Wall clock time and date at job start Tue Mar 31 2020 12:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47012 * 274.97656 * 3 2 1 5 5 H 1.48497 * 109.47255 * 34.97637 * 3 2 1 6 6 H 1.48503 * 109.47291 * 154.97686 * 3 2 1 7 7 C 1.38813 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99628 * 172.62863 * 7 2 1 9 9 N 1.36936 * 120.00040 * 352.89846 * 7 2 1 10 10 C 1.47018 * 125.64720 * 4.98916 * 9 7 2 11 11 C 1.54325 * 107.27005 * 181.02523 * 10 9 7 12 12 C 1.55148 * 102.94325 * 22.18925 * 11 10 9 13 13 H 1.08998 * 111.00674 * 82.57821 * 12 11 10 14 14 C 1.53005 * 111.00665 * 206.42725 * 12 11 10 15 15 H 1.08995 * 109.49581 * 59.93763 * 14 12 11 16 16 C 1.53041 * 109.49407 * 299.84017 * 14 12 11 17 17 C 1.53040 * 109.53692 * 178.68303 * 16 14 12 18 18 C 1.53200 * 109.31292 * 61.36574 * 17 16 14 19 19 N 1.46930 * 108.77209 * 305.36573 * 18 17 16 20 20 C 1.34779 * 120.62930 * 233.58660 * 19 18 17 21 21 O 1.21501 * 120.00139 * 173.56663 * 20 19 18 22 22 C 1.48280 * 119.99802 * 353.56616 * 20 19 18 23 23 C 1.47494 * 128.70944 * 173.50022 * 22 20 19 24 24 N 1.30647 * 102.71574 * 179.97438 * 23 22 20 25 25 O 1.20832 * 109.61951 * 0.02562 * 24 23 22 26 26 N 1.20901 * 115.90915 * 359.68656 * 25 24 23 27 27 C 1.46921 * 118.74168 * 53.61180 * 19 18 17 28 28 C 1.47419 * 125.64660 * 184.68084 * 9 7 2 29 29 H 0.96999 * 120.00140 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.88357 * 300.43522 * 10 9 7 31 31 H 1.08996 * 109.88795 * 61.45267 * 10 9 7 32 32 H 1.08999 * 110.72449 * 140.55703 * 11 10 9 33 33 H 1.09007 * 110.71887 * 263.65061 * 11 10 9 34 34 H 1.09002 * 109.46044 * 298.69531 * 16 14 12 35 35 H 1.08994 * 109.46484 * 58.66267 * 16 14 12 36 36 H 1.09000 * 109.49941 * 301.41580 * 17 16 14 37 37 H 1.08991 * 109.52717 * 181.33086 * 17 16 14 38 38 H 1.09005 * 109.58281 * 185.58046 * 18 17 16 39 39 H 1.08997 * 109.70424 * 65.21963 * 18 17 16 40 40 H 1.07999 * 128.64145 * 0.02811 * 23 22 20 41 41 H 1.08997 * 109.58629 * 186.60614 * 27 19 18 42 42 H 1.08995 * 109.59095 * 66.17034 * 27 19 18 43 43 H 1.09006 * 110.37024 * 274.74724 * 28 9 7 44 44 H 1.09008 * 110.37076 * 37.07107 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2060 -0.1195 9 7 1.3335 -2.3835 0.1477 10 6 -0.1279 -2.5317 0.2099 11 6 -0.4282 -4.0327 0.4056 12 6 0.8938 -4.5758 1.0092 13 1 0.9329 -4.4017 2.0845 14 6 1.0731 -6.0613 0.6896 15 1 1.0986 -6.2004 -0.3911 16 6 -0.0943 -6.8553 1.2802 17 6 0.0669 -8.3371 0.9330 18 6 1.3686 -8.8625 1.5467 19 7 2.4799 -8.0130 1.0972 20 6 3.5650 -8.5555 0.5100 21 8 4.4234 -7.8368 0.0378 22 6 3.7112 -10.0294 0.4402 23 6 4.7378 -10.8223 -0.2618 24 7 4.3884 -12.0513 0.0111 25 8 3.3988 -12.0473 0.7044 26 7 2.9608 -10.9581 0.9937 27 6 2.3862 -6.5609 1.3005 28 6 1.9494 -3.7178 0.2635 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5228 -1.9620 1.0511 31 1 -0.5762 -2.1796 -0.7191 32 1 -1.2559 -4.1730 1.1009 33 1 -0.6440 -4.5106 -0.5500 34 1 -0.1040 -6.7353 2.3635 35 1 -1.0319 -6.4852 0.8656 36 1 0.1017 -8.4553 -0.1500 37 1 -0.7768 -8.8990 1.3335 38 1 1.5381 -9.8888 1.2206 39 1 1.3012 -8.8310 2.6341 40 1 5.5714 -10.4737 -0.8534 41 1 3.2270 -6.0686 0.8121 42 1 2.4001 -6.3397 2.3677 43 1 2.1477 -4.1313 -0.7255 44 1 2.8705 -3.6615 0.8437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961261911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:12 Heat of formation + Delta-G solvation = 114.407631 kcal Electronic energy + Delta-G solvation = -27295.279489 eV Core-core repulsion = 23447.043124 eV Total energy + Delta-G solvation = -3848.236366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.32090 -40.56202 -38.44399 -36.83296 -35.27814 -34.91436 -33.60395 -32.35506 -31.19583 -29.13199 -27.38157 -26.91073 -25.16355 -24.61355 -24.10105 -22.81232 -21.43331 -19.92879 -19.87846 -19.56319 -19.43660 -18.49365 -17.67593 -16.84867 -16.28511 -15.74453 -15.25518 -14.95077 -14.61672 -14.55354 -14.20239 -13.92837 -13.70854 -13.34450 -13.23384 -13.10159 -12.61595 -12.37308 -12.10929 -11.87806 -11.83407 -11.69148 -11.25871 -11.18976 -11.03450 -10.94594 -10.85050 -10.75327 -10.67867 -10.50255 -10.08291 -9.99055 -9.83134 -9.75567 -9.56892 -8.91466 -8.53439 -6.78228 -5.68992 -3.00514 0.32915 0.93023 2.20118 2.58018 3.00083 3.07641 3.42054 3.47660 3.47833 3.49808 4.14042 4.35844 4.51409 4.61864 4.74420 4.76651 4.88394 4.94688 5.09629 5.30021 5.38049 5.48172 5.52002 5.60685 5.63892 5.67743 5.72467 5.82580 5.91133 5.96399 6.03090 6.18996 6.21157 6.34311 6.44446 6.57583 6.60989 6.76023 6.93507 7.00214 7.58507 7.60134 7.67473 7.86435 8.00726 8.30259 9.26091 9.86983 10.53795 11.43255 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.002714 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.825774 B =10314.269864 C =11211.805254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.095 4.095 13 H 0.076 0.924 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.116 4.116 17 C -0.133 4.133 18 C 0.087 3.913 19 N -0.589 5.589 20 C 0.599 3.401 21 O -0.510 6.510 22 C -0.031 4.031 23 C 0.037 3.963 24 N -0.352 5.352 25 O 0.334 5.666 26 N -0.321 5.321 27 C 0.116 3.884 28 C 0.140 3.860 29 H 0.251 0.749 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.228 0.772 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.017 0.983 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -24.110 3.376 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.115 4.115 13 H 0.094 0.906 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.154 4.154 17 C -0.171 4.171 18 C -0.036 4.036 19 N -0.322 5.322 20 C 0.383 3.617 21 O -0.384 6.384 22 C -0.197 4.197 23 C -0.149 4.149 24 N -0.075 5.075 25 O 0.111 5.889 26 N -0.044 5.044 27 C -0.005 4.005 28 C 0.014 3.986 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.244 0.756 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.000 -24.451 3.526 24.785 hybrid contribution 0.775 1.692 -0.363 1.896 sum 2.774 -22.759 3.163 23.145 Atomic orbital electron populations 1.69987 1.04910 1.24924 1.57093 1.24809 0.95685 0.97636 1.02371 0.86140 0.78743 0.83712 0.77459 1.21735 1.21673 1.20624 1.19070 0.91157 0.82657 1.42628 0.90488 1.44489 1.01772 1.00930 1.86087 1.21142 0.84470 0.88649 1.00629 1.22870 0.95767 0.99518 0.99183 1.22356 0.97719 0.91282 1.00124 0.90608 1.21487 0.93319 0.95199 1.00641 0.90631 1.21615 0.99065 0.93532 1.01150 1.21922 0.96565 0.97268 1.01355 1.22365 0.85843 0.95454 0.99922 1.48006 1.17335 1.08989 1.57828 1.16598 0.82869 0.82973 0.79276 1.90874 1.41534 1.59830 1.46143 1.26343 0.95076 0.97486 1.00752 1.27767 1.01078 0.85703 1.00309 1.75082 1.01190 1.22441 1.08790 1.85097 1.30330 1.26251 1.47205 1.75331 1.19629 0.92382 1.17085 1.21947 1.00113 0.77020 1.01416 1.21638 0.94352 0.86530 0.96094 0.93852 0.93633 0.94327 0.92394 0.92668 0.91640 0.90847 0.91600 0.90435 0.87563 0.90707 0.75555 0.88104 0.90628 0.96492 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.36 55.49 0.57 -26.82 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.38 29.56 -169.99 -5.02 17.36 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.43 10.26 -15.06 -0.15 -6.59 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.61 -15.66 3.39 -169.94 -0.58 -16.24 16 10 C 0.18 4.27 5.38 -3.07 -0.02 4.25 16 11 C -0.14 -2.42 5.28 -24.90 -0.13 -2.55 16 12 C -0.09 -1.55 2.58 -88.35 -0.23 -1.77 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C -0.09 -1.11 1.86 -90.49 -0.17 -1.28 16 15 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 16 C -0.12 -1.20 4.97 -26.69 -0.13 -1.33 16 17 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 18 C 0.09 0.77 6.17 -3.70 -0.02 0.75 16 19 N -0.59 -6.60 2.97 -173.71 -0.52 -7.12 16 20 C 0.60 7.26 7.71 -12.13 -0.09 7.17 16 21 O -0.51 -7.67 16.47 5.37 0.09 -7.58 16 22 C -0.03 -0.31 7.18 -80.07 -0.58 -0.88 16 23 C 0.04 0.29 12.63 -14.29 -0.18 0.11 16 24 N -0.35 -2.96 12.22 30.71 0.38 -2.59 16 25 O 0.33 2.78 11.65 27.27 0.32 3.10 16 26 N -0.32 -2.84 9.03 33.49 0.30 -2.54 16 27 C 0.12 1.43 5.51 -3.71 -0.02 1.41 16 28 C 0.14 2.88 6.06 -2.41 -0.01 2.87 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.05 1.22 7.31 -51.93 -0.38 0.84 16 31 H 0.04 1.05 7.59 -51.93 -0.39 0.65 16 32 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.05 0.94 8.04 -51.92 -0.42 0.52 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 7.22 -51.93 -0.37 0.41 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.91 4.26 -52.63 -0.22 0.68 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.23 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.10 1.44 6.60 -51.93 -0.34 1.10 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.02 0.36 7.99 -51.93 -0.41 -0.05 16 44 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -32.09 350.51 -7.49 -39.58 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.32 Total: -2.93 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.00 Total: 0.50 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.16 Total: -55.31 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.41 Total: -4.48 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.09 -7.49 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.989 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds