14 C -0.087 4.087 15 H 0.076 0.924 16 C -0.116 4.116 17 C -0.132 4.132 18 C 0.077 3.923 19 N -0.588 5.588 20 C 0.599 3.401 21 O -0.511 6.511 22 C -0.029 4.029 23 C 0.037 3.963 24 N -0.351 5.351 25 O 0.333 5.667 26 N -0.321 5.321 27 C 0.116 3.884 28 C 0.140 3.860 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.010 0.990 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.228 0.772 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.023 0.977 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -23.022 5.187 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.112 4.112 13 H 0.090 0.910 14 C -0.107 4.107 15 H 0.094 0.906 16 C -0.153 4.153 17 C -0.170 4.170 18 C -0.046 4.046 19 N -0.321 5.321 20 C 0.382 3.618 21 O -0.384 6.384 22 C -0.194 4.194 23 C -0.148 4.148 24 N -0.074 5.074 25 O 0.111 5.889 26 N -0.046 5.046 27 C -0.005 4.005 28 C 0.014 3.986 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.245 0.755 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.041 0.959 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.121 -23.325 5.462 24.050 hybrid contribution 0.887 1.572 -0.440 1.858 sum 3.008 -21.753 5.022 22.527 Atomic orbital electron populations 1.69806 1.04879 1.24654 1.57921 1.24781 0.95726 0.97685 1.02622 0.86079 0.78562 0.83383 0.77556 1.21666 1.21689 1.20687 1.19101 0.90528 0.82547 1.42678 0.90534 1.44505 1.01992 0.99786 1.86779 1.21952 0.84681 0.92620 0.98085 1.23057 0.95770 0.98712 0.99898 1.22147 0.97582 0.93462 0.97988 0.91026 1.21533 0.93828 0.94943 1.00350 0.90591 1.21614 0.98428 0.95685 0.99617 1.21896 0.97368 0.97966 0.99761 1.22545 0.86794 0.92435 1.02784 1.48000 1.09419 1.24560 1.50071 1.16616 0.83659 0.82035 0.79456 1.90873 1.40217 1.47056 1.60279 1.26361 0.91219 0.98647 1.03171 1.27758 1.01548 0.92421 0.93122 1.75082 0.96662 1.16204 1.19439 1.85099 1.19095 1.41094 1.43627 1.75174 1.21316 1.02286 1.05783 1.21955 1.00288 0.84796 0.93474 1.21348 0.93680 0.85931 0.97683 0.93820 0.87762 0.97216 0.92490 0.92302 0.90851 0.91715 0.91610 0.90470 0.86595 0.90799 0.75539 0.90712 0.88138 0.95927 0.96282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.70 3.40 -169.94 -0.58 -16.27 16 10 C 0.15 3.68 5.89 -2.41 -0.01 3.66 16 11 C -0.14 -2.47 5.51 -24.47 -0.13 -2.61 16 12 C -0.09 -1.52 2.49 -88.79 -0.22 -1.74 16 13 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.09 -1.15 1.72 -90.49 -0.16 -1.30 16 15 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 16 C -0.12 -1.22 5.00 -26.69 -0.13 -1.35 16 17 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 18 C 0.08 0.70 6.34 -3.71 -0.02 0.68 16 19 N -0.59 -6.77 2.97 -173.72 -0.52 -7.29 16 20 C 0.60 7.45 7.72 -12.13 -0.09 7.36 16 21 O -0.51 -7.84 16.48 5.36 0.09 -7.75 16 22 C -0.03 -0.29 7.26 -80.07 -0.58 -0.87 16 23 C 0.04 0.30 12.63 -14.29 -0.18 0.12 16 24 N -0.35 -3.03 12.22 30.71 0.38 -2.66 16 25 O 0.33 2.84 11.65 27.27 0.32 3.16 16 26 N -0.32 -2.91 8.87 33.49 0.30 -2.62 16 27 C 0.12 1.47 5.43 -3.71 -0.02 1.45 16 28 C 0.14 2.91 6.02 -3.06 -0.02 2.89 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.10 2.86 5.87 -51.93 -0.31 2.56 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.12 1.02 3.86 -66.60 -0.26 0.76 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.23 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.48 6.41 -51.93 -0.33 1.15 16 43 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -31.81 349.07 -7.49 -39.30 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.28 Total: -1.93 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.99 Total: 0.07 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.14 Total: -55.48 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: 0.41 Total: -4.59 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.81 -7.49 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.556 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds