Wall clock time and date at job start Tue Mar 31 2020 12:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00606 * 2 1 4 4 H 1.48491 * 109.47364 * 270.00799 * 3 2 1 5 5 H 1.48507 * 109.46461 * 30.00818 * 3 2 1 6 6 H 1.48496 * 109.47248 * 149.99911 * 3 2 1 7 7 C 1.38819 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99537 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64923 * 0.04766 * 9 7 2 11 11 C 1.55122 * 104.94077 * 203.96830 * 10 9 7 12 12 C 1.55157 * 101.48580 * 323.21873 * 11 10 9 13 13 H 1.09002 * 110.72335 * 276.83209 * 12 11 10 14 14 C 1.53003 * 110.71870 * 153.73690 * 12 11 10 15 15 H 1.09001 * 109.50000 * 302.43881 * 14 12 11 16 16 C 1.53043 * 109.49782 * 62.51057 * 14 12 11 17 17 C 1.53038 * 109.53521 * 181.34944 * 16 14 12 18 18 C 1.53193 * 109.31386 * 298.62962 * 17 16 14 19 19 N 1.46925 * 108.77292 * 54.63905 * 18 17 16 20 20 C 1.34774 * 120.63148 * 126.41366 * 19 18 17 21 21 O 1.21502 * 120.00159 * 174.88928 * 20 19 18 22 22 C 1.48280 * 120.00070 * 354.89643 * 20 19 18 23 23 C 1.47487 * 128.71080 * 185.87729 * 22 20 19 24 24 N 1.30648 * 102.71288 * 179.97438 * 23 22 20 25 25 O 1.20834 * 109.62017 * 0.02562 * 24 23 22 26 26 N 1.20900 * 115.91010 * 359.68949 * 25 24 23 27 27 C 1.46926 * 118.73874 * 306.38863 * 19 18 17 28 28 C 1.47026 * 125.64651 * 180.02562 * 9 7 2 29 29 H 0.97003 * 119.99428 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36583 * 322.92756 * 10 9 7 31 31 H 1.09001 * 110.36820 * 85.14293 * 10 9 7 32 32 H 1.09003 * 111.15893 * 205.13233 * 11 10 9 33 33 H 1.08996 * 110.93852 * 81.21538 * 11 10 9 34 34 H 1.09005 * 109.45526 * 301.36473 * 16 14 12 35 35 H 1.08991 * 109.46282 * 61.33982 * 16 14 12 36 36 H 1.08996 * 109.49926 * 58.58466 * 17 16 14 37 37 H 1.09000 * 109.49729 * 178.64758 * 17 16 14 38 38 H 1.08995 * 109.59077 * 174.42514 * 18 17 16 39 39 H 1.08998 * 109.58741 * 294.71269 * 18 17 16 40 40 H 1.07993 * 128.64556 * 0.02562 * 23 22 20 41 41 H 1.08999 * 109.59274 * 293.82449 * 27 19 18 42 42 H 1.08998 * 109.58851 * 173.39812 * 27 19 18 43 43 H 1.08996 * 109.88303 * 59.55845 * 28 9 7 44 44 H 1.09001 * 109.88235 * 298.39667 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6525 0.7003 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0010 11 6 -0.4051 -3.9352 0.6080 12 6 0.7782 -4.7524 0.0255 13 1 0.5480 -5.1001 -0.9816 14 6 1.1226 -5.9316 0.9376 15 1 1.3614 -5.5625 1.9350 16 6 -0.0742 -6.8821 1.0175 17 6 0.2573 -8.0445 1.9562 18 6 1.4545 -8.8206 1.3984 19 7 2.5657 -7.8841 1.1819 20 6 3.7787 -8.1218 1.7192 21 8 4.7130 -7.3904 1.4575 22 6 3.9731 -9.2760 2.6295 23 6 5.1695 -9.6446 3.4091 24 7 4.7881 -10.7322 4.0243 25 8 3.6482 -10.9924 3.7191 26 7 3.1194 -10.2253 2.9487 27 6 2.3297 -6.6837 0.3682 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 -0.5996 -1.7589 0.6147 31 1 -0.5274 -2.4845 -1.0193 32 1 -1.3608 -4.3372 0.2713 33 1 -0.3587 -3.9021 1.6965 34 1 -0.9412 -6.3429 1.3994 35 1 -0.2968 -7.2703 0.0237 36 1 0.5041 -7.6554 2.9440 37 1 -0.6040 -8.7083 2.0315 38 1 1.7569 -9.5878 2.1111 39 1 1.1786 -9.2882 0.4533 40 1 6.1232 -9.1404 3.4597 41 1 2.1259 -6.9750 -0.6622 42 1 3.2094 -6.0410 0.4012 43 1 2.5576 -3.8512 0.8832 44 1 2.5286 -3.8643 -0.9022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961261909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:08 Heat of formation + Delta-G solvation = 97.948098 kcal Electronic energy + Delta-G solvation = -27384.846034 eV Core-core repulsion = 23535.895930 eV Total energy + Delta-G solvation = -3848.950105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.00721 -41.52300 -39.75820 -38.13500 -36.11525 -35.62782 -35.05226 -33.63394 -32.52057 -30.89444 -28.78694 -27.94789 -26.43119 -25.98696 -24.84526 -23.97340 -22.43518 -21.77268 -20.94671 -20.67726 -20.12389 -19.25394 -18.91821 -18.49631 -17.30448 -16.93817 -16.59415 -16.23183 -15.90172 -15.62067 -15.53900 -15.22884 -14.69769 -14.40541 -14.21499 -14.16305 -13.85689 -13.77704 -13.49135 -13.37743 -13.04324 -12.76387 -12.72616 -12.46587 -12.31397 -12.18301 -12.02937 -11.88525 -11.83876 -11.81359 -11.72706 -11.59598 -11.28775 -11.21918 -11.03967 -10.74599 -9.84097 -8.88336 -7.78547 -5.22567 -0.43167 0.28193 1.34141 1.44378 1.46338 1.55243 1.71482 2.23755 2.41381 2.48419 2.77754 3.30124 3.34297 3.62621 3.65809 3.68300 3.79063 3.93304 4.03700 4.19446 4.23585 4.28240 4.41297 4.44370 4.55126 4.62339 4.69947 4.74612 4.83839 4.86370 4.93366 4.97783 5.09654 5.11724 5.18774 5.31810 5.36937 5.42948 5.44167 5.53570 5.68944 5.83317 6.05288 6.31891 6.67342 7.11202 7.33125 7.79084 8.42619 9.23082 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002860 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.407075 B = 9788.032693 C =10710.835863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.117 4.117 12 C -0.075 4.075 13 H 0.088 0.912 14 C -0.075 4.075 15 H 0.056 0.944 16 C -0.112 4.112 17 C -0.126 4.126 18 C 0.075 3.925 19 N -0.587 5.587 20 C 0.596 3.404 21 O -0.549 6.549 22 C -0.045 4.045 23 C 0.048 3.952 24 N -0.357 5.357 25 O 0.343 5.657 26 N -0.314 5.314 27 C 0.119 3.881 28 C 0.135 3.865 29 H 0.247 0.753 30 H 0.069 0.931 31 H -0.013 1.013 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.251 0.749 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.015 0.985 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -25.321 5.462 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.156 4.156 12 C -0.094 4.094 13 H 0.106 0.894 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.149 4.149 17 C -0.164 4.164 18 C -0.046 4.046 19 N -0.319 5.319 20 C 0.381 3.619 21 O -0.426 6.426 22 C -0.209 4.209 23 C -0.137 4.137 24 N -0.080 5.080 25 O 0.118 5.882 26 N -0.036 5.036 27 C -0.003 4.003 28 C 0.010 3.990 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.033 0.967 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.750 -25.662 5.732 26.353 hybrid contribution 1.012 2.254 -0.518 2.524 sum 2.761 -23.408 5.214 24.140 Atomic orbital electron populations 1.70063 1.06116 1.24994 1.58613 1.25625 0.96694 1.00906 1.02723 0.85063 0.77593 0.79088 0.77515 1.21254 1.21665 1.19667 1.19446 0.90889 0.84106 1.42615 0.90699 1.44848 1.03001 1.00922 1.86703 1.21784 0.83796 0.95378 0.96473 1.22876 0.98056 0.95142 0.99495 1.22045 0.94590 0.93185 0.99616 0.89355 1.21366 0.95555 0.94327 0.98243 0.92575 1.21598 0.96681 0.95508 1.01126 1.21872 0.98197 0.97691 0.98606 1.22752 0.85915 0.92008 1.03972 1.48082 1.09936 1.24380 1.49460 1.16871 0.83435 0.82223 0.79382 1.90850 1.41436 1.48605 1.61718 1.26064 0.92403 0.98574 1.03903 1.28153 1.01821 0.91877 0.91849 1.75112 0.96625 1.16489 1.19781 1.85098 1.19146 1.40734 1.43228 1.75142 1.21102 1.01896 1.05430 1.21793 0.98820 0.85087 0.94565 1.21524 0.95294 0.85152 0.97028 0.94304 0.91337 0.99526 0.89219 0.92406 0.90738 0.89977 0.92710 0.87713 0.86165 0.88890 0.73289 0.89023 0.90866 0.96712 0.96466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.57 10.09 21.65 0.22 -57.35 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -14.11 10.27 84.04 0.86 -13.25 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -33.56 3.40 -691.56 -2.35 -35.91 16 10 C 0.15 7.50 5.89 86.93 0.51 8.01 16 11 C -0.12 -4.15 5.51 32.06 0.18 -3.98 16 12 C -0.07 -2.37 2.49 -9.61 -0.02 -2.39 16 13 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 14 C -0.08 -1.86 1.72 -10.71 -0.02 -1.88 16 15 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 16 C -0.11 -1.97 5.00 30.62 0.15 -1.82 16 17 C -0.13 -1.81 6.08 30.67 0.19 -1.63 16 18 C 0.08 1.14 6.34 86.36 0.55 1.68 16 19 N -0.59 -12.62 2.97 -821.83 -2.44 -15.06 16 20 C 0.60 14.42 7.72 86.92 0.67 15.10 16 21 O -0.55 -17.06 16.48 -3.72 -0.06 -17.13 16 22 C -0.05 -0.84 7.26 44.29 0.32 -0.52 16 23 C 0.05 0.70 12.63 87.31 1.10 1.81 16 24 N -0.36 -5.48 12.22 -61.43 -0.75 -6.23 16 25 O 0.34 5.14 11.65 140.86 1.64 6.78 16 26 N -0.31 -5.04 8.87 -52.08 -0.46 -5.50 16 27 C 0.12 2.87 5.43 86.36 0.47 3.34 16 28 C 0.14 5.73 6.02 86.73 0.52 6.25 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.07 3.91 5.87 -2.39 -0.01 3.90 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.09 2.62 8.08 -2.39 -0.02 2.60 16 33 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 34 H 0.07 1.35 7.28 -2.38 -0.02 1.33 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 1.77 3.86 -29.69 -0.11 1.65 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.25 2.20 8.06 -2.91 -0.02 2.17 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.20 6.41 -2.39 -0.02 2.18 16 43 H 0.01 0.65 7.68 -2.39 -0.02 0.63 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -71.71 349.07 4.68 -67.03 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.91 Total: 7.20 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.95 Total: 7.27 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.78 Total: -120.06 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 1.58 Total: -10.35 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -71.71 4.68 -67.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.978 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds